PMC:3148254 / 5566-5750 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/3148254","sourcedb":"PMC","sourceid":"3148254","source_url":"http://www.ncbi.nlm.nih.gov/pmc/3148254","text":"To further define the role and evaluate the importance of HOIP in CD40 signaling, we used somatic cell gene targeting to disrupt the gene encoding HOIP in the mouse B cell line A20.2J.","tracks":[{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T2831","span":{"begin":58,"end":62},"obj":"Protein"},{"id":"T2832","span":{"begin":66,"end":70},"obj":"Protein"},{"id":"T2833","span":{"begin":121,"end":128},"obj":"Negative_regulation"},{"id":"T2834","span":{"begin":147,"end":151},"obj":"Protein"}],"relations":[{"id":"R2111","pred":"themeOf","subj":"T2834","obj":"T2833"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"attributes":[{"subj":"T2831","pred":"source","obj":"bionlp-st-ge-2016-reference"},{"subj":"T2832","pred":"source","obj":"bionlp-st-ge-2016-reference"},{"subj":"T2833","pred":"source","obj":"bionlp-st-ge-2016-reference"},{"subj":"T2834","pred":"source","obj":"bionlp-st-ge-2016-reference"}]},{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T3969","span":{"begin":66,"end":70},"obj":"Protein"}],"attributes":[{"subj":"T3969","pred":"source","obj":"bionlp-st-ge-2016-reference-tees"}]},{"project":"events-check-again","denotations":[{"id":"T4002","span":{"begin":58,"end":62},"obj":"Protein"},{"id":"T4003","span":{"begin":66,"end":70},"obj":"Protein"},{"id":"T4004","span":{"begin":121,"end":128},"obj":"Negative_regulation"},{"id":"T4005","span":{"begin":147,"end":151},"obj":"Protein"}],"relations":[{"id":"R3117","pred":"themeOf","subj":"T4005","obj":"T4004"}],"attributes":[{"subj":"T4002","pred":"source","obj":"events-check-again"},{"subj":"T4003","pred":"source","obj":"events-check-again"},{"subj":"T4004","pred":"source","obj":"events-check-again"},{"subj":"T4005","pred":"source","obj":"events-check-again"}]},{"project":"pmc-enju-pas","denotations":[{"id":"T3448","span":{"begin":0,"end":2},"obj":"TO"},{"id":"T3449","span":{"begin":3,"end":10},"obj":"RB"},{"id":"T3450","span":{"begin":11,"end":17},"obj":"VB"},{"id":"T3451","span":{"begin":18,"end":21},"obj":"DT"},{"id":"T3452","span":{"begin":22,"end":26},"obj":"NN"},{"id":"T3453","span":{"begin":27,"end":30},"obj":"CC"},{"id":"T3454","span":{"begin":31,"end":39},"obj":"VB"},{"id":"T3455","span":{"begin":40,"end":43},"obj":"DT"},{"id":"T3456","span":{"begin":44,"end":54},"obj":"NN"},{"id":"T3457","span":{"begin":55,"end":57},"obj":"IN"},{"id":"T3458","span":{"begin":58,"end":62},"obj":"NN"},{"id":"T3459","span":{"begin":63,"end":65},"obj":"IN"},{"id":"T3460","span":{"begin":66,"end":70},"obj":"NN"},{"id":"T3461","span":{"begin":71,"end":80},"obj":"NN"},{"id":"T3462","span":{"begin":80,"end":81},"obj":"-COMMA-"},{"id":"T3463","span":{"begin":82,"end":84},"obj":"PRP"},{"id":"T3464","span":{"begin":85,"end":89},"obj":"VB"},{"id":"T3465","span":{"begin":90,"end":97},"obj":"JJ"},{"id":"T3466","span":{"begin":98,"end":102},"obj":"NN"},{"id":"T3467","span":{"begin":103,"end":107},"obj":"NN"},{"id":"T3468","span":{"begin":108,"end":117},"obj":"VB"},{"id":"T3469","span":{"begin":118,"end":120},"obj":"TO"},{"id":"T3470","span":{"begin":121,"end":128},"obj":"VB"},{"id":"T3471","span":{"begin":129,"end":132},"obj":"DT"},{"id":"T3472","span":{"begin":133,"end":137},"obj":"NN"},{"id":"T3473","span":{"begin":138,"end":146},"obj":"VB"},{"id":"T3474","span":{"begin":147,"end":151},"obj":"NN"},{"id":"T3475","span":{"begin":152,"end":154},"obj":"IN"},{"id":"T3476","span":{"begin":155,"end":158},"obj":"DT"},{"id":"T3477","span":{"begin":159,"end":164},"obj":"NN"},{"id":"T3478","span":{"begin":165,"end":166},"obj":"NN"},{"id":"T3479","span":{"begin":167,"end":171},"obj":"NN"},{"id":"T3480","span":{"begin":172,"end":176},"obj":"NN"},{"id":"T3481","span":{"begin":177,"end":183},"obj":"NN"}],"relations":[{"id":"R2692","pred":"arg1Of","subj":"T3450","obj":"T3453"},{"id":"R2693","pred":"arg2Of","subj":"T3452","obj":"T3450"},{"id":"R2694","pred":"arg1Of","subj":"T3452","obj":"T3451"},{"id":"R2695","pred":"arg1Of","subj":"T3453","obj":"T3448"},{"id":"R2696","pred":"arg1Of","subj":"T3453","obj":"T3449