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PMC:3148254 / 5566-5750 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2831 58-62 Protein denotes HOIP
T2832 66-70 Protein denotes CD40
T2833 121-128 Negative_regulation denotes disrupt
T2834 147-151 Protein denotes HOIP
R2111 T2834 T2833 themeOf HOIP,disrupt

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3969 66-70 Protein denotes CD40

events-check-again

Id Subject Object Predicate Lexical cue
T4002 58-62 Protein denotes HOIP
T4003 66-70 Protein denotes CD40
T4004 121-128 Negative_regulation denotes disrupt
T4005 147-151 Protein denotes HOIP
R3117 T4005 T4004 themeOf HOIP,disrupt

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3448 0-2 TO denotes To
T3449 3-10 RB denotes further
T3450 11-17 VB denotes define
T3451 18-21 DT denotes the
T3452 22-26 NN denotes role
T3453 27-30 CC denotes and
T3454 31-39 VB denotes evaluate
T3455 40-43 DT denotes the
T3456 44-54 NN denotes importance
T3457 55-57 IN denotes of
T3458 58-62 NN denotes HOIP
T3459 63-65 IN denotes in
T3460 66-70 NN denotes CD40
T3461 71-80 NN denotes signaling
T3462 80-81 -COMMA- denotes ,
T3463 82-84 PRP denotes we
T3464 85-89 VB denotes used
T3465 90-97 JJ denotes somatic
T3466 98-102 NN denotes cell
T3467 103-107 NN denotes gene
T3468 108-117 VB denotes targeting
T3469 118-120 TO denotes to
T3470 121-128 VB denotes disrupt
T3471 129-132 DT denotes the
T3472 133-137 NN denotes gene
T3473 138-146 VB denotes encoding
T3474 147-151 NN denotes HOIP
T3475 152-154 IN denotes in
T3476 155-158 DT denotes the
T3477 159-164 NN denotes mouse
T3478 165-166 NN denotes B
T3479 167-171 NN denotes cell
T3480 172-176 NN denotes line
T3481 177-183 NN denotes A20.2J
R2692 T3450 T3453 arg1Of define,and
R2693 T3452 T3450 arg2Of role,define
R2694 T3452 T3451 arg1Of role,the
R2695 T3453 T3448 arg1Of and,To
R2696 T3453 T3449 arg1Of and,further
R2697 T3454 T3453 arg2Of evaluate,and
R2698 T3456 T3454 arg2Of importance,evaluate
R2699 T3456 T3455 arg1Of importance,the
R2700 T3456 T3457 arg1Of importance,of
R2701 T3456 T3459 arg1Of importance,in
R2702 T3458 T3457 arg2Of HOIP,of
R2703 T3461 T3459 arg2Of signaling,in
R2704 T3461 T3460 arg1Of signaling,CD40
R2705 T3463 T3450 arg1Of we,define
R2706 T3463 T3454 arg1Of we,evaluate
R2707 T3463 T3464 arg1Of we,used
R2708 T3464 T3448 modOf used,To
R2709 T3464 T3462 arg1Of used,","
R2710 T3467 T3464 arg2Of gene,used
R2711 T3467 T3465 arg1Of gene,somatic
R2712 T3467 T3466 arg1Of gene,cell
R2713 T3467 T3468 arg1Of gene,targeting
R2714 T3468 T3469 modOf targeting,to
R2715 T3470 T3469 arg1Of disrupt,to
R2716 T3472 T3470 arg2Of gene,disrupt
R2717 T3472 T3471 arg1Of gene,the
R2718 T3472 T3473 arg1Of gene,encoding
R2719 T3473 T3475 arg1Of encoding,in
R2720 T3474 T3473 arg2Of HOIP,encoding
R2721 T3480 T3475 arg2Of line,in
R2722 T3480 T3476 arg1Of line,the
R2723 T3480 T3477 arg1Of line,mouse
R2724 T3480 T3478 arg1Of line,B
R2725 T3480 T3479 arg1Of line,cell
R2726 T3481 T3468 arg2Of A20.2J,targeting

