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PMC:3218875 / 13880-14005 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T21317 107-117 Gene_expression denotes expression
T21286 102-105 Protein denotes NIK
T21285 79-100 Protein denotes NF-κB inducing kinase
T21284 9-13 Protein denotes RANK
T21283 0-4 Protein denotes CD40
R13906 T21285 T21317 themeOf NF-κB inducing kinase,expression
R13907 T21286 T21285 equivalentTo NIK,NF-κB inducing kinase

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21879 124-125 . denotes .
T21878 118-124 NNS denotes levels
T21877 107-117 NN denotes expression
T21876 105-106 -RRB- denotes )
T21875 102-105 NNP denotes NIK
T21874 101-102 -LRB- denotes (
T21873 94-100 NN denotes kinase
T21872 85-93 VBG denotes inducing
T21871 79-84 JJ denotes NF-κB
T21870 76-78 IN denotes on
T21869 66-75 JJ denotes dependent
T21868 63-65 VBZ denotes is
T21867 58-62 WDT denotes that
T21866 50-57 NN denotes pathway
T21865 44-49 NN denotes NF-κB
T21864 31-43 JJ denotes noncanonical
T21863 27-30 DT denotes the
T21862 18-26 VB denotes activate
T21861 14-17 MD denotes can
T21860 9-13 NNP denotes RANK
T21859 5-8 CC denotes and
T21858 0-4 CD denotes CD40
R14230 T21858 T21858 ROOT CD40,CD40
R14231 T21859 T21858 cc and,CD40
R14232 T21860 T21862 nsubj RANK,activate
R14233 T21861 T21862 aux can,activate
R14234 T21862 T21858 conj activate,CD40
R14235 T21863 T21866 det the,pathway
R14236 T21864 T21866 amod noncanonical,pathway
R14237 T21865 T21866 compound NF-κB,pathway
R14238 T21866 T21862 dobj pathway,activate
R14239 T21867 T21868 nsubj that,is
R14240 T21868 T21866 relcl is,pathway
R14241 T21869 T21868 acomp dependent,is
R14242 T21870 T21869 prep on,dependent
R14243 T21871 T21872 nsubj NF-κB,inducing
R14244 T21872 T21870 pcomp inducing,on
R14245 T21873 T21878 nmod kinase,levels
R14246 T21874 T21878 punct (,levels
R14247 T21875 T21878 compound NIK,levels
R14248 T21876 T21877 punct ),expression
R14249 T21877 T21878 compound expression,levels
R14250 T21878 T21872 dobj levels,inducing
R14251 T21879 T21862 punct .,activate

DLUT931

Id Subject Object Predicate Lexical cue
T22191 66-75 Regulation denotes dependent
T22190 107-117 Gene_expression denotes expression
T22159 102-105 Protein denotes NIK
T22158 79-100 Protein denotes NF-κB inducing kinase
T22157 9-13 Protein denotes RANK
T22156 0-4 Protein denotes CD40
R14470 T22158 T22190 themeOf NF-κB inducing kinase,expression
R14471 T22159 T22190 themeOf NIK,expression
R14502 T22190 T22191 themeOf expression,dependent
R14503 T22190 T22191 themeOf expression,dependent

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22075 102-105 http://www.uniprot.org/uniprot/Q99558 denotes NIK
T22074 0-4 http://www.uniprot.org/uniprot/P25942 denotes CD40

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21501 102-105 Protein denotes NIK
T21500 79-100 Protein denotes NF-κB inducing kinase
T21499 9-13 Protein denotes RANK
T21498 0-4 Protein denotes CD40

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21555 118-124 NN denotes levels
T21554 107-117 NN denotes expression
T21553 105-106 -RRB- denotes )
T21552 102-105 NN denotes NIK
T21551 101-102 -LRB- denotes (
T21550 94-100 NN denotes kinase
T21549 85-93 VB denotes inducing
T21548 79-84 NN denotes NF-κB
T21547 76-78 IN denotes on
T21546 66-75 JJ denotes dependent
T21545 63-65 VB denotes is
T21544 58-62 WDT denotes that
T21543 50-57 NN denotes pathway
T21542 44-49 NN denotes NF-κB
T21541 31-43 JJ denotes noncanonical
T21540 27-30 DT denotes the
T21539 18-26 VB denotes activate
T21538 14-17 MD denotes can
T21537 9-13 NN denotes RANK
T21536 5-8 CC denotes and
T21535 0-4 NN denotes CD40
R14011 T21535 T21536 arg1Of CD40,and
R14012 T21536 T21538 arg1Of and,can
R14013 T21536 T21539 arg1Of and,activate
R14014 T21537 T21536 arg2Of RANK,and
R14015 T21539 T21538 arg2Of activate,can
R14016 T21543 T21539 arg2Of pathway,activate
R14017 T21543 T21540 arg1Of pathway,the
R14018 T21543 T21541 arg1Of pathway,noncanonical
R14019 T21543 T21542 arg1Of pathway,NF-κB
R14020 T21543 T21544 arg1Of pathway,that
R14021 T21543 T21545 arg1Of pathway,is
R14022 T21543 T21546 arg1Of pathway,dependent
R14023 T21546 T21545 arg2Of dependent,is
R14024 T21546 T21547 arg1Of dependent,on
R14025 T21548 T21547 arg2Of NF-κB,on
R14026 T21548 T21549 arg1Of NF-κB,inducing
R14027 T21552 T21551 arg2Of NIK,(
R14028 T21553 T21551 arg3Of ),(
R14029 T21555 T21549 arg2Of levels,inducing
R14030 T21555 T21550 arg1Of levels,kinase
R14031 T21555 T21551 arg1Of levels,(
R14032 T21555 T21554 arg1Of levels,expression

