PMC:3148254 / 9621-10238
Annnotations
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue | Speculation |
|---|---|---|---|---|---|
| T15371 | 44-48 | Protein | denotes | CD40 | |
| T15372 | 49-57 | Positive_regulation | denotes | mediated | |
| T15373 | 58-62 | Protein | denotes | CD80 | |
| T15374 | 63-75 | Positive_regulation | denotes | upregulation | |
| T15375 | 79-88 | Negative_regulation | denotes | defective | |
| T15376 | 92-96 | Protein | denotes | HOIP | |
| T15377 | 97-106 | Negative_regulation | denotes | deficient | |
| T15378 | 237-247 | Gene_expression | denotes | expression | true |
| T15379 | 251-255 | Protein | denotes | CD80 | |
| T15380 | 399-403 | Protein | denotes | HOIP | |
| T15381 | 404-413 | Negative_regulation | denotes | deficient | |
| T15382 | 415-419 | Protein | denotes | HOIP | |
| T15383 | 463-467 | Protein | denotes | HOIP | |
| T15384 | 468-476 | Negative_regulation | denotes | reversed | |
| T15385 | 477-486 | Negative_regulation | denotes | defective | |
| T15386 | 487-491 | Protein | denotes | CD80 | |
| T15387 | 492-504 | Positive_regulation | denotes | upregulation | |
| R12170 | T15371 | T15372 | causeOf | CD40,mediated | |
| R12171 | T15372 | T15375 | themeOf | mediated,defective | |
| R12172 | T15373 | T15374 | themeOf | CD80,upregulation | |
| R12173 | T15374 | T15372 | themeOf | upregulation,mediated | |
| R12174 | T15376 | T15377 | themeOf | HOIP,deficient | |
| R12175 | T15379 | T15378 | themeOf | CD80,expression | |
| R12176 | T15380 | T15381 | themeOf | HOIP,deficient | |
| R12177 | T15385 | T15384 | themeOf | defective,reversed | |
| R12178 | T15386 | T15387 | themeOf | CD80,upregulation | |
| R12179 | T15387 | T15385 | themeOf | upregulation,defective |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15644 | 44-48 | Protein | denotes | CD40 |
| T15645 | 58-62 | Protein | denotes | CD80 |
| T15646 | 63-75 | Positive_regulation | denotes | upregulation |
| T15647 | 79-88 | Negative_regulation | denotes | defective |
| T15648 | 49-57 | Positive_regulation | denotes | mediated |
| T15649 | 154-178 | Protein | denotes | isotype control antibody |
| T15650 | 194-198 | Protein | denotes | CD40 |
| T15651 | 251-255 | Protein | denotes | CD80 |
| T15652 | 301-305 | Protein | denotes | CD80 |
| T15653 | 351-375 | Protein | denotes | isotype control antibody |
| T15654 | 237-247 | Gene_expression | denotes | expression |
| T15655 | 487-491 | Protein | denotes | CD80 |
| T15656 | 492-504 | Positive_regulation | denotes | upregulation |
| T15657 | 468-476 | Negative_regulation | denotes | reversed |
| R12390 | T15644 | T15648 | causeOf | CD40,mediated |
| R12391 | T15645 | T15646 | themeOf | CD80,upregulation |
| R12392 | T15646 | T15647 | themeOf | upregulation,defective |
| R12393 | T15646 | T15648 | themeOf | upregulation,mediated |
| R12394 | T15651 | T15654 | themeOf | CD80,expression |
| R12395 | T15655 | T15656 | themeOf | CD80,upregulation |
| R12396 | T15656 | T15657 | themeOf | upregulation,reversed |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue | Speculation |
|---|---|---|---|---|---|
| T15658 | 44-48 | Protein | denotes | CD40 | |
| T15659 | 49-57 | Positive_regulation | denotes | mediated | |
| T15660 | 58-62 | Protein | denotes | CD80 | |
| T15661 | 63-75 | Positive_regulation | denotes | upregulation | |
| T15662 | 79-88 | Negative_regulation | denotes | defective | |
| T15663 | 92-96 | Protein | denotes | HOIP | |
| T15664 | 97-106 | Negative_regulation | denotes | deficient | |