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2991 0-2 TO denotes To
T2992 3-10 RBR denotes further
T2993 11-17 VB denotes define
T2994 18-21 DT denotes the
T2995 22-26 NN denotes role
T2996 27-30 CC denotes and
T2997 31-39 VB denotes evaluate
T2998 40-43 DT denotes the
T2999 44-54 NN denotes importance
T3000 55-57 IN denotes of
T3001 58-62 NNP denotes HOIP
T3002 63-65 IN denotes in
T3003 66-70 NNP denotes CD40
T3004 71-80 VBG denotes signaling
T3005 80-81 , denotes ,
T3006 82-84 PRP denotes we
T3007 85-89 VBD denotes used
T3008 90-97 JJ denotes somatic
T3009 98-102 NN denotes cell
T3010 103-107 NN denotes gene
T3011 108-117 VBG denotes targeting
T3012 118-120 TO denotes to
T3013 121-128 VB denotes disrupt
T3014 129-132 DT denotes the
T3015 133-137 NN denotes gene
T3016 138-146 VBG denotes encoding
T3017 147-151 NNP denotes HOIP
T3018 152-154 IN denotes in
T3019 155-158 DT denotes the
T3020 159-164 NN denotes mouse
T3021 165-166 NNP denotes B
T3022 167-171 NN denotes cell
T3023 172-176 NN denotes line
T3024 177-180 NNP denotes A20
T3025 180-182 CD denotes .2
T3026 182-183 NNP denotes J
T3027 183-184 . denotes .
R2236 T2991 T2993 aux To,define
R2237 T2992 T2993 advmod further,define
R2238 T2993 T3007 advcl define,used
R2239 T2994 T2995 det the,role
R2240 T2995 T2993 dobj role,define
R2241 T2996 T2993 cc and,define
R2242 T2997 T2993 conj evaluate,define
R2243 T2998 T2999 det the,importance
R2244 T2999 T2997 dobj importance,evaluate
R2245 T3000 T2999 prep of,importance
R2246 T3001 T3000 pobj HOIP,of
R2247 T3002 T2997 prep in,evaluate
R2248 T3003 T3002 pobj CD40,in
R2249 T3004 T2997 advcl signaling,evaluate
R2250 T3005 T3007 punct ",",used
R2251 T3006 T3007 nsubj we,used
R2252 T3007 T3007 ROOT used,used
R2253 T3008 T3010 compound somatic,gene
R2254 T3009 T3010 compound cell,gene
R2255 T3010 T3007 dobj gene,used
R2256 T3011 T3010 acl targeting,gene
R2257 T3012 T3013 aux to,disrupt
R2258 T3013 T3011 xcomp disrupt,targeting
R2259 T3014 T3015 det the,gene
R2260 T3015 T3013 dobj gene,disrupt
R2261 T3016 T3015 acl encoding,gene
R2262 T3017 T3016 dobj HOIP,encoding
R2263 T3018 T3016 prep in,encoding
R2264 T3019 T3023 det the,line
R2265 T3020 T3022 compound mouse,cell
R2266 T3021 T3022 compound B,cell
R2267 T3022 T3023 compound cell,line
R2268 T3023 T3018 pobj line,in
R2269 T3024 T3026 nmod A20,J
R2270 T3025 T3026 nummod .2,J
R2271 T3026 T3023 appos J,line
R2272 T3027 T3007 punct .,used

GO-BP

Id Subject Object Predicate Lexical cue
T3836 71-80 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

sentences

Id Subject Object Predicate Lexical cue
T2868 0-184 Sentence denotes To further define the role and evaluate the importance of HOIP in CD40 signaling, we used somatic cell gene targeting to disrupt the gene encoding HOIP in the mouse B cell line A20.2J.
T40 0-184 Sentence denotes To further define the role and evaluate the importance of HOIP in CD40 signaling, we used somatic cell gene targeting to disrupt the gene encoding HOIP in the mouse B cell line A20.2J.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3796 58-62 Q96EP0 denotes HOIP
T3797 66-70 P25942 denotes CD40
T3798 147-151 Q96EP0 denotes HOIP
T3799 177-180 P21580 denotes A20

test2

Id Subject Object Predicate Lexical cue
T2781 58-62 Protein denotes HOIP
T2782 66-70 Protein denotes CD40
T2783 121-128 Negative_regulation denotes disrupt
T2784 147-151 Protein denotes HOIP
R2088 T2784 T2783 themeOf HOIP,disrupt