PMC:3148254 / 9999-10182 JSONTXT

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    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T15380","span":{"begin":21,"end":25},"obj":"Protein"},{"id":"T15381","span":{"begin":26,"end":35},"obj":"Negative_regulation"},{"id":"T15382","span":{"begin":37,"end":41},"obj":"Protein"},{"id":"T15383","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T15384","span":{"begin":90,"end":98},"obj":"Negative_regulation"},{"id":"T15385","span":{"begin":99,"end":108},"obj":"Negative_regulation"},{"id":"T15386","span":{"begin":109,"end":113},"obj":"Protein"},{"id":"T15387","span":{"begin":114,"end":126},"obj":"Positive_regulation"}],"relations":[{"id":"R12176","pred":"themeOf","subj":"T15380","obj":"T15381"},{"id":"R12177","pred":"themeOf","subj":"T15385","obj":"T15384"},{"id":"R12178","pred":"themeOf","subj":"T15386","obj":"T15387"},{"id":"R12179","pred":"themeOf","subj":"T15387","obj":"T15385"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T15655","span":{"begin":109,"end":113},"obj":"Protein"},{"id":"T15656","span":{"begin":114,"end":126},"obj":"Positive_regulation"},{"id":"T15657","span":{"begin":90,"end":98},"obj":"Negative_regulation"}],"relations":[{"id":"R12395","pred":"themeOf","subj":"T15655","obj":"T15656"},{"id":"R12396","pred":"themeOf","subj":"T15656","obj":"T15657"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T15667","span":{"begin":21,"end":25},"obj":"Protein"},{"id":"T15668","span":{"begin":26,"end":35},"obj":"Negative_regulation"},{"id":"T15669","span":{"begin":37,"end":41},"obj":"Protein"},{"id":"T15670","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T15671","span":{"begin":90,"end":98},"obj":"Negative_regulation"},{"id":"T15672","span":{"begin":99,"end":108},"obj":"Negative_regulation"},{"id":"T15673","span":{"begin":109,"end":113},"obj":"Protein"},{"id":"T15674","span":{"begin":114,"end":126},"obj":"Positive_regulation"}],"relations":[{"id":"R12403","pred":"themeOf","subj":"T15667","obj":"T15668"},{"id":"R12404","pred":"themeOf","subj":"T15672","obj":"T15671"},{"id":"R12405","pred":"themeOf","subj":"T15673","obj":"T15674"},{"id":"R12406","pred":"themeOf","subj":"T15674","obj":"T15672"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T15544","span":{"begin":0,"end":12},"obj":"NN"},{"id":"T15545","span":{"begin":13,"end":15},"obj":"IN"},{"id":"T15546","span":{"begin":16,"end":20},"obj":"CC"},{"id":"T15547","span":{"begin":21,"end":35},"obj":"JJ"},{"id":"T15548","span":{"begin":36,"end":37},"obj":"-LRB-"},{"id":"T15549","span":{"begin":37,"end":44},"obj":"JJ"},{"id":"T15550","span":{"begin":44,"end":45},"obj":"-RRB-"},{"id":"T15551","span":{"begin":46,"end":52},"obj":"NN"},{"id":"T15552","span":{"begin":53,"end":57},"obj":"IN"},{"id":"T15553","span":{"begin":58,"end":59},"obj":"DT"},{"id":"T15554","span":{"begin":60,"end":70},"obj":"NN"},{"id":"T15555","span":{"begin":71,"end":79},"obj":"VB"},{"id":"T15556","span":{"begin":80,"end":89},"obj":"NN"},{"id":"T15557","span":{"begin":90,"end":98},"obj":"VB"},{"id":"T15558","span":{"begin":99,"end":108},"obj":"JJ"},{"id":"T15559","span":{"begin":109,"end":113},"obj":"NN"},{"id":"T15560","span":{"begin":114,"end":126},"obj":"NN"},{"id":"T15561","span":{"begin":126,"end":127},"obj":"-COMMA-"},{"id":"T15562","span":{"begin":128,"end":133},"obj":"IN"},{"id":"T15563","span":{"begin":134,"end":146},"obj":"NN"},{"id":"T15564","span":{"begin":147,"end":151},"obj":"IN"},{"id":"T15565","span":{"begin":152,"end":154},"obj":"DT"},{"id":"T15566","span":{"begin":155,"end":160},"obj":"JJ"},{"id":"T15567","span":{"begin":161,"end":167},"obj":"NN"},{"id":"T15568","span":{"begin":168,"end":169},"obj":"-LRB-"},{"id":"T15569","span":{"begin":169,"end":173},"obj":"NN"},{"id":"T15570","span":{"begin":173,"end":174},"obj":"-RRB-"},{"id":"T15571","span":{"begin":175,"end":178},"obj":"VB"},{"id":"T15572","span":{"begin":179,"end":182},"obj":"RB"}],"relations":[{"id":"R12334","pred":"arg1Of","subj":"T15544","obj":"T15545"},{"id":"R12335","pred":"arg1Of","subj":"T15544","obj":"T15557"},{"id":"R12336","pred":"arg1Of","subj":"T15547","obj":"T15548"},{"id":"R12337","pred":"arg2Of","subj":"T15549","obj":"T15548"},{"id":"R12338","pred":"arg3Of","subj":"T15550","obj":"T15548"},{"id":"R12339","pred":"arg2Of","subj":"T15551","obj":"T15545"},{"id":"R12340","pred":"arg1Of","subj":"T15551","obj":"T15546"},{"id":"R12341","pred":"arg1Of","subj":"T15551","obj":"T15547"},{"id":"R12342","pred":"arg1Of","subj":"T15551","obj":"T15552"},{"id":"R12343","pred":"arg2Of","subj":"T15554","obj":"T15552"},{"id":"R12344","pred":"arg1Of","subj":"T15554","obj":"T15553"},{"id":"R12345","pred":"arg1Of","subj":"T15554","obj":"T15555"},{"id":"R12346","pred":"arg2Of","subj":"T15556","obj":"T15555"},{"id":"R12347","pred":"arg1Of","subj":"T15557","obj":"T15561"},{"id":"R12348","pred":"arg1Of","subj":"T15557","obj":"T15562"},{"id":"R12349","pred":"arg2Of","subj":"T15560","obj":"T15557"},{"id":"R12350","pred":"arg1Of","subj":"T15560