| T15665 | 237-247 | Gene_expression | denotes | expression | true |
| T15666 | 251-255 | Protein | denotes | CD80 | |
| T15667 | 399-403 | Protein | denotes | HOIP | |
| T15668 | 404-413 | Negative_regulation | denotes | deficient | |
| T15669 | 415-419 | Protein | denotes | HOIP | |
| T15670 | 463-467 | Protein | denotes | HOIP | |
| T15671 | 468-476 | Negative_regulation | denotes | reversed | |
| T15672 | 477-486 | Negative_regulation | denotes | defective | |
| T15673 | 487-491 | Protein | denotes | CD80 | |
| T15674 | 492-504 | Positive_regulation | denotes | upregulation | |
| R12397 | T15658 | T15659 | causeOf | CD40,mediated | |
| R12398 | T15659 | T15662 | themeOf | mediated,defective | |
| R12399 | T15660 | T15661 | themeOf | CD80,upregulation | |
| R12400 | T15661 | T15659 | themeOf | upregulation,mediated | |
| R12401 | T15663 | T15664 | themeOf | HOIP,deficient | |
| R12402 | T15666 | T15665 | themeOf | CD80,expression | |
| R12403 | T15667 | T15668 | themeOf | HOIP,deficient | |
| R12404 | T15672 | T15671 | themeOf | defective,reversed | |
| R12405 | T15673 | T15674 | themeOf | CD80,upregulation | |
| R12406 | T15674 | T15672 | themeOf | upregulation,defective |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15490 | 44-57 | JJ | denotes | CD40-mediated |
| T15491 | 58-62 | NN | denotes | CD80 |
| T15492 | 63-75 | NN | denotes | upregulation |
| T15493 | 76-78 | VB | denotes | is |
| T15494 | 79-88 | JJ | denotes | defective |
| T15495 | 89-91 | IN | denotes | in |
| T15496 | 92-106 | JJ | denotes | HOIP-deficient |
| T15497 | 107-112 | NN | denotes | cells |
| T15498 | 114-119 | NN | denotes | Cells |
| T15499 | 120-124 | VB | denotes | were |
| T15500 | 125-134 | VB | denotes | incubated |
| T15501 | 135-138 | IN | denotes | for |
| T15502 | 139-141 | CD | denotes | 72 |
| T15503 | 142-145 | NN | denotes | hrs |
| T15504 | 146-150 | IN | denotes | with |
| T15505 | 151-153 | DT | denotes | an |
| T15506 | 154-161 | NN | denotes | isotype |
| T15507 | 162-169 | NN | denotes | control |
| T15508 | 170-178 | NN | denotes | antibody |
| T15509 | 179-180 | -LRB- | denotes | ( |
| T15510 | 180-184 | JJ | denotes | left |
| T15511 | 184-185 | -RRB- | denotes | ) |
| T15512 | 186-188 | CC | denotes | or |
| T15513 | 189-198 | JJ | denotes | anti-CD40 |
| T15514 | 199-207 | NN | denotes | antibody |
| T15515 | 208-209 | -LRB- | denotes | ( |
| T15516 | 209-214 | NN | denotes | right |
| T15517 | 214-215 | -RRB- | denotes | ) |
| T15518 | 216-219 | CC | denotes | and |
| T15519 | 220-224 | RB | denotes | then |
| T15520 | 225-232 | VB | denotes | stained |
| T15521 | 233-236 | IN | denotes | for |
| T15522 | 237-247 | NN | denotes | expression |
| T15523 | 248-250 | IN | denotes | of |
| T15524 | 251-255 | NN | denotes | CD80 |
| T15525 | 256-257 | -LRB- | denotes | ( |
| T15526 | 257-263 | VB | denotes | filled |
| T15527 | 264-272 | NN | denotes | profiles |
| T15528 | 273-281 | VB | denotes | indicate |
| T15529 | 282-290 | NN | denotes | staining |
| T15530 | 291-295 | IN | denotes | with |
| T15531 | 296-305 | JJ | denotes | anti-CD80 |
| T15532 | 306-314 | NN | denotes | antibody |
| T15533 | 314-315 | -COLON- | denotes | ; |
| T15534 | 316-320 | JJ | denotes | open |
| T15535 | 321-329 | NN | denotes | profiles |
| T15536 | 330-333 | VB | denotes | are |
| T15537 | 334-342 | VB | denotes | staining |
| T15538 | 343-347 | IN | denotes | with |
| T15539 | 348-350 | DT | denotes | an |
