PMC:3148254 / 9999-10182
Annnotations
bionlp-st-ge-2016-reference
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bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T15655","span":{"begin":109,"end":113},"obj":"Protein"},{"id":"T15656","span":{"begin":114,"end":126},"obj":"Positive_regulation"},{"id":"T15657","span":{"begin":90,"end":98},"obj":"Negative_regulation"}],"relations":[{"id":"R12395","pred":"themeOf","subj":"T15655","obj":"T15656"},{"id":"R12396","pred":"themeOf","subj":"T15656","obj":"T15657"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}
events-check-again
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pmc-enju-pas
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bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T15448","span":{"begin":0,"end":12},"obj":"NNP"},{"id":"T15449","span":{"begin":13,"end":15},"obj":"IN"},{"id":"T15450","span":{"begin":16,"end":20},"obj":"DT"},{"id":"T15451","span":{"begin":21,"end":35},"obj":"JJ"},{"id":"T15452","span":{"begin":36,"end":37},"obj":"-LRB-"},{"id":"T15453","span":{"begin":37,"end":41},"obj":"SYM"},{"id":"T15454","span":{"begin":41,"end":42},"obj":":"},{"id":"T15455","span":{"begin":42,"end":43},"obj":"SYM"},{"id":"T15456","span":{"begin":43,"end":44},"obj":":"},{"id":"T15457","span":{"begin":44,"end":45},"obj":"-RRB-"},{"id":"T15458","span":{"begin":46,"end":52},"obj":"NNS"},{"id":"T15459","span":{"begin":53,"end":57},"obj":"IN"},{"id":"T15460","span":{"begin":58,"end":59},"obj":"DT"},{"id":"T15461","span":{"begin":60,"end":70},"obj":"NN"},{"id":"T15462","span":{"begin":71,"end":79},"obj":"VBG"},{"id":"T15463","span":{"begin":80,"end":89},"obj":"NNP"},{"id":"T15464","span":{"begin":90,"end":98},"obj":"VBD"},{"id":"T15465","span":{"begin":99,"end":108},"obj":"JJ"},{"id":"T15466","span":{"begin":109,"end":113},"obj":"NNP"},{"id":"T15467","span":{"begin":114,"end":126},"obj":"NN"},{"id":"T15468","span":{"begin":126,"end":127},"obj":","},{"id":"T15469","span":{"begin":128,"end":133},"obj":"IN"},{"id":"T15470","span":{"begin":134,"end":146},"obj":"NN"},{"id":"T15471","span":{"begin":147,"end":151},"obj":"IN"},{"id":"T15472","span":{"begin":152,"end":154},"obj":"DT"},{"id":"T15473","span":{"begin":155,"end":160},"obj":"JJ"},{"id":"T15474","span":{"begin":161,"end":167},"obj":"NN"},{"id":"T15475","span":{"begin":168,"end":169},"obj":"-LRB-"},{"id":"T15476","span":{"begin":169,"end":173},"obj":"NNP"},{"id":"T15477","span":{"begin":173,"end":174},"obj":"-RRB-"},{"id":"T15478","span":{"begin":175,"end":178},"obj":"VBD"},{"id":"T15479","span":{"begin":179,"end":182},"obj":"RB"},{"id":"T15480","span":{"begin":182,"end":183},"obj":"."}],"relations":[{"id":"R12236","pred":"nsubj","subj":"T15448","obj":"T15464"},{"id":"R12237","pred":"prep","subj":"T15449","obj":"T15448"},{"id":"R12238","pred":"det","subj":"T15450","obj":"T15451"},{"id":"R12239","pred":"pobj","subj":"T15451","obj":"T15449"},{"id":"R12240","pred":"punct","subj":"T15452","obj":"T15451"},{"id":"R12241","pred":"amod","subj":"T15453","obj":"T15455"},{"id":"R12242","pred":"punct","subj":"T15454","obj":"T15455"},{"id":"R12243","pred":"ROOT","