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PMC:3218875 / 12807-13184 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T3970 330-345 Phosphorylation denotes phosphorylation
T3916 372-375 Protein denotes NIK
T3915 349-370 Protein denotes NF-κB inducing kinase
T3914 300-304 Protein denotes IKK1
T3913 85-89 Protein denotes RelB
T3912 56-59 Protein denotes p52
T3911 17-21 Protein denotes p100
R2803 T3911 T3970 themeOf p100,phosphorylation
R2804 T3915 T3970 causeOf NF-κB inducing kinase,phosphorylation
R2805 T3916 T3915 equivalentTo NIK,NF-κB inducing kinase

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6620 376-377 . denotes .
T6619 375-376 -RRB- denotes )
T6618 372-375 NNP denotes NIK
T6617 371-372 -LRB- denotes (
T6616 364-370 NN denotes kinase
T6615 355-363 VBG denotes inducing
T6614 349-354 JJ denotes NF-κB
T6613 346-348 IN denotes by
T6612 330-345 NN denotes phosphorylation
T6611 325-329 IN denotes upon
T6610 315-324 VBN denotes activated
T6609 312-314 VBZ denotes is
T6608 306-311 WDT denotes which
T6607 304-305 , denotes ,
T6606 300-304 NNP denotes IKK1
T6605 297-299 IN denotes on
T6604 287-296 JJ denotes dependent
T6603 278-286 RB denotes strictly
T6602 275-277 VBZ denotes is
T6601 267-274 NN denotes pathway
T6600 261-266 NN denotes NF-κB
T6599 248-260 JJ denotes noncanonical
T6598 244-247 DT denotes The
T6597 242-243 NNP denotes ]
T6596 240-242 CD denotes 27
T6595 239-240 NNP denotes [
T6594 220-238 NN denotes osteoclastogenesis
T6593 216-219 CC denotes and
T6592 214-215 , denotes ,
T6591 203-214 NN denotes development
T6590 197-202 NN denotes organ
T6589 188-196 JJ denotes lymphoid
T6588 178-187 JJ denotes secondary
T6587 176-177 , denotes ,
T6586 165-176 NN denotes development
T6585 158-164 JJ denotes B-cell
T6584 150-157 VBP denotes control
T6583 145-149 WDT denotes that
T6582 139-144 NNS denotes genes
T6581 132-138 NN denotes target
T6580 129-131 IN denotes of
T6579 125-128 NN denotes set
T6578 116-124 JJ denotes distinct
T6577 114-115 DT denotes a
T6576 104-113 VBZ denotes regulates
T6575 96-103 NN denotes subunit
T6574 90-95 NNP denotes NF-κB
T6573 85-89 NNP denotes RelB
T6572 81-84 DT denotes the
T6571 76-80 IN denotes with
T6570 67-75 RB denotes together
T6569 61-66 WDT denotes which
T6568 59-60 , denotes ,
T6567 56-59 VB denotes p52
T6566 53-55 TO denotes to
T6565 42-52 JJ denotes proteasome
T6564 38-41 DT denotes the
T6563 35-37 IN denotes by
T6562 25-34 VBN denotes processed
T6561 22-24 VBZ denotes is
T6560 17-21 NN denotes p100
T6559 15-16 , denotes ,
T6558 8-15 NN denotes pathway
T6557 3-7 DT denotes this
T6556 0-2 IN denotes In
R4560 T6556 T6562 prep In,processed
R4561 T6557 T6558 det this,pathway
R4563 T6558 T6556 pobj pathway,In
R4564 T6559 T6562 punct ",",processed
R4565 T6560 T6562 nsubjpass p100,processed
R4566 T6561 T6562 auxpass is,processed
R4568 T6562 T6562 ROOT processed,processed
R4569 T6563 T6562 agent by,processed
R4571 T6564 T6565 det the,proteasome
R4572 T6565 T6563 pobj proteasome,by
R4573 T6566 T6565 prep to,proteasome
R4575 T6567 T6566 pobj p52,to
R4576 T6568 T6567 punct ",",p52
R4578 T6569 T6576 nsubj which,regulates
R4580 T6570 T6571 advmod together,with
R4582 T6571 T6576 prep with,regulates
R4583 T6572 T6575 det the,subunit
R4585 T6573 T6575 compound RelB,subunit
R4586 T6574 T6575 compound NF-κB,subunit
R4587 T6575 T6571 pobj subunit,with
R4588 T6576 T6565 relcl regulates,proteasome
R4590 T6577 T6579 det a,set
R4591 T6578 T6579 amod distinct,set
R4593 T6579 T6576 dobj set,regulates
R4594 T6580 T6579 prep of,set
R4595 T6581 T6582 compound target,genes
R4597 T6582 T6580 pobj genes,of
R4598 T6583 T6584 nsubj that,control
R4599 T6584 T6582 relcl control,genes
R4600 T6585 T6586 amod B-cell,development
R4601 T6586 T6584 dobj development,control
R4602 T6587 T6586 punct ",",development
R4603 T6588 T6591 amod secondary,development
R4604 T6589 T6591 amod lymphoid,development
R4606 T6590 T6591 compound organ,development
R4607 T6591 T6586 conj development,development
R4608 T6592 T6591 punct ",",development
R4609 T6593 T6591 cc and,development
R4611 T6594 T6595 compound osteoclastogenesis,[
R4612 T6595 T6579 appos [,set
R4613 T6596 T6597 nummod 27,]
R4615 T6597 T6597 ROOT ],]
R4616 T6598 T6601 det The,pathway
R4617 T6599 T6601 amod noncanonical,pathway
R4619 T6600 T6601 compound NF-κB,pathway
R4620 T6601 T6602 nsubj pathway,is
R4622 T6602 T6602 ROOT is,is
R4623 T6603 T6604 advmod strictly,dependent
R4624 T6604 T6602 acomp dependent,is
R4625 T6605 T6604 prep on,dependent
R4627 T6606 T6605 pobj IKK1,on
R4629 T6607 T6606 punct ",",IKK1
R4630 T6608 T6610 nsubjpass which,activated
R4631 T6609 T6610 auxpass is,activated
R4633 T6610 T6606 relcl activated,IKK1
R4634 T6611 T6610 prep upon,activated
R4635 T6612 T6611 pobj phosphorylation,upon
R4636 T6613 T6610 agent by,activated
R4638 T6614 T6615 advmod NF-κB,inducing
R4639 T6615 T6613 pcomp inducing,by
R4640 T6616 T6615 dobj kinase,inducing
R4642 T6617 T6618 punct (,NIK
R4643 T6618 T6616 parataxis NIK,kinase
R4644 T6619 T6618 punct ),NIK
R4646 T6620 T6602 punct .,is