| T15540 | 351-358 | NN | denotes | isotype |
| T15541 | 359-366 | NN | denotes | control |
| T15542 | 367-375 | NN | denotes | antibody |
| T15543 | 375-376 | -RRB- | denotes | ) |
| T15544 | 378-390 | NN | denotes | Transduction |
| T15545 | 391-393 | IN | denotes | of |
| T15546 | 394-398 | CC | denotes | both |
| T15547 | 399-413 | JJ | denotes | HOIP-deficient |
| T15548 | 414-415 | -LRB- | denotes | ( |
| T15549 | 415-422 | JJ | denotes | HOIP-/- |
| T15550 | 422-423 | -RRB- | denotes | ) |
| T15551 | 424-430 | NN | denotes | clones |
| T15552 | 431-435 | IN | denotes | with |
| T15553 | 436-437 | DT | denotes | a |
| T15554 | 438-448 | NN | denotes | retrovirus |
| T15555 | 449-457 | VB | denotes | encoding |
| T15556 | 458-467 | NN | denotes | FLAG-HOIP |
| T15557 | 468-476 | VB | denotes | reversed |
| T15558 | 477-486 | JJ | denotes | defective |
| T15559 | 487-491 | NN | denotes | CD80 |
| T15560 | 492-504 | NN | denotes | upregulation |
| T15561 | 504-505 | -COMMA- | denotes | , |
| T15562 | 506-511 | IN | denotes | while |
| T15563 | 512-524 | NN | denotes | transduction |
| T15564 | 525-529 | IN | denotes | with |
| T15565 | 530-532 | DT | denotes | an |
| T15566 | 533-538 | JJ | denotes | empty |
| T15567 | 539-545 | NN | denotes | vector |
| T15568 | 546-547 | -LRB- | denotes | ( |
| T15569 | 547-551 | NN | denotes | pMIP |
| T15570 | 551-552 | -RRB- | denotes | ) |
| T15571 | 553-556 | VB | denotes | did |
| T15572 | 557-560 | RB | denotes | not |
| T15573 | 562-569 | JJ | denotes | Similar |
| T15574 | 570-577 | NN | denotes | results |
| T15575 | 578-582 | VB | denotes | were |
| T15576 | 583-591 | VB | denotes | obtained |
| T15577 | 592-594 | IN | denotes | in |
| T15578 | 595-596 | DT | denotes | a |
| T15579 | 597-603 | JJ | denotes | second |
| T15580 | 604-614 | NN | denotes | experiment |
| R12278 | T15492 | T15490 | arg1Of | upregulation,CD40-mediated |
| R12279 | T15492 | T15491 | arg1Of | upregulation,CD80 |
| R12280 | T15492 | T15493 | arg1Of | upregulation,is |
| R12281 | T15492 | T15494 | arg1Of | upregulation,defective |
| R12282 | T15493 | T15495 | arg1Of | is,in |
| R12283 | T15494 | T15493 | arg2Of | defective,is |
| R12284 | T15497 | T15495 | arg2Of | cells,in |
| R12285 | T15497 | T15496 | arg1Of | cells,HOIP-deficient |
| R12286 | T15498 | T15499 | arg1Of | Cells,were |
| R12287 | T15498 | T15500 | arg2Of | Cells,incubated |
| R12288 | T15498 | T15520 | arg2Of | Cells,stained |
| R12289 | T15500 | T15501 | arg1Of | incubated,for |
| R12290 | T15500 | T15518 | arg1Of | incubated,and |
| R12291 | T15503 | T15501 | arg2Of | hrs,for |
| R12292 | T15503 | T15502 | arg1Of | hrs,72 |
| R12293 | T15503 | T15504 | arg1Of | hrs,with |
| R12294 | T15508 | T15506 | arg1Of | antibody,isotype |
| R12295 | T15508 | T15507 | arg1Of | antibody,control |
| R12296 | T15508 | T15509 | arg1Of | antibody,( |
| R12297 | T15508 | T15512 | arg1Of | antibody,or |
| R12298 | T15510 | T15509 | arg2Of | left,( |
| R12299 | T15511 | T15509 | arg3Of | ),( |
| R12300 | T15512 | T15504 | arg2Of | or,with |
| R12301 | T15512 | T15505 | arg1Of | or,an |
| R12302 | T15514 | T15512 | arg2Of | antibody,or |
| R12303 | T15514 | T15513 | arg1Of | antibody,anti-CD40 |
| R12304 | T15514 | T15515 | arg1Of | antibody,( |
| R12305 | T15516 | T15515 | arg2Of | right,( |
| R12306 | T15517 | T15515 | arg3Of | ),( |
| R12307 | T15518 | T15499 | arg2Of | and,were |
| R12308 | T15520 | T15518 | arg2Of | stained,and |
| R12309 | T15520 | T15519 | arg1Of | stained,then |