"},{"id":"R2697","pred":"arg2Of","subj":"T3454","obj":"T3453"},{"id":"R2698","pred":"arg2Of","subj":"T3456","obj":"T3454"},{"id":"R2699","pred":"arg1Of","subj":"T3456","obj":"T3455"},{"id":"R2700","pred":"arg1Of","subj":"T3456","obj":"T3457"},{"id":"R2701","pred":"arg1Of","subj":"T3456","obj":"T3459"},{"id":"R2702","pred":"arg2Of","subj":"T3458","obj":"T3457"},{"id":"R2703","pred":"arg2Of","subj":"T3461","obj":"T3459"},{"id":"R2704","pred":"arg1Of","subj":"T3461","obj":"T3460"},{"id":"R2705","pred":"arg1Of","subj":"T3463","obj":"T3450"},{"id":"R2706","pred":"arg1Of","subj":"T3463","obj":"T3454"},{"id":"R2707","pred":"arg1Of","subj":"T3463","obj":"T3464"},{"id":"R2708","pred":"modOf","subj":"T3464","obj":"T3448"},{"id":"R2709","pred":"arg1Of","subj":"T3464","obj":"T3462"},{"id":"R2710","pred":"arg2Of","subj":"T3467","obj":"T3464"},{"id":"R2711","pred":"arg1Of","subj":"T3467","obj":"T3465"},{"id":"R2712","pred":"arg1Of","subj":"T3467","obj":"T3466"},{"id":"R2713","pred":"arg1Of","subj":"T3467","obj":"T3468"},{"id":"R2714","pred":"modOf","subj":"T3468","obj":"T3469"},{"id":"R2715","pred":"arg1Of","subj":"T3470","obj":"T3469"},{"id":"R2716","pred":"arg2Of","subj":"T3472","obj":"T3470"},{"id":"R2717","pred":"arg1Of","subj":"T3472","obj":"T3471"},{"id":"R2718","pred":"arg1Of","subj":"T3472","obj":"T3473"},{"id":"R2719","pred":"arg1Of","subj":"T3473","obj":"T3475"},{"id":"R2720","pred":"arg2Of","subj":"T3474","obj":"T3473"},{"id":"R2721","pred":"arg2Of","subj":"T3480","obj":"T3475"},{"id":"R2722","pred":"arg1Of","subj":"T3480","obj":"T3476"},{"id":"R2723","pred":"arg1Of","subj":"T3480","obj":"T3477"},{"id":"R2724","pred":"arg1Of","subj":"T3480","obj":"T3478"},{"id":"R2725","pred":"arg1Of","subj":"T3480","obj":"T3479"},{"id":"R2726","pred":"arg2Of","subj":"T3481","obj":"T3468"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"attributes":[{"subj":"T3448","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3449","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3450","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3451","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3452","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3453","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3454","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3455","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3456","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3457","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3458","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3459","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3460","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3461","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3462","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3463","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3464","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3465","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3466","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3467","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3468","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3469","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3470","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3471","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3472","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3473","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3474","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3475","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3476","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3477","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3478","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3479","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3480","pred":"source","obj":"pmc-enju-pas"},{"subj":"T3481","pred":"source","obj":"pmc-enju-pas"}]},{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T2991","span":{"begin":0,"end":2},"obj":"TO"},{"id":"T2992","span":{"begin":3,"end":10},"obj":"RBR"},{"id":"T2993","span":{"begin":11,"end":17},"obj":"VB"},{"id":"T2994","span":{"begin":18,"end":21},"obj":"DT"},{"id":"T2995","span":{"begin":22,