DLUT931

Id Subject Object Predicate Lexical cue
T7215 315-324 Positive_regulation denotes activated
T7214 25-34 Binding denotes processed
T7160 372-375 Protein denotes NIK
T7159 349-370 Protein denotes NF-κB inducing kinase
T7158 300-304 Protein denotes IKK1
T7157 85-89 Protein denotes RelB
T7156 56-59 Protein denotes p52
T7155 17-21 Protein denotes p100
R5068 T7155 T7214 themeOf p100,processed
R5069 T7156 T7214 themeOf p52,processed
R5070 T7158 T7215 themeOf IKK1,activated
R5071 T7159 T7215 causeOf NF-κB inducing kinase,activated

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6893 300-304 http://www.uniprot.org/uniprot/Q60680-2 denotes IKK1
T6888 300-304 http://www.uniprot.org/uniprot/O15111 denotes IKK1
T6875 56-59 http://www.uniprot.org/uniprot/Q00653 denotes p52
T6928 372-375 http://www.uniprot.org/uniprot/Q99558 denotes NIK
T6927 85-89 http://www.uniprot.org/uniprot/Q01201 denotes RelB

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4537 372-375 Protein denotes NIK
T4536 349-370 Protein denotes NF-κB inducing kinase
T4535 300-304 Protein denotes IKK1
T4534 85-89 Protein denotes RelB
T4533 56-59 Protein denotes p52
T4532 17-21 Protein denotes p100

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T4454 300-304 Antecedent denotes IKK1
T4453 306-311 Anaphor denotes which
R3029 T4453 T4454 boundBy which,IKK1

2_test

Id Subject Object Predicate Lexical cue
21639951-21173796-4289456 240-242 21173796 denotes 27