GO-BP

Id Subject Object Predicate Lexical cue
T21743 102-105 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK

GO-MF

Id Subject Object Predicate Lexical cue
T21764 102-105 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK

sentences

Id Subject Object Predicate Lexical cue
T21402 0-125 Sentence denotes CD40 and RANK can activate the noncanonical NF-κB pathway that is dependent on NF-κB inducing kinase (NIK) expression levels.
T75 0-125 Sentence denotes CD40 and RANK can activate the noncanonical NF-κB pathway that is dependent on NF-κB inducing kinase (NIK) expression levels.

simple1

Id Subject Object Predicate Lexical cue
T21823 102-105 Protein denotes NIK
T21822 79-100 Protein denotes NF-κB inducing kinase
T21821 9-13 Protein denotes RANK
T21820 0-4 Protein denotes CD40

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22370 102-105 Protein denotes NIK
T22369 79-100 Protein denotes NF-κB inducing kinase
T22368 9-13 Protein denotes RANK
T22367 0-4 Protein denotes CD40
T22402 66-75 Regulation denotes dependent
T22401 107-117 Gene_expression denotes expression
R14569 T22369 T22402 themeOf NF-κB inducing kinase,dependent
R14570 T22369 T22401 themeOf NF-κB inducing kinase,expression
R14571 T22370 T22401 themeOf NIK,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T22109 79-100 Protein denotes NF-κB inducing kinase
T22108 9-13 Protein denotes RANK
T22107 0-4 Protein denotes CD40
T22142 107-117 Gene_expression denotes expression
T22141 66-75 Regulation denotes dependent
T22110 102-105 Protein denotes NIK
R14446 T22109 T22141 themeOf NF-κB inducing kinase,dependent
R14447 T22109 T22142 themeOf NF-κB inducing kinase,expression
R14448 T22110 T22142 themeOf NIK,expression
R14467 T22142 T22141 themeOf expression,dependent
R14468 T22142 T22141 themeOf expression,dependent

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T22485 76-117 Gene_expression denotes on NF-κB inducing kinase (NIK) expression
T22471 27-117 Protein denotes the noncanonical NF-κB pathway that is dependent on NF-κB inducing kinase (NIK) expression
T22467 79-106 Protein denotes NF-κB inducing kinase (NIK)
T22454 102-105 Protein denotes NIK
T22435 9-13 Protein denotes RANK
T22430 0-4 Protein denotes CD40
R14607 T22467 T22485 themeOf NF-κB inducing kinase (NIK),on NF-κB inducing kinase (NIK) expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T22260 66-75 Positive_regulation denotes dependent
T22259 66-75 Positive_regulation denotes dependent
T22258 107-117 Gene_expression denotes expression
T22257 107-117 Gene_expression denotes expression
T22256 102-105 Protein denotes NIK
T22255 79-100 Protein denotes NF-κB inducing kinase
T22254 44-49 Protein denotes NF-κB
T22253 9-13 Protein denotes RANK
T22252 0-4 Protein denotes CD40
R14523 T22255 T22257 themeOf NF-κB inducing kinase,expression
R14524 T22256 T22258 themeOf NIK,expression
R14525 T22257 T22259 themeOf expression,dependent
R14526 T22258 T22260 themeOf expression,dependent

test3

Id Subject Object Predicate Lexical cue
T21362 102-105 Protein denotes NIK
T21361 79-100 Protein denotes NF-κB inducing kinase
T21360 9-13 Protein denotes RANK
T21359 0-4 Protein denotes CD40
T21328 102-105 Protein denotes NIK
T21327 79-100 Protein denotes NF-κB inducing kinase
T21326 9-13 Protein denotes RANK
T21325 0-4 Protein denotes CD40
R13918 T21362 T21361 equivalentTo NIK,NF-κB inducing kinase