| R12310 | T15520 | T15521 | arg1Of | stained,for |
| R12311 | T15522 | T15521 | arg2Of | expression,for |
| R12312 | T15522 | T15523 | arg1Of | expression,of |
| R12313 | T15524 | T15523 | arg2Of | CD80,of |
| R12314 | T15524 | T15525 | arg1Of | CD80,( |
| R12315 | T15527 | T15526 | arg2Of | profiles,filled |
| R12316 | T15527 | T15528 | arg1Of | profiles,indicate |
| R12317 | T15528 | T15525 | arg2Of | indicate,( |
| R12318 | T15528 | T15530 | arg1Of | indicate,with |
| R12319 | T15528 | T15533 | arg1Of | indicate,; |
| R12320 | T15529 | T15528 | arg2Of | staining,indicate |
| R12321 | T15532 | T15530 | arg2Of | antibody,with |
| R12322 | T15532 | T15531 | arg1Of | antibody,anti-CD80 |
| R12323 | T15535 | T15534 | arg1Of | profiles,open |
| R12324 | T15535 | T15536 | arg1Of | profiles,are |
| R12325 | T15535 | T15537 | arg1Of | profiles,staining |
| R12326 | T15537 | T15533 | arg2Of | staining,; |
| R12327 | T15537 | T15536 | arg2Of | staining,are |
| R12328 | T15537 | T15538 | arg1Of | staining,with |
| R12329 | T15542 | T15538 | arg2Of | antibody,with |
| R12330 | T15542 | T15539 | arg1Of | antibody,an |
| R12331 | T15542 | T15540 | arg1Of | antibody,isotype |
| R12332 | T15542 | T15541 | arg1Of | antibody,control |
| R12333 | T15543 | T15525 | arg3Of | ),( |
| R12334 | T15544 | T15545 | arg1Of | Transduction,of |
| R12335 | T15544 | T15557 | arg1Of | Transduction,reversed |
| R12336 | T15547 | T15548 | arg1Of | HOIP-deficient,( |
| R12337 | T15549 | T15548 | arg2Of | HOIP-/-,( |
| R12338 | T15550 | T15548 | arg3Of | ),( |
| R12339 | T15551 | T15545 | arg2Of | clones,of |
| R12340 | T15551 | T15546 | arg1Of | clones,both |
| R12341 | T15551 | T15547 | arg1Of | clones,HOIP-deficient |
| R12342 | T15551 | T15552 | arg1Of | clones,with |
| R12343 | T15554 | T15552 | arg2Of | retrovirus,with |
| R12344 | T15554 | T15553 | arg1Of | retrovirus,a |
| R12345 | T15554 | T15555 | arg1Of | retrovirus,encoding |
| R12346 | T15556 | T15555 | arg2Of | FLAG-HOIP,encoding |
| R12347 | T15557 | T15561 | arg1Of | reversed,"," |
| R12348 | T15557 | T15562 | arg1Of | reversed,while |
| R12349 | T15560 | T15557 | arg2Of | upregulation,reversed |
| R12350 | T15560 | T15558 | arg1Of | upregulation,defective |
| R12351 | T15560 | T15559 | arg1Of | upregulation,CD80 |
| R12352 | T15563 | T15564 | arg1Of | transduction,with |
| R12353 | T15563 | T15571 | arg1Of | transduction,did |
| R12354 | T15567 | T15564 | arg2Of | vector,with |
| R12355 | T15567 | T15565 | arg1Of | vector,an |
| R12356 | T15567 | T15566 | arg1Of | vector,empty |
| R12357 | T15567 | T15568 | arg1Of | vector,( |
| R12358 | T15569 | T15568 | arg2Of | pMIP,( |
| R12359 | T15570 | T15568 | arg3Of | ),( |
| R12360 | T15571 | T15562 | arg2Of | did,while |
| R12361 | T15571 | T15572 | arg1Of | did,not |
| R12362 | T15574 | T15573 | arg1Of | results,Similar |
| R12363 | T15574 | T15575 | arg1Of | results,were |
| R12364 | T15574 | T15576 | arg2Of | results,obtained |
| R12365 | T15576 | T15575 | arg2Of | obtained,were |
| R12366 | T15576 | T15577 | arg1Of | obtained,in |
| R12367 | T15580 | T15577 | arg2Of | experiment,in |
| R12368 | T15580 | T15578 | arg1Of | experiment,a |
| R12369 | T15580 | T15579 | arg1Of | experiment,second |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15392 | 44-57 | JJ | denotes | CD40-mediated |
| T15393 | 58-62 | NN | denotes | CD80 |
| T15394 | 63-75 | NN | denotes | upregulation |
| T15395 | 76-78 | VBZ | denotes | is |