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5252 375-376 -RRB- denotes )
T5251 372-375 NN denotes NIK
T5250 371-372 -LRB- denotes (
T5249 364-370 NN denotes kinase
T5248 355-363 VB denotes inducing
T5247 349-354 NN denotes NF-κB
T5246 346-348 IN denotes by
T5245 330-345 NN denotes phosphorylation
T5244 325-329 IN denotes upon
T5243 315-324 VB denotes activated
T5242 312-314 VB denotes is
T5241 306-311 WDT denotes which
T5240 304-305 -COMMA- denotes ,
T5239 300-304 NN denotes IKK1
T5238 297-299 IN denotes on
T5237 287-296 JJ denotes dependent
T5236 278-286 RB denotes strictly
T5235 275-277 VB denotes is
T5234 267-274 NN denotes pathway
T5233 261-266 NN denotes NF-κB
T5232 248-260 JJ denotes noncanonical
T5231 244-247 DT denotes The
T5230 242-243 -RRB- denotes ]
T5229 240-242 CD denotes 27
T5228 239-240 -LRB- denotes [
T5227 220-238 NN denotes osteoclastogenesis
T5226 216-219 CC denotes and
T5225 214-215 -COMMA- denotes ,
T5224 203-214 NN denotes development
T5223 197-202 NN denotes organ
T5222 188-196 JJ denotes lymphoid
T5221 178-187 JJ denotes secondary
T5220 176-177 -COMMA- denotes ,
T5219 165-176 NN denotes development
T5218 158-164 NN denotes B-cell
T5217 150-157 VB denotes control
T5216 145-149 WDT denotes that
T5215 139-144 NN denotes genes
T5214 132-138 NN denotes target
T5213 129-131 IN denotes of
T5212 125-128 NN denotes set
T5211 116-124 JJ denotes distinct
T5210 114-115 DT denotes a
T5209 104-113 VB denotes regulates
T5208 96-103 NN denotes subunit
T5207 90-95 NN denotes NF-κB
T5206 85-89 NN denotes RelB
T5205 81-84 DT denotes the
T5204 76-80 IN denotes with
T5203 67-75 RB denotes together
T5202 61-66 WDT denotes which
T5201 59-60 -COMMA- denotes ,
T5200 56-59 NN denotes p52
T5199 53-55 TO denotes to
T5198 42-52 NN denotes proteasome
T5197 38-41 DT denotes the
T5196 35-37 IN denotes by
T5195 25-34 VB denotes processed
T5194 22-24 VB denotes is
T5193 17-21 NN denotes p100
T5192 15-16 -COMMA- denotes ,
T5191 8-15 NN denotes pathway
T5190 3-7 DT denotes this
T5189 0-2 IN denotes In
R3656 T5191 T5189 arg2Of pathway,In
R3657 T5191 T5190 arg1Of pathway,this
R3658 T5193 T5194 arg1Of p100,is
R3659 T5193 T5195 arg2Of p100,processed
R3660 T5195 T5194 arg2Of processed,is
R3661 T5195 T5226 arg1Of processed,and
R3662 T5198 T5199 arg1Of proteasome,to
R3663 T5198 T5201 arg1Of proteasome,","
R3664 T5198 T5202 arg1Of proteasome,which
R3665 T5198 T5209 arg1Of proteasome,regulates
R3666 T5198 T5220 arg1Of proteasome,","
R3667 T5200 T5199 arg2Of p52,to
R3668 T5203 T5204 arg1Of together,with
R3669 T5208 T5204 arg2Of subunit,with
R3670 T5208 T5205 arg1Of subunit,the
R3671 T5208 T5206 arg1Of subunit,RelB
R3672 T5208 T5207 arg1Of subunit,NF-κB
R3673 T5209 T5203 arg1Of regulates,together
R3674 T5212 T5209 arg2Of set,regulates
R3675 T5212 T5210 arg1Of set,a
R3676 T5212 T5211 arg1Of set,distinct
R3677 T5212 T5213 arg1Of set,of
R3678 T5215 T5213 arg2Of genes,of
R3679 T5215 T5214 arg1Of genes,target
R3680 T5215 T5216 arg1Of genes,that
R3681 T5215 T5217 arg1Of genes,control
R3682 T5219 T5217 arg2Of development,control
R3683 T5219 T5218 arg1Of development,B-cell
R3684 T5220 T5195 arg1Of ",",processed
R3685 T5220 T5196 arg2Of ",",by
R3686 T5220 T5197 arg1Of ",",the
R3687 T5224 T5220 arg2Of development,","
R3688 T5224 T5221 arg1Of development,secondary
R3689 T5224 T5222 arg1Of development,lymphoid
R3690 T5224 T5223 arg1Of development,organ
R3691 T5226 T5189 arg1Of and,In
R3692 T5226 T5192 arg1Of and,","
R3693 T5226 T5225 arg1Of and,","
R3694 T5229 T5228 arg2Of 27,[
R3695 T5230 T5228 arg3Of ],[
R3696 T5232 T5231 arg1Of noncanonical,The
R3697 T5234 T5227 arg1Of pathway,osteoclastogenesis
R3698 T5234 T5228 arg1Of pathway,[
R3699 T5234 T5232 arg1Of pathway,noncanonical
R3700 T5234 T5233 arg1Of pathway,NF-κB
R3701 T5234 T5235 arg1Of pathway,is
R3702 T5234 T5237 arg1Of pathway,dependent
R3703 T5235 T5226 arg2Of is,and
R3704 T5237 T5235 arg2Of dependent,is
R3705 T5237 T5236 arg1Of dependent,strictly
R3706 T5237 T5238 arg1Of dependent,on
R3707 T5239 T5238 arg2Of IKK1,on
R3708 T5239 T5240 arg1Of IKK1,","
R3709 T5239 T5241 arg1Of IKK1,which
R3710 T5239 T5242 arg1Of IKK1,is
R3711 T5239 T5243 arg2Of IKK1,activated
R3712 T5243 T5242 arg2Of activated,is
R3713 T5243 T5244 arg1Of activated,upon
R3714 T5245 T5244 arg2Of phosphorylation,upon
R3715 T5245 T5246 arg1Of phosphorylation,by
R3716 T5247 T5246 arg2Of NF-κB,by
R3717 T5247 T5248 arg1Of NF-κB,inducing
R3718 T5249 T5248 arg2Of kinase,inducing
R3719 T5249 T5250 arg1Of kinase,(
R3720 T5251 T5250 arg2Of NIK,(
R3721 T5252 T5250 arg3Of ),(