","obj":"T15558"},{"id":"R12351","pred":"arg1Of","subj":"T15560","obj":"T15559"},{"id":"R12352","pred":"arg1Of","subj":"T15563","obj":"T15564"},{"id":"R12353","pred":"arg1Of","subj":"T15563","obj":"T15571"},{"id":"R12354","pred":"arg2Of","subj":"T15567","obj":"T15564"},{"id":"R12355","pred":"arg1Of","subj":"T15567","obj":"T15565"},{"id":"R12356","pred":"arg1Of","subj":"T15567","obj":"T15566"},{"id":"R12357","pred":"arg1Of","subj":"T15567","obj":"T15568"},{"id":"R12358","pred":"arg2Of","subj":"T15569","obj":"T15568"},{"id":"R12359","pred":"arg3Of","subj":"T15570","obj":"T15568"},{"id":"R12360","pred":"arg2Of","subj":"T15571","obj":"T15562"},{"id":"R12361","pred":"arg1Of","subj":"T15571","obj":"T15572"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T15448","span":{"begin":0,"end":12},"obj":"NNP"},{"id":"T15449","span":{"begin":13,"end":15},"obj":"IN"},{"id":"T15450","span":{"begin":16,"end":20},"obj":"DT"},{"id":"T15451","span":{"begin":21,"end":35},"obj":"JJ"},{"id":"T15452","span":{"begin":36,"end":37},"obj":"-LRB-"},{"id":"T15453","span":{"begin":37,"end":41},"obj":"SYM"},{"id":"T15454","span":{"begin":41,"end":42},"obj":":"},{"id":"T15455","span":{"begin":42,"end":43},"obj":"SYM"},{"id":"T15456","span":{"begin":43,"end":44},"obj":":"},{"id":"T15457","span":{"begin":44,"end":45},"obj":"-RRB-"},{"id":"T15458","span":{"begin":46,"end":52},"obj":"NNS"},{"id":"T15459","span":{"begin":53,"end":57},"obj":"IN"},{"id":"T15460","span":{"begin":58,"end":59},"obj":"DT"},{"id":"T15461","span":{"begin":60,"end":70},"obj":"NN"},{"id":"T15462","span":{"begin":71,"end":79},"obj":"VBG"},{"id":"T15463","span":{"begin":80,"end":89},"obj":"NNP"},{"id":"T15464","span":{"begin":90,"end":98},"obj":"VBD"},{"id":"T15465","span":{"begin":99,"end":108},"obj":"JJ"},{"id":"T15466","span":{"begin":109,"end":113},"obj":"NNP"},{"id":"T15467","span":{"begin":114,"end":126},"obj":"NN"},{"id":"T15468","span":{"begin":126,"end":127},"obj":","},{"id":"T15469","span":{"begin":128,"end":133},"obj":"IN"},{"id":"T15470","span":{"begin":134,"end":146},"obj":"NN"},{"id":"T15471","span":{"begin":147,"end":151},"obj":"IN"},{"id":"T15472","span":{"begin":152,"end":154},"obj":"DT"},{"id":"T15473","span":{"begin":155,"end":160},"obj":"JJ"},{"id":"T15474","span":{"begin":161,"end":167},"obj":"NN"},{"id":"T15475","span":{"begin":168,"end":169},"obj":"-LRB-"},{"id":"T15476","span":{"begin":169,"end":173},"obj":"NNP"},{"id":"T15477","span":{"begin":173,"end":174},"obj":"-RRB-"},{"id":"T15478","span":{"begin":175,"end":178},"obj":"VBD"},{"id":"T15479","span":{"begin":179,"end":182},"obj":"RB"},{"id":"T15480","span":{"begin":182,"end":183},"obj":"."}],"relations":[{"id":"R12236","pred":"nsubj","subj":"T15448","obj":"T15464"},{"id":"R12237","pred":"prep","subj":"T15449","obj":"T15448"},{"id":"R12238","pred":"det","subj":"T15450","obj":"T15451"},{"id":"R12239","pred":"pobj","subj":"T15451","obj":"T15449"},{"id":"R12240","pred":"punct","subj":"T15452","obj":"T15451"},{"id":"R12241","pred":"amod","subj":"T15453","obj":"T15455"},{"id":"R12242","pred":"punct","subj":"T15454","obj":"T15455"},{"id":"R12243","pred":"ROOT","subj":"T15455","obj":"T15455"},{"id":"R12244","pred":"punct","subj":"T15456","obj":"T15455"},{"id":"R12245","pred":"punct","subj":"T15457","obj":"T15455"},{"id":"R12246","pred":"nsubj","subj":"T15458","obj":"T15464"},{"id":"R12247","pred":"prep","subj":"T15459","obj":"T15458"},{"id":"R12248","pred":"det","subj":"T15460","obj":"T15461"},{"id":"R12249","pred":"pobj","subj":"T15461","obj":"T15459"},{"id":"R12250","pred":"acl","subj":"T15462","obj":"T15461"},{"id":"R12251","pred":"nsubj","subj":"T15463","obj":"T15464"},{"id":"R12252","pred":"ROOT","subj":"T15464","obj":"T15464"},{"id":"R12253","pred":"amod","subj":"T15465","obj":"T15467"},{"id":"R12254","pred":"compound","subj":"T15466","obj":"T15467"},{"id":"R12255","pred":"dobj","subj":"T15467","obj":"T15464"},{"id":"R12256","pred":"punct","subj":"T15468","obj":"T15464"},{"id":"R12257","pred":"mark","subj":"T15469","obj":"T15470"},{"id":"R12258","pred":"advcl","subj":"T15470","obj":"T15464"},{"id":"R12259","pred":"prep","subj":"T15471","obj":"T15470"},{"id":"R12260","pred":"det","subj":"T15472","obj":"T15474"},{"id":"R12261","pred":"amod","subj":"T15473","obj":"T15474"},{"id":"R12262","pred":"pobj","subj":"T15474","obj":"T15471"},{"id":"R12263","pred":"punct","subj":"T15475","obj":"T15474"},{"id":"R12264","pred":"appos","subj":"T15476","obj":"T15474"},{"id":"R12265","pred":"punct","subj":"T15477","obj":"T15474"},{"id":"R12266","pred":"aux","subj":"T15478","obj":"T15480"},{"id":"R12267","pred":"neg","subj":"T15479","obj":"T15478"},{"id":"R12268","pred":"punct","subj":"T15480","obj":"T15464"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T15595","span":{"begin":0,"end":12},"obj":"http://purl.obolibrary.org/obo/GO_0009293"},{"id":"T15596","span":{"begin":134,"end":146},"obj":"http://purl.obolibrary.org/obo/GO_0009293"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}

