PMC:3218875 / 12807-13184 JSON TXT

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testone

{"project":"testone","denotations":[{"id":"T3970","span":{"begin":330,"end":345},"obj":"Phosphorylation"},{"id":"T3916","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T3915","span":{"begin":349,"end":370},"obj":"Protein"},{"id":"T3914","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T3913","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T3912","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T3911","span":{"begin":17,"end":21},"obj":"Protein"}],"relations":[{"id":"R2803","pred":"themeOf","subj":"T3911","obj":"T3970"},{"id":"R2804","pred":"causeOf","subj":"T3915","obj":"T3970"},{"id":"R2805","pred":"equivalentTo","subj":"T3916","obj":"T3915"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

bionlp-st-ge-2016-spacy-parsed

DLUT931

{"project":"DLUT931","denotations":[{"id":"T7215","span":{"begin":315,"end":324},"obj":"Positive_regulation"},{"id":"T7214","span":{"begin":25,"end":34},"obj":"Binding"},{"id":"T7160","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T7159","span":{"begin":349,"end":370},"obj":"Protein"},{"id":"T7158","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T7157","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T7156","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T7155","span":{"begin":17,"end":21},"obj":"Protein"}],"relations":[{"id":"R5068","pred":"themeOf","subj":"T7155","obj":"T7214"},{"id":"R5069","pred":"themeOf","subj":"T7156","obj":"T7214"},{"id":"R5070","pred":"themeOf","subj":"T7158","obj":"T7215"},{"id":"R5071","pred":"causeOf","subj":"T7159","obj":"T7215"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

bionlp-st-ge-2016-uniprot

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T6893","span":{"begin":300,"end":304},"obj":"http://www.uniprot.org/uniprot/Q60680-2"},{"id":"T6888","span":{"begin":300,"end":304},"obj":"http://www.uniprot.org/uniprot/O15111"},{"id":"T6875","span":{"begin":56,"end":59},"obj":"http://www.uniprot.org/uniprot/Q00653"},{"id":"T6928","span":{"begin":372,"end":375},"obj":"http://www.uniprot.org/uniprot/Q99558"},{"id":"T6927","span":{"begin":85,"end":89},"obj":"http://www.uniprot.org/uniprot/Q01201"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

bionlp-st-ge-2016-test-proteins

{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T4537","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T4536","span":{"begin":349,"end":370},"obj":"Protein"},{"id":"T4535","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T4534","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T4533","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T4532","span":{"begin":17,"end":21},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

bionlp-st-ge-2016-coref

{"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T4454","span":{"begin":300,"end":304},"obj":"Antecedent"},{"id":"T4453","span":{"begin":306,"end":311},"obj":"Anaphor"}],"relations":[{"id":"R3029","pred":"boundBy","subj":"T4453","obj":"T4454"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

2_test

{"project":"2_test","denotations":[{"id":"21639951-21173796-4289456","span":{"begin":240,"end":242},"obj":"21173796"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

pmc-enju-pas

UBERON-AE

{"project":"UBERON-AE","denotations":[{"id":"T4236","span":{"begin":197,"end":202},"obj":"http://purl.obolibrary.org/obo/UBERON_0000062"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

GO-BP

{"project":"GO-BP","denotations":[{"id":"T5595","span":{"begin":372,"end":375},"obj":"http://purl.obolibrary.org/obo/GO_0004704"},{"id":"T5594","span":{"begin":197,"end":214},"obj":"http://purl.obolibrary.org/obo/GO_0048513"},{"id":"T5593","span":{"begin":203,"end":214},"obj":"http://purl.obolibrary.org/obo/GO_0032502"},{"id":"T5592","span":{"begin":165,"end":176},"obj":"http://purl.obolibrary.org/obo/GO_0032502"},{"id":"T5591","span":{"begin":160,"end":176},"obj":"http://purl.obolibrary.org/obo/GO_0048468"},{"id":"T5590","span":{"begin":158,"end":176},"obj":"http://purl.obolibrary.org/obo/GO_0002329"},{"id":"T5589","span":{"begin":158,"end":176},"obj":"http://purl.obolibrary.org/obo/GO_0002328"},{"id":"T5519","span":{"begin":330,"end":345},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

GO-MF

{"project":"GO-MF","denotations":[{"id":"T5674","span":{"begin":372,"end":375},"obj":"http://purl.obolibrary.org/obo/GO_0004704"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

GO-CC

{"project":"GO-CC","denotations":[{"id":"T5691","span":{"begin":160,"end":164},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T5687","span":{"begin":42,"end":52},"obj":"http://purl.obolibrary.org/obo/GO_0000502"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

sentences

{"project":"sentences","denotations":[{"id":"T4257","span":{"begin":0,"end":377},"obj":"Sentence"},{"id":"T69","span":{"begin":0,"end":377},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

simple1

{"project":"simple1","denotations":[{"id":"T5866","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T5865","span":{"begin":349,"end":370},"obj":"Protein"},{"id":"T5864","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T5863","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T5862","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T5861","span":{"begin":17,"end":21},"obj":"Protein"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

BioNLP16_DUT

{"project":"BioNLP16_DUT","denotations":[{"id":"T7948","span":{"begin":315,"end":324},"obj":"Positive_regulation"},{"id":"T7947","span":{"begin":104,"end":113},"obj":"Regulation"},{"id":"T7895","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T7894","span":{"begin":349,"end":370},"obj":"Protein"},{"id":"T7893","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T7892","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T7891","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T7890","span":{"begin":17,"end":21},"obj":"Protein"}],"relations":[{"id":"R5470","pred":"themeOf","subj":"T7892","obj":"T7947"},{"id":"R5476","pred":"themeOf","subj":"T7893","obj":"T7948"},{"id":"R5477","pred":"themeOf","subj":"T7893","obj":"T7948"},{"id":"R5478","pred":"causeOf","subj":"T7894","obj":"T7948"},{"id":"R5480","pred":"causeOf","subj":"T7895","obj":"T7948"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