UBERON-AE

Id Subject Object Predicate Lexical cue
T4236 197-202 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organ

GO-BP

Id Subject Object Predicate Lexical cue
T5595 372-375 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK
T5594 197-214 http://purl.obolibrary.org/obo/GO_0048513 denotes organ development
T5593 203-214 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T5592 165-176 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T5591 160-176 http://purl.obolibrary.org/obo/GO_0048468 denotes cell development
T5590 158-176 http://purl.obolibrary.org/obo/GO_0002329 denotes B-cell development
T5589 158-176 http://purl.obolibrary.org/obo/GO_0002328 denotes B-cell development
T5519 330-345 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-MF

Id Subject Object Predicate Lexical cue
T5674 372-375 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK

GO-CC

Id Subject Object Predicate Lexical cue
T5691 160-164 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T5687 42-52 http://purl.obolibrary.org/obo/GO_0000502 denotes proteasome

sentences

Id Subject Object Predicate Lexical cue
T4257 0-377 Sentence denotes In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK).
T69 0-377 Sentence denotes In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK).

simple1

Id Subject Object Predicate Lexical cue
T5866 372-375 Protein denotes NIK
T5865 349-370 Protein denotes NF-κB inducing kinase
T5864 300-304 Protein denotes IKK1
T5863 85-89 Protein denotes RelB
T5862 56-59 Protein denotes p52
T5861 17-21 Protein denotes p100

