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PMC:3148254 / 6312-6487 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2840 55-64 Negative_regulation denotes disrupted
T2841 65-70 Protein denotes Rnf31
T2842 159-174 Protein denotes Cre recombinase
R2114 T2841 T2840 themeOf Rnf31,disrupted

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3973 65-70 Protein denotes Rnf31
T3974 159-174 Protein denotes Cre recombinase

events-check-again

Id Subject Object Predicate Lexical cue
T4011 55-64 Negative_regulation denotes disrupted
T4012 65-70 Protein denotes Rnf31
T4013 159-174 Protein denotes Cre recombinase
R3097 T4012 T4011 themeOf Rnf31,disrupted

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3582 0-2 TO denotes To
T3583 3-9 VB denotes remove
T3584 10-13 DT denotes the
T3585 14-24 JJ denotes selectable
T3586 25-31 NN denotes marker
T3587 32-36 NN denotes gene
T3588 37-45 NN denotes cassette
T3589 46-50 IN denotes from
T3590 51-54 DT denotes the
T3591 55-64 VB denotes disrupted
T3592 65-70 NN denotes Rnf31
T3593 71-77 NN denotes allele
T3594 77-78 -COMMA- denotes ,
T3595 79-90 JJ denotes recombinant
T3596 91-95 NN denotes cell
T3597 96-101 NN denotes lines
T3598 102-106 VB denotes were
T3599 107-118 RB denotes transiently
T3600 119-130 VB denotes transfected
T3601 131-135 IN denotes with
T3602 136-137 DT denotes a
T3603 138-145 NN denotes plasmid
T3604 146-150 WDT denotes that
T3605 151-158 VB denotes encodes
T3606 159-162 NNP denotes Cre
T3607 163-174 NN denotes recombinase
R2831 T3583 T3582 arg1Of remove,To
R2832 T3588 T3583 arg2Of cassette,remove
R2833 T3588 T3584 arg1Of cassette,the
R2834 T3588 T3585 arg1Of cassette,selectable
R2835 T3588 T3586 arg1Of cassette,marker
R2836 T3588 T3587 arg1Of cassette,gene
R2837 T3588 T3589 arg1Of cassette,from
R2838 T3593 T3589 arg2Of allele,from
R2839 T3593 T3590 arg1Of allele,the
R2840 T3593 T3591 arg2Of allele,disrupted
R2841 T3593 T3592 arg1Of allele,Rnf31
R2842 T3597 T3595 arg1Of lines,recombinant
R2843 T3597 T3596 arg1Of lines,cell
R2844 T3597 T3598 arg1Of lines,were
R2845 T3597 T3600 arg2Of lines,transfected
R2846 T3600 T3582 modOf transfected,To
R2847 T3600 T3594 arg1Of transfected,","
R2848 T3600 T3598 arg2Of transfected,were
R2849 T3600 T3599 arg1Of transfected,transiently
R2850 T3600 T3601 arg1Of transfected,with
R2851 T3603 T3601 arg2Of plasmid,with
R2852 T3603 T3602 arg1Of plasmid,a
R2853 T3603 T3604 arg1Of plasmid,that
R2854 T3603 T3605 arg1Of plasmid,encodes
R2855 T3607 T3605 arg2Of recombinase,encodes
R2856 T3607 T3606 arg1Of recombinase,Cre

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3131 0-2 TO denotes To
T3132 3-9 VB denotes remove
T3133 10-13 DT denotes the
T3134 14-24 JJ denotes selectable
T3135 25-31 NN denotes marker
T3136 32-36 NN denotes gene
T3137 37-45 NN denotes cassette
T3138 46-50 IN denotes from
T3139 51-54 DT denotes the
T3140 55-64 VBN denotes disrupted
T3141 65-70 NNP denotes Rnf31
T3142 71-77 NN denotes allele
T3143 77-78 , denotes ,
T3144 79-90 JJ denotes recombinant
T3145 91-95 NN denotes cell
T3146 96-101 NNS denotes lines
T3147 102-106 VBD denotes were
T3148 107-118 RB denotes transiently
T3149 119-130 VBN denotes transfected
T3150 131-135 IN denotes with
T3151 136-137 DT denotes a
T3152 138-145 NN denotes plasmid
T3153 146-150 WDT denotes that
T3154 151-158 VBZ denotes encodes
T3155 159-162 NNP denotes Cre
T3156 163-174 NN denotes recombinase
T3157 174-175 . denotes .
R2376 T3131 T3132 aux To,remove
R2377 T3132 T3149 advcl remove,transfected
R2378 T3133 T3137 det the,cassette
R2379 T3134 T3136 amod selectable,gene
R2380 T3135 T3136 compound marker,gene
R2381 T3136 T3137 compound gene,cassette
R2382 T3137 T3132 dobj cassette,remove
R2383 T3138 T3132 prep from,remove
R2384 T3139 T3142 det the,allele
R2385 T3140 T3142 amod disrupted,allele
R2386 T3141 T3142 compound Rnf31,allele
R2387 T3142 T3138 pobj allele,from
R2388 T3143 T3149 punct ",",transfected
R2389 T3144 T3146 amod recombinant,lines
R2390 T3145 T3146 compound cell,lines
R2391 T3146 T3149 nsubjpass lines,transfected
R2392 T3147 T3149 auxpass were,transfected
R2393 T3148 T3149 advmod transiently,transfected
R2394 T3149 T3149 ROOT transfected,transfected
R2395 T3150 T3149 prep with,transfected
R2396 T3151 T3152 det a,plasmid
R2397 T3152 T3150 pobj plasmid,with
R2398 T3153 T3154 nsubj that,encodes
R2399 T3154 T3152 relcl encodes,plasmid
R2400 T3155 T3156 compound Cre,recombinase
R2401 T3156 T3154 dobj recombinase,encodes
R2402 T3157 T3149 punct .,transfected

sentences

Id Subject Object Predicate Lexical cue
T2872 0-175 Sentence denotes To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase.
T44 0-175 Sentence denotes To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3805 65-70 Q96EP0 denotes Rnf31
T3806 159-162 P06956 denotes Cre

test2

Id Subject Object Predicate Lexical cue
T2790 55-64 Negative_regulation denotes disrupted
T2791 65-70 Protein denotes Rnf31
T2792 159-174 Protein denotes Cre recombinase
R2091 T2791 T2790 themeOf Rnf31,disrupted