PMC:3148254 / 6312-6487 JSONTXT

{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T2840","span":{"begin":55,"end":64},"obj":"Negative_regulation"},{"id":"T2841","span":{"begin":65,"end":70},"obj":"Protein"},{"id":"T2842","span":{"begin":159,"end":174},"obj":"Protein"}],"relations":[{"id":"R2114","pred":"themeOf","subj":"T2841","obj":"T2840"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase."}

{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T3973","span":{"begin":65,"end":70},"obj":"Protein"},{"id":"T3974","span":{"begin":159,"end":174},"obj":"Protein"}],"text":"To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase."}

{"project":"events-check-again","denotations":[{"id":"T4011","span":{"begin":55,"end":64},"obj":"Negative_regulation"},{"id":"T4012","span":{"begin":65,"end":70},"obj":"Protein"},{"id":"T4013","span":{"begin":159,"end":174},"obj":"Protein"}],"relations":[{"id":"R3097","pred":"themeOf","subj":"T4012","obj":"T4011"}],"text":"To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase."}

{"project":"pmc-enju-pas","denotations":[{"id":"T3582","span":{"begin":0,"end":2},"obj":"TO"},{"id":"T3583","span":{"begin":3,"end":9},"obj":"VB"},{"id":"T3584","span":{"begin":10,"end":13},"obj":"DT"},{"id":"T3585","span":{"begin":14,"end":24},"obj":"JJ"},{"id":"T3586","span":{"begin":25,"end":31},"obj":"NN"},{"id":"T3587","span":{"begin":32,"end":36},"obj":"NN"},{"id":"T3588","span":{"begin":37,"end":45},"obj":"NN"},{"id":"T3589","span":{"begin":46,"end":50},"obj":"IN"},{"id":"T3590","span":{"begin":51,"end":54},"obj":"DT"},{"id":"T3591","span":{"begin":55,"end":64},"obj":"VB"},{"id":"T3592","span":{"begin":65,"end":70},"obj":"NN"},{"id":"T3593","span":{"begin":71,"end":77},"obj":"NN"},{"id":"T3594","span":{"begin":77,"end":78},"obj":"-COMMA-"},{"id":"T3595","span":{"begin":79,"end":90},"obj":"JJ"},{"id":"T3596","span":{"begin":91,"end":95},"obj":"NN"},{"id":"T3597","span":{"begin":96,"end":101},"obj":"NN"},{"id":"T3598","span":{"begin":102,"end":106},"obj":"VB"},{"id":"T3599","span":{"begin":107,"end":118},"obj":"RB"},{"id":"T3600","span":{"begin":119,"end":130},"obj":"VB"},{"id":"T3601","span":{"begin":131,"end":135},"obj":"IN"},{"id":"T3602","span":{"begin":136,"end":137},"obj":"DT"},{"id":"T3603","span":{"begin":138,"end":145},"obj":"NN"},{"id":"T3604","span":{"begin":146,"end":150},"obj":"WDT"},{"id":"T3605","span":{"begin":151,"end":158},"obj":"VB"},{"id":"T3606","span":{"begin":159,"end":162},"obj":"NNP"},{"id":"T3607","span":{"begin":163,"end":174},"obj":"NN"}],"relations":[{"id":"R2831","pred":"arg1Of","subj":"T3583","obj":"T3582"},{"id":"R2832","pred":"arg2Of","subj":"T3588","obj":"T3583"},{"id":"R2833","pred":"arg1Of","subj":"T3588","obj":"T3584"},{"id":"R2834","pred":"arg1Of","subj":"T3588","obj":"T3585"},{"id":"R2835","pred":"arg1Of","subj":"T3588","obj":"T3586"},{"id":"R2836","pred":"arg1Of","subj":"T3588","obj":"T3587"},{"id":"R2837","pred":"arg1Of","subj":"T3588","obj":"T3589"},{"id":"R2838","pred":"arg2Of","subj":"T3593","obj":"T3589"},{"id":"R2839","pred":"arg1Of","subj":"T3593","obj":"T3590"},{"id":"R2840","pred":"arg2Of","subj":"T3593","obj":"T3591"},{"id":"R2841","pred":"arg1Of","subj":"T3593","obj":"T3592"},{"id":"R2842","pred":"arg1Of","subj":"T3597","obj":"T3595"},{"id":"R2843","pred":"arg1Of","subj":"T3597","obj":"T3596"},{"id":"R2844","pred":"arg1Of","subj":"T3597","obj":"T3598"},{"id":"R2845","pred":"arg2Of","subj":"T3597","obj":"T3600"},{"id":"R2846","pred":"modOf","subj":"T3600","obj":"T3582"},{"id":"R2847","pred":"arg1Of","subj":"T3600","obj":"T3594"},{"id":"R2848","pred":"arg2Of","subj":"T3600","obj":"T3598"},{"id":"R2849","pred":"arg1Of","subj":"T3600","obj":"T3599"},{"id":"R2850","pred":"arg1Of","subj":"T3600","obj":"T3601"},{"id":"R2851","pred":"arg2Of","subj":"T3603","obj":"T3601"},{"id":"R2852","pred":"arg1Of","subj":"T3603","obj":"T3602"},{"id":"R2853","pred":"arg1Of","subj":"T3603","obj":"T3604"},{"id":"R2854","pred":"arg1Of","subj":"T3603","obj":"T3605"},{"id":"R2855","pred":"arg2Of","subj":"T3607","obj":"T3605"},{"id":"R2856","pred":"arg1Of","subj":"T3607","obj":"T3606"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase."}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T3131","span":{"begin":0,"end":2},"obj":"TO"},{"id":"T3132","span":{"begin":3,"end":9},"obj":"VB"},{"id":"T3133","span":{"begin":10,"end":13},"obj":"DT"},{"id":"T3134","span":{"begin":14,"end":24},"obj":"JJ"},{"id":"T3135","span":{"begin":25,"end":31},"obj":"NN"},{"id":"T3136","span":{"begin":32,"end":36},"obj":"NN"},{"id":"T3137","span":{"begin":37,"end":45},"obj":"NN"},{"id":"T3138","span":{"begin":46,"end":50},"obj":"IN"},{"id":"T3139","span":{"begin":51,"end":54},"obj":"DT"},{"id":"T3140","span":{"begin":55,"end":64},"obj":"VBN"},{"id":"T3141","span":{"begin":65,"end":70},"obj":"NNP"},{"id":"T3142","span":{"begin":71,"end":77},"obj":"NN"},{"id":"T3143","span":{"begin":77,"end":78},"obj":","},{"id":"T3144","span":{"begin":79,"end":90},"obj":"JJ"},{"id":"T3145","span":{"begin":91,"end":95},"obj":"NN"},{"id":"T3146","span":{"begin":96,"end":101},"obj":"NNS"},{"id":"T3147","span":{"begin":102,"end":106},"obj":"VBD"},{"id":"T3148","span":{"begin":107,"end":118},"obj":"RB"},{"id":"T3149","span":{"begin":119,"end":130},"obj":"VBN"},{"id":"T3150","span":{"begin":131,"end":135},"obj":"IN"},{"id":"T3151","span":{"begin":136,"end":137},"obj":"DT"},{"id":"T3152","span":{"begin":138,"end":145},"obj":"NN"},{"id":"T3153","span":{"begin":146,"end":150},"obj":"WDT"},{"id":"T3154","span":{"begin":151,"end":158},"obj":"VBZ"},{"id":"T3155","span":{"begin":159,"end":162},"obj":"NNP"},{"id":"T3156","span":{"begin":163,"end":174},"obj":"NN"},{"id":"T3157","span":{"begin":174,"end":175},"obj":"."}],"relations":[{"id":"R2376","pred":"aux","subj":"T3131","obj":"T3132"},{"id":"R2377","pred":"advcl","subj":"T3132","obj":"T3149"},{"id":"R2378","pred":"det","subj":"T3133","obj":"T3137"},{"id":"R2379","pred":"amod","subj":"T3134","obj":"T3136"},{"id":"R2380","pred":"compound","subj":"T3135","obj":"T3136"},{"id":"R2381","pred":"compound","subj":"T3136","obj":"T3137"},{"id":"R2382","pred":"dobj","subj":"T3137","obj":"T3132"},{"id":"R2383","pred":"prep","subj":"T3138","obj":"T3132"},{"id":"R2384","pred":"det","subj":"T3139","obj":"T3142"},{"id":"R2385","pred":"amod","subj":"T3140","obj":"T3142"},{"id":"R2386","pred":"compound","subj":"T3141","obj":"T3142"},{"id":"R2387","pred":"pobj","subj":"T3142","obj":"T3138"},{"id":"R2388","pred":"punct","subj":"T3143","obj":"T3149"},{"id":"R2389","pred":"amod","subj":"T3144","obj":"T3146"},{"id":"R2390","pred":"compound","subj":"T3145","obj":"T3146"},{"id":"R2391","pred":"nsubjpass","subj":"T3146","obj":"T3149"},{"id":"R2392","pred":"auxpass","subj":"T3147","obj":"T3149"},{"id":"R2393","pred":"advmod","subj":"T3148","obj":"T3149"},{"id":"R2394","pred":"ROOT","subj":"T3149","obj":"T3149"},{"id":"R2395","pred":"prep","subj":"T3150","obj":"T3149"},{"id":"R2396","pred":"det","subj":"T3151","obj":"T3152"},{"id":"R2397","pred":"pobj","subj":"T3152","obj":"T3150"},{"id":"R2398","pred":"nsubj","subj":"T3153","obj":"T3154"},{"id":"R2399","pred":"relcl","subj":"T3154","obj":"T3152"},{"id":"R2400","pred":"compound","subj":"T3155","obj":"T3156"},{"id":"R2401","pred":"dobj","subj":"T3156","obj":"T3154"},{"id":"R2402","pred":"punct","subj":"T3157","obj":"T3149"}],"text":"To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase."}

{"project":"sentences","denotations":[{"id":"T2872","span":{"begin":0,"end":175},"obj":"Sentence"},{"id":"T44","span":{"begin":0,"end":175},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase."}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T3805","span":{"begin":65,"end":70},"obj":"Q96EP0"},{"id":"T3806","span":{"begin":159,"end":162},"obj":"P06956"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase."}

{"project":"test2","denotations":[{"id":"T2790","span":{"begin":55,"end":64},"obj":"Negative_regulation"},{"id":"T2791","span":{"begin":65,"end":70},"obj":"Protein"},{"id":"T2792","span":{"begin":159,"end":174},"obj":"Protein"}],"relations":[{"id":"R2091","pred":"themeOf","subj":"T2791","obj":"T2790"}],"text":"To remove the selectable marker gene cassette from the disrupted Rnf31 allele, recombinant cell lines were transiently transfected with a plasmid that encodes Cre recombinase."}