| T15396 | 79-88 | JJ | denotes | defective |
| T15397 | 89-91 | IN | denotes | in |
| T15398 | 92-106 | JJ | denotes | HOIP-deficient |
| T15399 | 107-112 | NNS | denotes | cells |
| T15400 | 112-113 | . | denotes | . |
| T15401 | 114-119 | NNS | denotes | Cells |
| T15402 | 120-124 | VBD | denotes | were |
| T15403 | 125-134 | VBN | denotes | incubated |
| T15404 | 135-138 | IN | denotes | for |
| T15405 | 139-141 | CD | denotes | 72 |
| T15406 | 142-145 | NNS | denotes | hrs |
| T15407 | 146-150 | IN | denotes | with |
| T15408 | 151-153 | DT | denotes | an |
| T15409 | 154-161 | NN | denotes | isotype |
| T15410 | 162-169 | NN | denotes | control |
| T15411 | 170-178 | NN | denotes | antibody |
| T15412 | 179-180 | -LRB- | denotes | ( |
| T15413 | 180-184 | VBN | denotes | left |
| T15414 | 184-185 | -RRB- | denotes | ) |
| T15415 | 186-188 | CC | denotes | or |
| T15416 | 189-198 | JJ | denotes | anti-CD40 |
| T15417 | 199-207 | NN | denotes | antibody |
| T15418 | 208-209 | -LRB- | denotes | ( |
| T15419 | 209-214 | NN | denotes | right |
| T15420 | 214-215 | -RRB- | denotes | ) |
| T15421 | 216-219 | CC | denotes | and |
| T15422 | 220-224 | RB | denotes | then |
| T15423 | 225-232 | VBD | denotes | stained |
| T15424 | 233-236 | IN | denotes | for |
| T15425 | 237-247 | NN | denotes | expression |
| T15426 | 248-250 | IN | denotes | of |
| T15427 | 251-255 | NNP | denotes | CD80 |
| T15428 | 256-257 | -LRB- | denotes | ( |
| T15429 | 257-263 | VBN | denotes | filled |
| T15430 | 264-272 | NNS | denotes | profiles |
| T15431 | 273-281 | VBP | denotes | indicate |
| T15432 | 282-290 | VBG | denotes | staining |
| T15433 | 291-295 | IN | denotes | with |
| T15434 | 296-305 | JJ | denotes | anti-CD80 |
| T15435 | 306-314 | NN | denotes | antibody |
| T15436 | 314-315 | : | denotes | ; |
| T15437 | 316-320 | JJ | denotes | open |
| T15438 | 321-329 | NNS | denotes | profiles |
| T15439 | 330-333 | VBP | denotes | are |
| T15440 | 334-342 | VBG | denotes | staining |
| T15441 | 343-347 | IN | denotes | with |
| T15442 | 348-350 | DT | denotes | an |
| T15443 | 351-358 | NN | denotes | isotype |
| T15444 | 359-366 | NN | denotes | control |
| T15445 | 367-375 | NN | denotes | antibody |
| T15446 | 375-376 | -RRB- | denotes | ) |
| T15447 | 376-377 | . | denotes | . |
| T15448 | 378-390 | NNP | denotes | Transduction |
| T15449 | 391-393 | IN | denotes | of |
| T15450 | 394-398 | DT | denotes | both |
| T15451 | 399-413 | JJ | denotes | HOIP-deficient |
| T15452 | 414-415 | -LRB- | denotes | ( |
| T15453 | 415-419 | SYM | denotes | HOIP |
| T15454 | 419-420 | : | denotes | - |
| T15455 | 420-421 | SYM | denotes | / |
| T15456 | 421-422 | : | denotes | - |
| T15457 | 422-423 | -RRB- | denotes | ) |
| T15458 | 424-430 | NNS | denotes | clones |
| T15459 | 431-435 | IN | denotes | with |
| T15460 | 436-437 | DT | denotes | a |
| T15461 | 438-448 | NN | denotes | retrovirus |
| T15462 | 449-457 | VBG | denotes | encoding |
| T15463 | 458-467 | NNP | denotes | FLAG-HOIP |
| T15464 | 468-476 | VBD | denotes | reversed |
| T15465 | 477-486 | JJ | denotes | defective |
| T15466 | 487-491 | NNP | denotes | CD80 |
| T15467 | 492-504 | NN | denotes | upregulation |
| T15468 | 504-505 | , | denotes | , |
| T15469 | 506-511 | IN | denotes | while |
| T15470 | 512-524 | NN | denotes | transduction |
| T15471 | 525-529 | IN | denotes | with |
| T15472 | 530-532 | DT | denotes | an |
| T15473 | 533-538 | JJ | denotes | empty |
| T15474 | 539-545 | NN | denotes | vector |
