PMC:3148254 / 9621-10238 JSONTXT

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    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T15371","span":{"begin":44,"end":48},"obj":"Protein"},{"id":"T15372","span":{"begin":49,"end":57},"obj":"Positive_regulation"},{"id":"T15373","span":{"begin":58,"end":62},"obj":"Protein"},{"id":"T15374","span":{"begin":63,"end":75},"obj":"Positive_regulation"},{"id":"T15375","span":{"begin":79,"end":88},"obj":"Negative_regulation"},{"id":"T15376","span":{"begin":92,"end":96},"obj":"Protein"},{"id":"T15377","span":{"begin":97,"end":106},"obj":"Negative_regulation"},{"id":"T15378","span":{"begin":237,"end":247},"obj":"Gene_expression"},{"id":"T15379","span":{"begin":251,"end":255},"obj":"Protein"},{"id":"T15380","span":{"begin":399,"end":403},"obj":"Protein"},{"id":"T15381","span":{"begin":404,"end":413},"obj":"Negative_regulation"},{"id":"T15382","span":{"begin":415,"end":419},"obj":"Protein"},{"id":"T15383","span":{"begin":463,"end":467},"obj":"Protein"},{"id":"T15384","span":{"begin":468,"end":476},"obj":"Negative_regulation"},{"id":"T15385","span":{"begin":477,"end":486},"obj":"Negative_regulation"},{"id":"T15386","span":{"begin":487,"end":491},"obj":"Protein"},{"id":"T15387","span":{"begin":492,"end":504},"obj":"Positive_regulation"}],"relations":[{"id":"R12170","pred":"causeOf","subj":"T15371","obj":"T15372"},{"id":"R12171","pred":"themeOf","subj":"T15372","obj":"T15375"},{"id":"R12172","pred":"themeOf","subj":"T15373","obj":"T15374"},{"id":"R12173","pred":"themeOf","subj":"T15374","obj":"T15372"},{"id":"R12174","pred":"themeOf","subj":"T15376","obj":"T15377"},{"id":"R12175","pred":"themeOf","subj":"T15379","obj":"T15378"},{"id":"R12176","pred":"themeOf","subj":"T15380","obj":"T15381"},{"id":"R12177","pred":"themeOf","subj":"T15385","obj":"T15384"},{"id":"R12178","pred":"themeOf","subj":"T15386","obj":"T15387"},{"id":"R12179","pred":"themeOf","subj":"T15387","obj":"T15385"}],"attributes":[{"id":"M123","pred":"Speculation","subj":"T15378","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T15644","span":{"begin":44,"end":48},"obj":"Protein"},{"id":"T15645","span":{"begin":58,"end":62},"obj":"Protein"},{"id":"T15646","span":{"begin":63,"end":75},"obj":"Positive_regulation"},{"id":"T15647","span":{"begin":79,"end":88},"obj":"Negative_regulation"},{"id":"T15648","span":{"begin":49,"end":57},"obj":"Positive_regulation"},{"id":"T15649","span":{"begin":154,"end":178},"obj":"Protein"},{"id":"T15650","span":{"begin":194,"end":198},"obj":"Protein"},{"id":"T15651","span":{"begin":251,"end":255},"obj":"Protein"},{"id":"T15652","span":{"begin":301,"end":305},"obj":"Protein"},{"id":"T15653","span":{"begin":351,"end":375},"obj":"Protein"},{"id":"T15654","span":{"begin":237,"end":247},"obj":"Gene_expression"},{"id":"T15655","span":{"begin":487,"end":491},"obj":"Protein"},{"id":"T15656","span":{"begin":492,"end":504},"obj":"Positive_regulation"},{"id":"T15657","span":{"begin":468,"end":476},"obj":"Negative_regulation"}],"relations":[{"id":"R12390","pred":"causeOf","subj":"T15644","obj":"T15648"},{"id":"R12391","pred":"themeOf","subj":"T15645","obj":"T15646"},{"id":"R12392","pred":"themeOf","subj":"T15646","obj":"T15647"},{"id":"R12393","pred":"themeOf","subj":"T15646","obj":"T15648"},{"id":"R12394","pred":"themeOf","subj":"T15651","obj":"T15654"},{"id":"R12395","pred":"themeOf","subj":"T15655","obj":"T15656"},{"id":"R12396","pred":"themeOf","subj":"T15656","obj":"T15657"}],"text":"10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T15658","span":{"begin":44,"end":48},"obj":"Protein"},{"id":"T15659","span":{"begin":49,"end":57},"obj":"Positive_regulation"},{"id":"T15660","span":{"begin":58,"end":62},"obj":"Protein"},{"id":"T15661","span":{"begin":63,"end":75},"obj":"Positive_regulation"},{"id":"T15662","span":{"begin":79,"end":88},"obj":"Negative_regulation"},{"id":"T15663","span":{"begin":92,"end":96},"obj":"Protein"},{"id":"T15664","span":{"begin":97,"end":106},"obj":"Negative_regulation"},{"id":"T15665","span":{"begin":237,"end":247},"obj":"Gene_expression"},{"id":"T15666","span":{"begin":251,"end":255},"obj":"Protein"},{"id":"T15667","span":{"begin":399,"end":403},"obj":"Protein"},{"id":"T15668","span":{"begin":404,"end":413},"obj":"Negative_regulation"},{"id":"T15669","span":{"begin":415,"end":419},"obj":"Protein"},{"id":"T15670","span":{"begin":463,"end":467},"obj":"Protein"},{"id":"T15671","span":{"begin":468,"end":476},"obj":"Negative_regulation"},{"id":"T15672","span":{"begin":477,"end":486},"obj":"Negative_regulation"},{"id":"T15673","span":{"begin":487,"end":491},"obj":"Protein"},{"id":"T15674","span":{"begin":492,"end":504},"obj":"Positive_regulation"}],"relations":[{"id":"R12397","pred":"causeOf","subj":"T15658","obj":"T15659"},{"id":"R12398","pred":"themeOf","subj":"T15659","obj":"T15662"},{"id":"R12399","pred":"themeOf","subj":"T15660","obj":"T15661"},{"id":"R12400","pred":"themeOf","subj":"T15661","obj":"T15659"},{"id":"R12401","pred":"themeOf","subj":"T15663","obj":"T15664"},{"id":"R12402","pred":"themeOf","subj":"T15666","obj":"T15665"},{"id":"R12403","pred":"themeOf","subj":"T15667","obj":"T15668"},{"id":"R12404","pred":"themeOf","subj":"T15672","obj":"T15671"},{"id":"R12405","pred":"themeOf","subj":"T15673","obj":"T15674"},{"id":"R12406","pred":"themeOf","subj":"T15674","obj":"T15672"}],"attributes":[{"id":"M126","pred":"Speculation","subj":"T15665","obj":"true"}],"text":"10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    pmc-enju-pas

