PMC:3148254 / 9999-10182
Annnotations
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15380 | 21-25 | Protein | denotes | HOIP |
| T15381 | 26-35 | Negative_regulation | denotes | deficient |
| T15382 | 37-41 | Protein | denotes | HOIP |
| T15383 | 85-89 | Protein | denotes | HOIP |
| T15384 | 90-98 | Negative_regulation | denotes | reversed |
| T15385 | 99-108 | Negative_regulation | denotes | defective |
| T15386 | 109-113 | Protein | denotes | CD80 |
| T15387 | 114-126 | Positive_regulation | denotes | upregulation |
| R12176 | T15380 | T15381 | themeOf | HOIP,deficient |
| R12177 | T15385 | T15384 | themeOf | defective,reversed |
| R12178 | T15386 | T15387 | themeOf | CD80,upregulation |
| R12179 | T15387 | T15385 | themeOf | upregulation,defective |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15655 | 109-113 | Protein | denotes | CD80 |
| T15656 | 114-126 | Positive_regulation | denotes | upregulation |
| T15657 | 90-98 | Negative_regulation | denotes | reversed |
| R12395 | T15655 | T15656 | themeOf | CD80,upregulation |
| R12396 | T15656 | T15657 | themeOf | upregulation,reversed |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15667 | 21-25 | Protein | denotes | HOIP |
| T15668 | 26-35 | Negative_regulation | denotes | deficient |
| T15669 | 37-41 | Protein | denotes | HOIP |
| T15670 | 85-89 | Protein | denotes | HOIP |
| T15671 | 90-98 | Negative_regulation | denotes | reversed |
| T15672 | 99-108 | Negative_regulation | denotes | defective |
| T15673 | 109-113 | Protein | denotes | CD80 |
| T15674 | 114-126 | Positive_regulation | denotes | upregulation |
| R12403 | T15667 | T15668 | themeOf | HOIP,deficient |
| R12404 | T15672 | T15671 | themeOf | defective,reversed |
| R12405 | T15673 | T15674 | themeOf | CD80,upregulation |
| R12406 | T15674 | T15672 | themeOf | upregulation,defective |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15544 | 0-12 | NN | denotes | Transduction |
| T15545 | 13-15 | IN | denotes | of |
| T15546 | 16-20 | CC | denotes | both |
| T15547 | 21-35 | JJ | denotes | HOIP-deficient |
| T15548 | 36-37 | -LRB- | denotes | ( |
| T15549 | 37-44 | JJ | denotes | HOIP-/- |
| T15550 | 44-45 | -RRB- | denotes | ) |
| T15551 | 46-52 | NN | denotes | clones |
| T15552 | 53-57 | IN | denotes | with |
| T15553 | 58-59 | DT | denotes | a |
| T15554 | 60-70 | NN | denotes | retrovirus |
| T15555 | 71-79 | VB | denotes | encoding |
| T15556 | 80-89 | NN | denotes | FLAG-HOIP |
| T15557 | 90-98 | VB | denotes | reversed |
| T15558 | 99-108 | JJ | denotes | defective |
| T15559 | 109-113 | NN | denotes | CD80 |
| T15560 | 114-126 | NN | denotes | upregulation |
| T15561 | 126-127 | -COMMA- | denotes | , |
| T15562 | 128-133 | IN | denotes | while |
| T15563 | 134-146 | NN | denotes | transduction |
| T15564 | 147-151 | IN | denotes | with |
| T15565 | 152-154 | DT | denotes | an |
| T15566 | 155-160 | JJ | denotes | empty |
| T15567 | 161-167 | NN | denotes | vector |
| T15568 | 168-169 | -LRB- | denotes | ( |
| T15569 | 169-173 | NN | denotes | pMIP |