| T15475 | 546-547 | -LRB- | denotes | ( |
| T15476 | 547-551 | NNP | denotes | pMIP |
| T15477 | 551-552 | -RRB- | denotes | ) |
| T15478 | 553-556 | VBD | denotes | did |
| T15479 | 557-560 | RB | denotes | not |
| T15480 | 560-561 | . | denotes | . |
| T15481 | 562-569 | JJ | denotes | Similar |
| T15482 | 570-577 | NNS | denotes | results |
| T15483 | 578-582 | VBD | denotes | were |
| T15484 | 583-591 | VBN | denotes | obtained |
| T15485 | 592-594 | IN | denotes | in |
| T15486 | 595-596 | DT | denotes | a |
| T15487 | 597-603 | JJ | denotes | second |
| T15488 | 604-614 | NN | denotes | experiment |
| T15489 | 614-615 | . | denotes | . |
| R12180 | T15392 | T15394 | amod | CD40-mediated,upregulation |
| R12181 | T15393 | T15394 | compound | CD80,upregulation |
| R12182 | T15394 | T15395 | nsubj | upregulation,is |
| R12183 | T15395 | T15395 | ROOT | is,is |
| R12184 | T15396 | T15395 | acomp | defective,is |
| R12185 | T15397 | T15396 | prep | in,defective |
| R12186 | T15398 | T15399 | amod | HOIP-deficient,cells |
| R12187 | T15399 | T15397 | pobj | cells,in |
| R12188 | T15400 | T15395 | punct | .,is |
| R12189 | T15401 | T15403 | nsubjpass | Cells,incubated |
| R12190 | T15402 | T15403 | auxpass | were,incubated |
| R12191 | T15403 | T15403 | ROOT | incubated,incubated |
| R12192 | T15404 | T15403 | prep | for,incubated |
| R12193 | T15405 | T15406 | nummod | 72,hrs |
| R12194 | T15406 | T15404 | pobj | hrs,for |
| R12195 | T15407 | T15403 | prep | with,incubated |
| R12196 | T15408 | T15411 | det | an,antibody |
| R12197 | T15409 | T15410 | amod | isotype,control |
| R12198 | T15410 | T15411 | compound | control,antibody |
| R12199 | T15411 | T15407 | pobj | antibody,with |
| R12200 | T15412 | T15413 | punct | (,left |
| R12201 | T15413 | T15403 | advcl | left,incubated |
| R12202 | T15414 | T15413 | punct | ),left |
| R12203 | T15415 | T15413 | cc | or,left |
| R12204 | T15416 | T15417 | amod | anti-CD40,antibody |
| R12205 | T15417 | T15403 | conj | antibody,incubated |
| R12206 | T15418 | T15419 | punct | (,right |
| R12207 | T15419 | T15417 | parataxis | right,antibody |
| R12208 | T15420 | T15419 | punct | ),right |
| R12209 | T15421 | T15403 | cc | and,incubated |
| R12210 | T15422 | T15423 | advmod | then,stained |
| R12211 | T15423 | T15403 | conj | stained,incubated |
| R12212 | T15424 | T15423 | prep | for,stained |
| R12213 | T15425 | T15424 | pobj | expression,for |
| R12214 | T15426 | T15425 | prep | of,expression |
| R12215 | T15427 | T15426 | pobj | CD80,of |
| R12216 | T15428 | T15429 | punct | (,filled |
| R12217 | T15429 | T15430 | amod | filled,profiles |
| R12218 | T15430 | T15431 | nsubj | profiles,indicate |
| R12219 | T15431 | T15423 | ccomp | indicate,stained |
| R12220 | T15432 | T15431 | ccomp | staining,indicate |
| R12221 | T15433 | T15432 | prep | with,staining |
| R12222 | T15434 | T15435 | amod | anti-CD80,antibody |
| R12223 | T15435 | T15433 | pobj | antibody,with |
| R12224 | T15436 | T15431 | punct | ;,indicate |
| R12225 | T15437 | T15438 | amod | open,profiles |
| R12226 | T15438 | T15440 | nsubj | profiles,staining |
| R12227 | T15439 | T15440 | aux | are,staining |
| R12228 | T15440 | T15403 | conj | staining,incubated |
| R12229 | T15441 | T15440 | prep | with,staining |
| R12230 | T15442 | T15445 | det | an,antibody |
| R12231 | T15443 | T15444 | amod | isotype,control |
| R12232 | T15444 | T15445 | compound | control,antibody |
| R12233 | T15445 | T15441 | pobj | antibody,with |