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Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    bionlp-st-ge-2016-spacy-parsed

    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Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T15595","span":{"begin":378,"end":390},"obj":"http://purl.obolibrary.org/obo/GO_0009293"},{"id":"T15596","span":{"begin":512,"end":524},"obj":"http://purl.obolibrary.org/obo/GO_0009293"}],"text":"10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T15597","span":{"begin":170,"end":178},"obj":"http://purl.obolibrary.org/obo/GO_0003823"},{"id":"T15598","span":{"begin":199,"end":207},"obj":"http://purl.obolibrary.org/obo/GO_0003823"},{"id":"T15599","span":{"begin":306,"end":314},"obj":"http://purl.obolibrary.org/obo/GO_0003823"},{"id":"T15600","span":{"begin":367,"end":375},"obj":"http://purl.obolibrary.org/obo/GO_0003823"}],"text":"10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T15601","span":{"begin":107,"end":112},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T15602","span":{"begin":170,"end":178},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T15603","span":{"begin":199,"end":207},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T15604","span":{"begin":306,"end":314},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T15605","span":{"begin":367,"end":375},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T15606","span":{"begin":170,"end":178},"obj":"http://purl.obolibrary.org/obo/GO_0042571"},{"id":"T15607","span":{"begin":199,"end":207},"obj":"http://purl.obolibrary.org/obo/GO_0042571"},{"id":"T15608","span":{"begin":306,"end":314},"obj":"http://purl.obolibrary.org/obo/GO_0042571"},{"id":"T15609","span":{"begin":367,"end":375},"obj":"http://purl.obolibrary.org/obo/GO_0042571"}],"text":"10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    sentences