| T15570 | 173-174 | -RRB- | denotes | ) |
| T15571 | 175-178 | VB | denotes | did |
| T15572 | 179-182 | RB | denotes | not |
| R12334 | T15544 | T15545 | arg1Of | Transduction,of |
| R12335 | T15544 | T15557 | arg1Of | Transduction,reversed |
| R12336 | T15547 | T15548 | arg1Of | HOIP-deficient,( |
| R12337 | T15549 | T15548 | arg2Of | HOIP-/-,( |
| R12338 | T15550 | T15548 | arg3Of | ),( |
| R12339 | T15551 | T15545 | arg2Of | clones,of |
| R12340 | T15551 | T15546 | arg1Of | clones,both |
| R12341 | T15551 | T15547 | arg1Of | clones,HOIP-deficient |
| R12342 | T15551 | T15552 | arg1Of | clones,with |
| R12343 | T15554 | T15552 | arg2Of | retrovirus,with |
| R12344 | T15554 | T15553 | arg1Of | retrovirus,a |
| R12345 | T15554 | T15555 | arg1Of | retrovirus,encoding |
| R12346 | T15556 | T15555 | arg2Of | FLAG-HOIP,encoding |
| R12347 | T15557 | T15561 | arg1Of | reversed,"," |
| R12348 | T15557 | T15562 | arg1Of | reversed,while |
| R12349 | T15560 | T15557 | arg2Of | upregulation,reversed |
| R12350 | T15560 | T15558 | arg1Of | upregulation,defective |
| R12351 | T15560 | T15559 | arg1Of | upregulation,CD80 |
| R12352 | T15563 | T15564 | arg1Of | transduction,with |
| R12353 | T15563 | T15571 | arg1Of | transduction,did |
| R12354 | T15567 | T15564 | arg2Of | vector,with |
| R12355 | T15567 | T15565 | arg1Of | vector,an |
| R12356 | T15567 | T15566 | arg1Of | vector,empty |
| R12357 | T15567 | T15568 | arg1Of | vector,( |
| R12358 | T15569 | T15568 | arg2Of | pMIP,( |
| R12359 | T15570 | T15568 | arg3Of | ),( |
| R12360 | T15571 | T15562 | arg2Of | did,while |
| R12361 | T15571 | T15572 | arg1Of | did,not |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15448 | 0-12 | NNP | denotes | Transduction |
| T15449 | 13-15 | IN | denotes | of |
| T15450 | 16-20 | DT | denotes | both |
| T15451 | 21-35 | JJ | denotes | HOIP-deficient |
| T15452 | 36-37 | -LRB- | denotes | ( |
| T15453 | 37-41 | SYM | denotes | HOIP |
| T15454 | 41-42 | : | denotes | - |
| T15455 | 42-43 | SYM | denotes | / |
| T15456 | 43-44 | : | denotes | - |
| T15457 | 44-45 | -RRB- | denotes | ) |
| T15458 | 46-52 | NNS | denotes | clones |
| T15459 | 53-57 | IN | denotes | with |
| T15460 | 58-59 | DT | denotes | a |
| T15461 | 60-70 | NN | denotes | retrovirus |
| T15462 | 71-79 | VBG | denotes | encoding |
| T15463 | 80-89 | NNP | denotes | FLAG-HOIP |
| T15464 | 90-98 | VBD | denotes | reversed |
| T15465 | 99-108 | JJ | denotes | defective |
| T15466 | 109-113 | NNP | denotes | CD80 |
| T15467 | 114-126 | NN | denotes | upregulation |
| T15468 | 126-127 | , | denotes | , |
| T15469 | 128-133 | IN | denotes | while |
| T15470 | 134-146 | NN | denotes | transduction |
| T15471 | 147-151 | IN | denotes | with |
| T15472 | 152-154 | DT | denotes | an |
| T15473 | 155-160 | JJ | denotes | empty |
| T15474 | 161-167 | NN | denotes | vector |
| T15475 | 168-169 | -LRB- | denotes | ( |
| T15476 | 169-173 | NNP | denotes | pMIP |
| T15477 | 173-174 | -RRB- | denotes | ) |
| T15478 | 175-178 | VBD | denotes | did |