subj":"T15455","obj":"T15455"},{"id":"R12244","pred":"punct","subj":"T15456","obj":"T15455"},{"id":"R12245","pred":"punct","subj":"T15457","obj":"T15455"},{"id":"R12246","pred":"nsubj","subj":"T15458","obj":"T15464"},{"id":"R12247","pred":"prep","subj":"T15459","obj":"T15458"},{"id":"R12248","pred":"det","subj":"T15460","obj":"T15461"},{"id":"R12249","pred":"pobj","subj":"T15461","obj":"T15459"},{"id":"R12250","pred":"acl","subj":"T15462","obj":"T15461"},{"id":"R12251","pred":"nsubj","subj":"T15463","obj":"T15464"},{"id":"R12252","pred":"ROOT","subj":"T15464","obj":"T15464"},{"id":"R12253","pred":"amod","subj":"T15465","obj":"T15467"},{"id":"R12254","pred":"compound","subj":"T15466","obj":"T15467"},{"id":"R12255","pred":"dobj","subj":"T15467","obj":"T15464"},{"id":"R12256","pred":"punct","subj":"T15468","obj":"T15464"},{"id":"R12257","pred":"mark","subj":"T15469","obj":"T15470"},{"id":"R12258","pred":"advcl","subj":"T15470","obj":"T15464"},{"id":"R12259","pred":"prep","subj":"T15471","obj":"T15470"},{"id":"R12260","pred":"det","subj":"T15472","obj":"T15474"},{"id":"R12261","pred":"amod","subj":"T15473","obj":"T15474"},{"id":"R12262","pred":"pobj","subj":"T15474","obj":"T15471"},{"id":"R12263","pred":"punct","subj":"T15475","obj":"T15474"},{"id":"R12264","pred":"appos","subj":"T15476","obj":"T15474"},{"id":"R12265","pred":"punct","subj":"T15477","obj":"T15474"},{"id":"R12266","pred":"aux","subj":"T15478","obj":"T15480"},{"id":"R12267","pred":"neg","subj":"T15479","obj":"T15478"},{"id":"R12268","pred":"punct","subj":"T15480","obj":"T15464"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T15595","span":{"begin":0,"end":12},"obj":"http://purl.obolibrary.org/obo/GO_0009293"},{"id":"T15596","span":{"begin":134,"end":146},"obj":"http://purl.obolibrary.org/obo/GO_0009293"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}
sentences
{"project":"sentences","denotations":[{"id":"T15390","span":{"begin":0,"end":183},"obj":"Sentence"},{"id":"T69","span":{"begin":0,"end":183},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T15587","span":{"begin":21,"end":25},"obj":"Q96EP0"},{"id":"T15588","span":{"begin":37,"end":41},"obj":"Q96EP0"},{"id":"T15589","span":{"begin":85,"end":89},"obj":"Q96EP0"},{"id":"T15590","span":{"begin":109,"end":113},"obj":"P33681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}
test2
{"project":"test2","denotations":[{"id":"T15364","span":{"begin":21,"end":25},"obj":"Protein"},{"id":"T15365","span":{"begin":26,"end":35},"obj":"Negative_regulation"},{"id":"T15366","span":{"begin":37,"end":41},"obj":"Protein"},{"id":"T15367","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T15368","span":{"begin":99,"end":108},"obj":"Negative_regulation"},{"id":"T15369","span":{"begin":109,"end":113},"obj":"Protein"},{"id":"T15370","span":{"begin":114,"end":126},"obj":"Positive_regulation"}],"relations":[{"id":"R12167","pred":"themeOf","subj":"T15364","obj":"T15365"},{"id":"R12168","pred":"themeOf","subj":"T15369","obj":"T15370"},{"id":"R12169","pred":"themeOf","subj":"T15370","obj":"T15368"}],"text":"Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not."}