"end":26},"obj":"NN"},{"id":"T2996","span":{"begin":27,"end":30},"obj":"CC"},{"id":"T2997","span":{"begin":31,"end":39},"obj":"VB"},{"id":"T2998","span":{"begin":40,"end":43},"obj":"DT"},{"id":"T2999","span":{"begin":44,"end":54},"obj":"NN"},{"id":"T3000","span":{"begin":55,"end":57},"obj":"IN"},{"id":"T3001","span":{"begin":58,"end":62},"obj":"NNP"},{"id":"T3002","span":{"begin":63,"end":65},"obj":"IN"},{"id":"T3003","span":{"begin":66,"end":70},"obj":"NNP"},{"id":"T3004","span":{"begin":71,"end":80},"obj":"VBG"},{"id":"T3005","span":{"begin":80,"end":81},"obj":","},{"id":"T3006","span":{"begin":82,"end":84},"obj":"PRP"},{"id":"T3007","span":{"begin":85,"end":89},"obj":"VBD"},{"id":"T3008","span":{"begin":90,"end":97},"obj":"JJ"},{"id":"T3009","span":{"begin":98,"end":102},"obj":"NN"},{"id":"T3010","span":{"begin":103,"end":107},"obj":"NN"},{"id":"T3011","span":{"begin":108,"end":117},"obj":"VBG"},{"id":"T3012","span":{"begin":118,"end":120},"obj":"TO"},{"id":"T3013","span":{"begin":121,"end":128},"obj":"VB"},{"id":"T3014","span":{"begin":129,"end":132},"obj":"DT"},{"id":"T3015","span":{"begin":133,"end":137},"obj":"NN"},{"id":"T3016","span":{"begin":138,"end":146},"obj":"VBG"},{"id":"T3017","span":{"begin":147,"end":151},"obj":"NNP"},{"id":"T3018","span":{"begin":152,"end":154},"obj":"IN"},{"id":"T3019","span":{"begin":155,"end":158},"obj":"DT"},{"id":"T3020","span":{"begin":159,"end":164},"obj":"NN"},{"id":"T3021","span":{"begin":165,"end":166},"obj":"NNP"},{"id":"T3022","span":{"begin":167,"end":171},"obj":"NN"},{"id":"T3023","span":{"begin":172,"end":176},"obj":"NN"},{"id":"T3024","span":{"begin":177,"end":180},"obj":"NNP"},{"id":"T3025","span":{"begin":180,"end":182},"obj":"CD"},{"id":"T3026","span":{"begin":182,"end":183},"obj":"NNP"},{"id":"T3027","span":{"begin":183,"end":184},"obj":"."}],"relations":[{"id":"R2236","pred":"aux","subj":"T2991","obj":"T2993"},{"id":"R2237","pred":"advmod","subj":"T2992","obj":"T2993"},{"id":"R2238","pred":"advcl","subj":"T2993","obj":"T3007"},{"id":"R2239","pred":"det","subj":"T2994","obj":"T2995"},{"id":"R2240","pred":"dobj","subj":"T2995","obj":"T2993"},{"id":"R2241","pred":"cc","subj":"T2996","obj":"T2993"},{"id":"R2242","pred":"conj","subj":"T2997","obj":"T2993"},{"id":"R2243","pred":"det","subj":"T2998","obj":"T2999"},{"id":"R2244","pred":"dobj","subj":"T2999","obj":"T2997"},{"id":"R2245","pred":"prep","subj":"T3000","obj":"T2999"},{"id":"R2246","pred":"pobj","subj":"T3001","obj":"T3000"},{"id":"R2247","pred":"prep","subj":"T3002","obj":"T2997"},{"id":"R2248","pred":"pobj","subj":"T3003","obj":"T3002"},{"id":"R2249","pred":"advcl","subj":"T3004","obj":"T2997"},{"id":"R2250","pred":"punct","subj":"T3005","obj":"T3007"},{"id":"R2251","pred":"nsubj","subj":"T3006","obj":"T3007"},{"id":"R2252","pred":"ROOT","subj":"T3007","obj":"T3007"},{"id":"R2253","pred":"compound","subj":"T3008","obj":"T3010"},{"id":"R2254","pred":"compound","subj":"T3009","obj":"T3010"},{"id":"R2255","pred":"dobj","subj":"T3010","obj":"T3007"},{"id":"R2256","pred":"acl","subj":"T3011","obj":"T3010"},{"id":"R2257","pred":"aux","subj":"T3012","obj":"T3013"},{"id":"R2258","pred":"xcomp","subj":"T3013","obj":"T3011"},{"id":"R2259","pred":"det","subj":"T3014","obj":"T3015"},{"id":"R2260","pred":"dobj","subj":"T3015","obj":"T3013"},{"id":"R2261","pred":"acl","subj":"T3016","obj":"T3015"},{"id":"R2262","pred":"dobj","subj":"T3017","obj":"T3016"},{"id":"R2263","pred":"prep","subj":"T3018","obj":"T3016"},{"id":"R2264","pred":"det","subj":"T3019","obj":"T3023"},{"id":"R2265","pred":"compound","subj":"T3020","obj":"T3022"},{"id":"R2266","pred":"compound","subj":"T3021","obj":"T3022"},{"id":"R2267","pred":"compound","subj":"T3022","obj":"T3023"},{"id":"R2268","pred":"pobj","subj":"T3023","obj":"T3018"},{"id":"R2269","pred":"nmod","subj":"T3024","obj":"T3026"},{"id":"R2270","pred":"nummod","subj":"T3025","obj":"T3026"},{"id":"R2271","pred":"appos","subj":"T3026","obj":"T3023"},{"id":"R2272","pred":"punct","subj":"T3027","obj":"T3007"}],"attributes":[{"subj":"T2991","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2992","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2993","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