| T15479 | 179-182 | RB | denotes | not |
| T15480 | 182-183 | . | denotes | . |
| R12236 | T15448 | T15464 | nsubj | Transduction,reversed |
| R12237 | T15449 | T15448 | prep | of,Transduction |
| R12238 | T15450 | T15451 | det | both,HOIP-deficient |
| R12239 | T15451 | T15449 | pobj | HOIP-deficient,of |
| R12240 | T15452 | T15451 | punct | (,HOIP-deficient |
| R12241 | T15453 | T15455 | amod | HOIP,/ |
| R12242 | T15454 | T15455 | punct | -,/ |
| R12243 | T15455 | T15455 | ROOT | /,/ |
| R12244 | T15456 | T15455 | punct | -,/ |
| R12245 | T15457 | T15455 | punct | ),/ |
| R12246 | T15458 | T15464 | nsubj | clones,reversed |
| R12247 | T15459 | T15458 | prep | with,clones |
| R12248 | T15460 | T15461 | det | a,retrovirus |
| R12249 | T15461 | T15459 | pobj | retrovirus,with |
| R12250 | T15462 | T15461 | acl | encoding,retrovirus |
| R12251 | T15463 | T15464 | nsubj | FLAG-HOIP,reversed |
| R12252 | T15464 | T15464 | ROOT | reversed,reversed |
| R12253 | T15465 | T15467 | amod | defective,upregulation |
| R12254 | T15466 | T15467 | compound | CD80,upregulation |
| R12255 | T15467 | T15464 | dobj | upregulation,reversed |
| R12256 | T15468 | T15464 | punct | ",",reversed |
| R12257 | T15469 | T15470 | mark | while,transduction |
| R12258 | T15470 | T15464 | advcl | transduction,reversed |
| R12259 | T15471 | T15470 | prep | with,transduction |
| R12260 | T15472 | T15474 | det | an,vector |
| R12261 | T15473 | T15474 | amod | empty,vector |
| R12262 | T15474 | T15471 | pobj | vector,with |
| R12263 | T15475 | T15474 | punct | (,vector |
| R12264 | T15476 | T15474 | appos | pMIP,vector |
| R12265 | T15477 | T15474 | punct | ),vector |
| R12266 | T15478 | T15480 | aux | did,. |
| R12267 | T15479 | T15478 | neg | not,did |
| R12268 | T15480 | T15464 | punct | .,reversed |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15595 | 0-12 | http://purl.obolibrary.org/obo/GO_0009293 | denotes | Transduction |
| T15596 | 134-146 | http://purl.obolibrary.org/obo/GO_0009293 | denotes | transduction |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15390 | 0-183 | Sentence | denotes | Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. |
| T69 | 0-183 | Sentence | denotes | Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15587 | 21-25 | Q96EP0 | denotes | HOIP |
| T15588 | 37-41 | Q96EP0 | denotes | HOIP |
| T15589 | 85-89 | Q96EP0 | denotes | HOIP |
| T15590 | 109-113 | P33681 | denotes | CD80 |
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15364 | 21-25 | Protein | denotes | HOIP |
| T15365 | 26-35 | Negative_regulation | denotes | deficient |
| T15366 | 37-41 | Protein | denotes | HOIP |
| T15367 | 85-89 | Protein | denotes | HOIP |
| T15368 | 99-108 | Negative_regulation | denotes | defective |
| T15369 | 109-113 | Protein | denotes | CD80 |
| T15370 | 114-126 | Positive_regulation | denotes | upregulation |
| R12167 | T15364 | T15365 | themeOf | HOIP,deficient |
| R12168 | T15369 | T15370 | themeOf | CD80,upregulation |
| R12169 | T15370 | T15368 | themeOf | upregulation,defective |