| R12234 | T15446 | T15440 | punct | ),staining |
| R12235 | T15447 | T15440 | punct | .,staining |
| R12236 | T15448 | T15464 | nsubj | Transduction,reversed |
| R12237 | T15449 | T15448 | prep | of,Transduction |
| R12238 | T15450 | T15451 | det | both,HOIP-deficient |
| R12239 | T15451 | T15449 | pobj | HOIP-deficient,of |
| R12240 | T15452 | T15451 | punct | (,HOIP-deficient |
| R12241 | T15453 | T15455 | amod | HOIP,/ |
| R12242 | T15454 | T15455 | punct | -,/ |
| R12243 | T15455 | T15455 | ROOT | /,/ |
| R12244 | T15456 | T15455 | punct | -,/ |
| R12245 | T15457 | T15455 | punct | ),/ |
| R12246 | T15458 | T15464 | nsubj | clones,reversed |
| R12247 | T15459 | T15458 | prep | with,clones |
| R12248 | T15460 | T15461 | det | a,retrovirus |
| R12249 | T15461 | T15459 | pobj | retrovirus,with |
| R12250 | T15462 | T15461 | acl | encoding,retrovirus |
| R12251 | T15463 | T15464 | nsubj | FLAG-HOIP,reversed |
| R12252 | T15464 | T15464 | ROOT | reversed,reversed |
| R12253 | T15465 | T15467 | amod | defective,upregulation |
| R12254 | T15466 | T15467 | compound | CD80,upregulation |
| R12255 | T15467 | T15464 | dobj | upregulation,reversed |
| R12256 | T15468 | T15464 | punct | ",",reversed |
| R12257 | T15469 | T15470 | mark | while,transduction |
| R12258 | T15470 | T15464 | advcl | transduction,reversed |
| R12259 | T15471 | T15470 | prep | with,transduction |
| R12260 | T15472 | T15474 | det | an,vector |
| R12261 | T15473 | T15474 | amod | empty,vector |
| R12262 | T15474 | T15471 | pobj | vector,with |
| R12263 | T15475 | T15474 | punct | (,vector |
| R12264 | T15476 | T15474 | appos | pMIP,vector |
| R12265 | T15477 | T15474 | punct | ),vector |
| R12266 | T15478 | T15480 | aux | did,. |
| R12267 | T15479 | T15478 | neg | not,did |
| R12268 | T15480 | T15464 | punct | .,reversed |
| R12269 | T15481 | T15482 | amod | Similar,results |
| R12270 | T15482 | T15484 | nsubjpass | results,obtained |
| R12271 | T15483 | T15484 | auxpass | were,obtained |
| R12272 | T15484 | T15484 | ROOT | obtained,obtained |
| R12273 | T15485 | T15484 | prep | in,obtained |
| R12274 | T15486 | T15488 | det | a,experiment |
| R12275 | T15487 | T15488 | amod | second,experiment |
| R12276 | T15488 | T15485 | pobj | experiment,in |
| R12277 | T15489 | T15484 | punct | .,obtained |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15595 | 378-390 | http://purl.obolibrary.org/obo/GO_0009293 | denotes | Transduction |
| T15596 | 512-524 | http://purl.obolibrary.org/obo/GO_0009293 | denotes | transduction |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15597 | 170-178 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
| T15598 | 199-207 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
| T15599 | 306-314 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
| T15600 | 367-375 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15601 | 107-112 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T15602 | 170-178 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibody |
| T15603 | 199-207 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibody |
| T15604 | 306-314 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibody |
| T15605 | 367-375 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibody |
| T15606 | 170-178 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibody |
| T15607 | 199-207 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibody |
| T15608 | 306-314 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibody |
| T15609 | 367-375 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibody |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15388 | 44-113 | Sentence | denotes | CD40-mediated CD80 upregulation is defective in HOIP-deficient cells. |
| T15389 | 114-377 | Sentence | denotes | Cells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). |
| T15390 | 378-561 | Sentence | denotes | Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. |
| T15391 | 562-615 | Sentence | denotes | Similar results were obtained in a second experiment. |
| T67 | 0-113 | Sentence | denotes | 10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells. |
| T68 | 114-377 | Sentence | denotes | Cells were incubated for 72 hrs with an isotype control antibody (left) or anti-CD40 antibody (right) and then stained for expression of CD80 (filled profiles indicate staining with anti-CD80 antibody; open profiles are staining with an isotype control antibody). |
| T69 | 378-561 | Sentence | denotes | Transduction of both HOIP-deficient (HOIP-/-) clones with a retrovirus encoding FLAG-HOIP reversed defective CD80 upregulation, while transduction with an empty vector (pMIP) did not. |
| T70 | 562-615 | Sentence | denotes | Similar results were obtained in a second experiment. |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15581 | 44-48 | P25942 | denotes | CD40 |
| T15582 | 58-62 | P33681 | denotes | CD80 |
| T15583 | 92-96 | Q96EP0 | denotes | HOIP |
| T15584 | 194-198 | P25942 | denotes | CD40 |
| T15585 | 251-255 | P33681 | denotes | CD80 |
| T15586 | 301-305 | P33681 | denotes | CD80 |
| T15587 | 399-403 | Q96EP0 | denotes | HOIP |
| T15588 | 415-419 | Q96EP0 | denotes | HOIP |
| T15589 | 463-467 | Q96EP0 | denotes | HOIP |
| T15590 | 487-491 | P33681 | denotes | CD80 |
test2
| Id | Subject | Object | Predicate | Lexical cue | Speculation |
|---|---|---|---|---|---|
| T15355 | 44-48 | Protein | denotes | CD40 | |
| T15356 | 49-57 | Positive_regulation | denotes | mediated | |
| T15357 | 58-62 | Protein | denotes | CD80 | |
| T15358 | 63-75 | Positive_regulation | denotes | upregulation | |
| T15359 | 79-88 | Negative_regulation | denotes | defective | true |
| T15360 | 92-96 | Protein | denotes | HOIP | |
| T15361 | 97-106 | Negative_regulation | denotes | deficient | |
| T15362 | 237-247 | Gene_expression | denotes | expression | |
| T15363 | 251-255 | Protein | denotes | CD80 | |
| T15364 | 399-403 | Protein | denotes | HOIP | |
| T15365 | 404-413 | Negative_regulation | denotes | deficient | |
| T15366 | 415-419 | Protein | denotes | HOIP | |
| T15367 | 463-467 | Protein | denotes | HOIP | |
| T15368 | 477-486 | Negative_regulation | denotes | defective | |
| T15369 | 487-491 | Protein | denotes | CD80 | |
| T15370 | 492-504 | Positive_regulation | denotes | upregulation | |
| R12159 | T15355 | T15356 | causeOf | CD40,mediated | |
| R12160 | T15356 | T15359 | themeOf | mediated,defective | |
| R12161 | T15357 | T15358 | themeOf | CD80,upregulation | |
| R12162 | T15358 | T15356 | themeOf | upregulation,mediated | |
| R12163 | T15358 | T15359 | themeOf | upregulation,defective | |
| R12164 | T15360 | T15361 | themeOf | HOIP,deficient | |
| R12165 | T15361 | T15359 | causeOf | deficient,defective | |
| R12166 | T15363 | T15362 | themeOf | CD80,expression | |
| R12167 | T15364 | T15365 | themeOf | HOIP,deficient | |
| R12168 | T15369 | T15370 | themeOf | CD80,upregulation | |
| R12169 | T15370 | T15368 | themeOf | upregulation,defective |