2994","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2995","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2996","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2997","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2998","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2999","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3000","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3001","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3002","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3003","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3004","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3005","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3006","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3007","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3008","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3009","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3010","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3011","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3012","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3013","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3014","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3015","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3016","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3017","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3018","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3019","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3020","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3021","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3022","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3023","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3024","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3025","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3026","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T3027","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"}]},{"project":"GO-BP","denotations":[{"id":"T3836","span":{"begin":71,"end":80},"obj":"http://purl.obolibrary.org/obo/GO_0023052"}],"attributes":[{"subj":"T3836","pred":"source","obj":"GO-BP"}]},{"project":"sentences","denotations":[{"id":"T2868","span":{"begin":0,"end":184},"obj":"Sentence"},{"id":"T40","span":{"begin":0,"end":184},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T2868","pred":"source","obj":"sentences"},{"subj":"T40","pred":"source","obj":"sentences"}]},{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T3796","span":{"begin":58,"end":62},"obj":"Q96EP0"},{"id":"T3797","span":{"begin":66,"end":70},"obj":"P25942"},{"id":"T3798","span":{"begin":147,"end":151},"obj":"Q96EP0"},{"id":"T3799","span":{"begin":177,"end":180},"obj":"P21580"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"attributes":[{"subj":"T3796","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T3797","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T3798","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T3799","pred":"source","obj":"bionlp-st-ge-2016-uniprot"}]},{"project":"test2","denotations":[{"id":"T2781","span":{"begin":58,"end":62},"obj":"Protein"},{"id":"T2782","span":{"begin":66,"end":70},"obj":"Protein"},{"id":"T2783","span":{"begin":121,"end":128},"obj":"Negative_regulation"},{"id":"T2784","span":{"begin":147,"end":151},"obj":"Protein"}],"relations":[{"id":"R2088","pred":"themeOf","subj":"T2784","obj":"T2783"}],"attributes":[{"subj":"T2781","pred":"source","obj":"test2"},{"subj":"T2782","pred":"source","obj":"test2"},{"subj":"T2783","pred":"source","obj":"test2"},{"subj":"T2784","pred":"source","obj":"test2"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"bionlp-st-ge-2016-reference","color":"#93ecc0","default":true},{"id":"bionlp-st-ge-2016-reference-tees","color":"#eca693"},{"id":"events-check-again","color":"#9399ec"},{"id":"pmc-enju-pas","color":"#b3ec93"},{"id":"bionlp-st-ge-2016-spacy-parsed","color":"#ec93cd"},{"id":"GO-BP","color":"#93e7ec"},{"id":"sentences","color":"#ecd793"},{"id":"bionlp-st-ge-2016-uniprot","color":"#bc93ec"},{"id":"test2","color":"#93eca2"}]}]}}