    sentences

    {"project":"sentences","denotations":[{"id":"T15390","span":{"begin":0,"end":183},"obj":"Sentence"},{"id":"T69","span":{"begin":0,"end":183},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T15587","span":{"begin":21,"end":25},"obj":"Q96EP0"},{"id":"T15588","span":{"begin":37,"end":41},"obj":"Q96EP0"},{"id":"T15589","span":{"begin":85,"end":89},"obj":"Q96EP0"},{"id":"T15590","span":{"begin":109,"end":113},"obj":"P33681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}

    test2

    {"project":"test2","denotations":[{"id":"T15364","span":{"begin":21,"end":25},"obj":"Protein"},{"id":"T15365","span":{"begin":26,"end":35},"obj":"Negative_regulation"},{"id":"T15366","span":{"begin":37,"end":41},"obj":"Protein"},{"id":"T15367","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T15368","span":{"begin":99,"end":108},"obj":"Negative_regulation"},{"id":"T15369","span":{"begin":109,"end":113},"obj":"Protein"},{"id":"T15370","span":{"begin":114,"end":126},"obj":"Positive_regulation"}],"relations":[{"id":"R12167","pred":"themeOf","subj":"T15364","obj":"T15365"},{"id":"R12168","pred":"themeOf","subj":"T15369","obj":"T15370"},{"id":"R12169","pred":"themeOf","subj":"T15370","obj":"T15368"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}