BioNLP16_Messiy

{"project":"BioNLP16_Messiy","denotations":[{"id":"T7067","span":{"begin":315,"end":324},"obj":"Positive_regulation"},{"id":"T7018","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T7017","span":{"begin":349,"end":370},"obj":"Protein"},{"id":"T7016","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T7015","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T7014","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T7013","span":{"begin":17,"end":21},"obj":"Protein"}],"relations":[{"id":"R4952","pred":"causeOf","subj":"T7016","obj":"T7067"},{"id":"R4954","pred":"themeOf","subj":"T7017","obj":"T7067"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

bionlp-st-ge-2016-test-ihmc

{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T8166","span":{"begin":56,"end":60},"obj":"Protein"},{"id":"T8128","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T8101","span":{"begin":35,"end":60},"obj":"Entity"},{"id":"T8082","span":{"begin":244,"end":274},"obj":"Protein"},{"id":"T8079","span":{"begin":90,"end":95},"obj":"Protein"},{"id":"T8043","span":{"begin":17,"end":21},"obj":"Protein"},{"id":"T8001","span":{"begin":346,"end":376},"obj":"Protein"},{"id":"T8000","span":{"begin":132,"end":177},"obj":"Protein"},{"id":"T7990","span":{"begin":297,"end":305},"obj":"Protein"},{"id":"T7971","span":{"begin":158,"end":164},"obj":"Entity"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

bionlp-st-ge-2016-test-tees

{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T7515","span":{"begin":315,"end":324},"obj":"Positive_regulation"},{"id":"T7514","span":{"begin":315,"end":324},"obj":"Positive_regulation"},{"id":"T7513","span":{"begin":315,"end":324},"obj":"Positive_regulation"},{"id":"T7512","span":{"begin":315,"end":324},"obj":"Positive_regulation"},{"id":"T7511","span":{"begin":330,"end":345},"obj":"Phosphorylation"},{"id":"T7510","span":{"begin":330,"end":345},"obj":"Phosphorylation"},{"id":"T7509","span":{"begin":315,"end":324},"obj":"Positive_regulation"},{"id":"T7508","span":{"begin":287,"end":296},"obj":"Positive_regulation"},{"id":"T7507","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T7506","span":{"begin":349,"end":370},"obj":"Protein"},{"id":"T7505","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T7504","span":{"begin":261,"end":266},"obj":"Protein"},{"id":"T7503","span":{"begin":93,"end":95},"obj":"Protein"},{"id":"T7502","span":{"begin":85,"end":92},"obj":"Protein"},{"id":"T7501","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T7500","span":{"begin":17,"end":21},"obj":"Protein"}],"relations":[{"id":"R5190","pred":"themeOf","subj":"T7505","obj":"T7508"},{"id":"R5191","pred":"themeOf","subj":"T7505","obj":"T7509"},{"id":"R5192","pred":"themeOf","subj":"T7505","obj":"T7510"},{"id":"R5194","pred":"themeOf","subj":"T7507","obj":"T7511"},{"id":"R5197","pred":"Cause","subj":"T7509","obj":"T7507"},{"id":"R5198","pred":"themeOf","subj":"T7510","obj":"T7512"},{"id":"R5199","pred":"themeOf","subj":"T7510","obj":"T7514"},{"id":"R5200","pred":"themeOf","subj":"T7511","obj":"T7513"},{"id":"R5201","pred":"themeOf","subj":"T7511","obj":"T7515"},{"id":"R5203","pred":"Cause","subj":"T7512","obj":"T7506"},{"id":"R5205","pred":"Cause","subj":"T7513","obj":"T7506"},{"id":"R5206","pred":"Cause","subj":"T7514","obj":"T7507"},{"id":"R5207","pred":"Cause","subj":"T7515","obj":"T7507"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

test3

{"project":"test3","denotations":[{"id":"T4190","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T4189","span":{"begin":349,"end":370},"obj":"Protein"},{"id":"T4188","span":{"begin":330,"end":345},"obj":"Phosphorylation"},{"id":"T4187","span":{"begin":315,"end":324},"obj":"Positive_regulation"},{"id":"T4186","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T4185","span":{"begin":287,"end":296},"obj":"Regulation"},{"id":"T4184","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T4183","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T4182","span":{"begin":17,"end":21},"obj":"Protein"},{"id":"T4060","span":{"begin":372,"end":375},"obj":"Protein"},{"id":"T4059","span":{"begin":349,"end":370},"obj":"Protein"},{"id":"T4058","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T4057","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T4056","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T4055","span":{"begin":17,"end":21},"obj":"Protein"}],"relations":[{"id":"R2882","pred":"themeOf","subj":"T4186","obj":"T4188"},{"id":"R2883","pred":"causeOf","subj":"T4186","obj":"T4185"},{"id":"R2884","pred":"themeOf","subj":"T4186","obj":"T4187"},{"id":"R2885","pred":"causeOf","subj":"T4189","obj":"T4187"},{"id":"R2886","pred":"causeOf","subj":"T4189","obj":"T4188"},{"id":"R2887","pred":"equivalentTo","subj":"T4190","obj":"T4189"}],"text":"In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK)."}

PMC:3218875 / 12807-13184 JSONTXT

Annnotations TAB JSON ListView MergeView

PMC:3218875 / 12807-13184 JSON TXT