    {"project":"sentences","denotations":[{"id":"T15388","span":{"begin":44,"end":113},"obj":"Sentence"},{"id":"T15389","span":{"begin":114,"end":377},"obj":"Sentence"},{"id":"T15390","span":{"begin":378,"end":561},"obj":"Sentence"},{"id":"T15391","span":{"begin":562,"end":615},"obj":"Sentence"},{"id":"T67","span":{"begin":0,"end":113},"obj":"Sentence"},{"id":"T68","span":{"begin":114,"end":377},"obj":"Sentence"},{"id":"T69","span":{"begin":378,"end":561},"obj":"Sentence"},{"id":"T70","span":{"begin":562,"end":615},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T15581","span":{"begin":44,"end":48},"obj":"P25942"},{"id":"T15582","span":{"begin":58,"end":62},"obj":"P33681"},{"id":"T15583","span":{"begin":92,"end":96},"obj":"Q96EP0"},{"id":"T15584","span":{"begin":194,"end":198},"obj":"P25942"},{"id":"T15585","span":{"begin":251,"end":255},"obj":"P33681"},{"id":"T15586","span":{"begin":301,"end":305},"obj":"P33681"},{"id":"T15587","span":{"begin":399,"end":403},"obj":"Q96EP0"},{"id":"T15588","span":{"begin":415,"end":419},"obj":"Q96EP0"},{"id":"T15589","span":{"begin":463,"end":467},"obj":"Q96EP0"},{"id":"T15590","span":{"begin":487,"end":491},"obj":"P33681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}

    test2

    {"project":"test2","denotations":[{"id":"T15355","span":{"begin":44,"end":48},"obj":"Protein"},{"id":"T15356","span":{"begin":49,"end":57},"obj":"Positive_regulation"},{"id":"T15357","span":{"begin":58,"end":62},"obj":"Protein"},{"id":"T15358","span":{"begin":63,"end":75},"obj":"Positive_regulation"},{"id":"T15359","span":{"begin":79,"end":88},"obj":"Negative_regulation"},{"id":"T15360","span":{"begin":92,"end":96},"obj":"Protein"},{"id":"T15361","span":{"begin":97,"end":106},"obj":"Negative_regulation"},{"id":"T15362","span":{"begin":237,"end":247},"obj":"Gene_expression"},{"id":"T15363","span":{"begin":251,"end":255},"obj":"Protein"},{"id":"T15364","span":{"begin":399,"end":403},"obj":"Protein"},{"id":"T15365","span":{"begin":404,"end":413},"obj":"Negative_regulation"},{"id":"T15366","span":{"begin":415,"end":419},"obj":"Protein"},{"id":"T15367","span":{"begin":463,"end":467},"obj":"Protein"},{"id":"T15368","span":{"begin":477,"end":486},"obj":"Negative_regulation"},{"id":"T15369","span":{"begin":487,"end":491},"obj":"Protein"},{"id":"T15370","span":{"begin":492,"end":504},"obj":"Positive_regulation"}],"relations":[{"id":"R12159","pred":"causeOf","subj":"T15355","obj":"T15356"},{"id":"R12160","pred":"themeOf","subj":"T15356","obj":"T15359"},{"id":"R12161","pred":"themeOf","subj":"T15357","obj":"T15358"},{"id":"R12162","pred":"themeOf","subj":"T15358","obj":"T15356"},{"id":"R12163","pred":"themeOf","subj":"T15358","obj":"T15359"},{"id":"R12164","pred":"themeOf","subj":"T15360","obj":"T15361"},{"id":"R12165","pred":"causeOf","subj":"T15361","obj":"T15359"},{"id":"R12166","pred":"themeOf","subj":"T15363","obj":"T15362"},{"id":"R12167","pred":"themeOf","subj":"T15364","obj":"T15365"},{"id":"R12168","pred":"themeOf","subj":"T15369","obj":"T15370"},{"id":"R12169","pred":"themeOf","subj":"T15370","obj":"T15368"}],"attributes":[{"id":"M122","pred":"Speculation","subj":"T15359","obj":"true"}],"text":"10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.\nCells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. Similar results were obtained in a second experiment. "}