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7948 315-324 Positive_regulation denotes activated
T7947 104-113 Regulation denotes regulates
T7895 372-375 Protein denotes NIK
T7894 349-370 Protein denotes NF-κB inducing kinase
T7893 300-304 Protein denotes IKK1
T7892 85-89 Protein denotes RelB
T7891 56-59 Protein denotes p52
T7890 17-21 Protein denotes p100
R5470 T7892 T7947 themeOf RelB,regulates
R5476 T7893 T7948 themeOf IKK1,activated
R5477 T7893 T7948 themeOf IKK1,activated
R5478 T7894 T7948 causeOf NF-κB inducing kinase,activated
R5480 T7895 T7948 causeOf NIK,activated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7067 315-324 Positive_regulation denotes activated
T7018 372-375 Protein denotes NIK
T7017 349-370 Protein denotes NF-κB inducing kinase
T7016 300-304 Protein denotes IKK1
T7015 85-89 Protein denotes RelB
T7014 56-59 Protein denotes p52
T7013 17-21 Protein denotes p100
R4952 T7016 T7067 causeOf IKK1,activated
R4954 T7017 T7067 themeOf NF-κB inducing kinase,activated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8166 56-60 Protein denotes p52,
T8128 372-375 Protein denotes NIK
T8101 35-60 Entity denotes by the proteasome to p52,
T8082 244-274 Protein denotes The noncanonical NF-κB pathway
T8079 90-95 Protein denotes NF-κB
T8043 17-21 Protein denotes p100
T8001 346-376 Protein denotes by NF-κB inducing kinase (NIK)
T8000 132-177 Protein denotes target genes that control B-cell development,
T7990 297-305 Protein denotes on IKK1,
T7971 158-164 Entity denotes B-cell

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7515 315-324 Positive_regulation denotes activated
T7514 315-324 Positive_regulation denotes activated
T7513 315-324 Positive_regulation denotes activated
T7512 315-324 Positive_regulation denotes activated
T7511 330-345 Phosphorylation denotes phosphorylation
T7510 330-345 Phosphorylation denotes phosphorylation
T7509 315-324 Positive_regulation denotes activated
T7508 287-296 Positive_regulation denotes dependent
T7507 372-375 Protein denotes NIK
T7506 349-370 Protein denotes NF-κB inducing kinase
T7505 300-304 Protein denotes IKK1
T7504 261-266 Protein denotes NF-κB
T7503 93-95 Protein denotes κB
T7502 85-92 Protein denotes RelB NF
T7501 56-59 Protein denotes p52
T7500 17-21 Protein denotes p100
R5190 T7505 T7508 themeOf IKK1,dependent
R5191 T7505 T7509 themeOf IKK1,activated
R5192 T7505 T7510 themeOf IKK1,phosphorylation
R5194 T7507 T7511 themeOf NIK,phosphorylation
R5197 T7509 T7507 Cause activated,NIK
R5198 T7510 T7512 themeOf phosphorylation,activated
R5199 T7510 T7514 themeOf phosphorylation,activated
R5200 T7511 T7513 themeOf phosphorylation,activated
R5201 T7511 T7515 themeOf phosphorylation,activated
R5203 T7512 T7506 Cause activated,NF-κB inducing kinase
R5205 T7513 T7506 Cause activated,NF-κB inducing kinase
R5206 T7514 T7507 Cause activated,NIK
R5207 T7515 T7507 Cause activated,NIK

test3

Id Subject Object Predicate Lexical cue
T4190 372-375 Protein denotes NIK
T4189 349-370 Protein denotes NF-κB inducing kinase
T4188 330-345 Phosphorylation denotes phosphorylation
T4187 315-324 Positive_regulation denotes activated
T4186 300-304 Protein denotes IKK1
T4185 287-296 Regulation denotes dependent
T4184 85-89 Protein denotes RelB
T4183 56-59 Protein denotes p52
T4182 17-21 Protein denotes p100
T4060 372-375 Protein denotes NIK
T4059 349-370 Protein denotes NF-κB inducing kinase
T4058 300-304 Protein denotes IKK1
T4057 85-89 Protein denotes RelB
T4056 56-59 Protein denotes p52
T4055 17-21 Protein denotes p100
R2882 T4186 T4188 themeOf IKK1,phosphorylation
R2883 T4186 T4185 causeOf IKK1,dependent
R2884 T4186 T4187 themeOf IKK1,activated
R2885 T4189 T4187 causeOf NF-κB inducing kinase,activated
R2886 T4189 T4188 causeOf NF-κB inducing kinase,phosphorylation
R2887 T4190 T4189 equivalentTo NIK,NF-κB inducing kinase