PMC:3148254 / 5566-5750
Annnotations
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2831 | 58-62 | Protein | denotes | HOIP |
T2832 | 66-70 | Protein | denotes | CD40 |
T2833 | 121-128 | Negative_regulation | denotes | disrupt |
T2834 | 147-151 | Protein | denotes | HOIP |
R2111 | T2834 | T2833 | themeOf | HOIP,disrupt |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3969 | 66-70 | Protein | denotes | CD40 |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4002 | 58-62 | Protein | denotes | HOIP |
T4003 | 66-70 | Protein | denotes | CD40 |
T4004 | 121-128 | Negative_regulation | denotes | disrupt |
T4005 | 147-151 | Protein | denotes | HOIP |
R3117 | T4005 | T4004 | themeOf | HOIP,disrupt |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3448 | 0-2 | TO | denotes | To |
T3449 | 3-10 | RB | denotes | further |
T3450 | 11-17 | VB | denotes | define |
T3451 | 18-21 | DT | denotes | the |
T3452 | 22-26 | NN | denotes | role |
T3453 | 27-30 | CC | denotes | and |
T3454 | 31-39 | VB | denotes | evaluate |
T3455 | 40-43 | DT | denotes | the |
T3456 | 44-54 | NN | denotes | importance |
T3457 | 55-57 | IN | denotes | of |
T3458 | 58-62 | NN | denotes | HOIP |
T3459 | 63-65 | IN | denotes | in |
T3460 | 66-70 | NN | denotes | CD40 |
T3461 | 71-80 | NN | denotes | signaling |
T3462 | 80-81 | -COMMA- | denotes | , |
T3463 | 82-84 | PRP | denotes | we |
T3464 | 85-89 | VB | denotes | used |
T3465 | 90-97 | JJ | denotes | somatic |
T3466 | 98-102 | NN | denotes | cell |
T3467 | 103-107 | NN | denotes | gene |
T3468 | 108-117 | VB | denotes | targeting |
T3469 | 118-120 | TO | denotes | to |
T3470 | 121-128 | VB | denotes | disrupt |
T3471 | 129-132 | DT | denotes | the |
T3472 | 133-137 | NN | denotes | gene |
T3473 | 138-146 | VB | denotes | encoding |
T3474 | 147-151 | NN | denotes | HOIP |
T3475 | 152-154 | IN | denotes | in |
T3476 | 155-158 | DT | denotes | the |
T3477 | 159-164 | NN | denotes | mouse |
T3478 | 165-166 | NN | denotes | B |
T3479 | 167-171 | NN | denotes | cell |
T3480 | 172-176 | NN | denotes | line |
T3481 | 177-183 | NN | denotes | A20.2J |
R2692 | T3450 | T3453 | arg1Of | define,and |
R2693 | T3452 | T3450 | arg2Of | role,define |
R2694 | T3452 | T3451 | arg1Of | role,the |
R2695 | T3453 | T3448 | arg1Of | and,To |
R2696 | T3453 | T3449 | arg1Of | and,further |
R2697 | T3454 | T3453 | arg2Of | evaluate,and |
R2698 | T3456 | T3454 | arg2Of | importance,evaluate |
R2699 | T3456 | T3455 | arg1Of | importance,the |
R2700 | T3456 | T3457 | arg1Of | importance,of |
R2701 | T3456 | T3459 | arg1Of | importance,in |
R2702 | T3458 | T3457 | arg2Of | HOIP,of |
R2703 | T3461 | T3459 | arg2Of | signaling,in |
R2704 | T3461 | T3460 | arg1Of | signaling,CD40 |
R2705 | T3463 | T3450 | arg1Of | we,define |
R2706 | T3463 | T3454 | arg1Of | we,evaluate |
R2707 | T3463 | T3464 | arg1Of | we,used |
R2708 | T3464 | T3448 | modOf | used,To |
R2709 | T3464 | T3462 | arg1Of | used,"," |
R2710 | T3467 | T3464 | arg2Of | gene,used |
R2711 | T3467 | T3465 | arg1Of | gene,somatic |
R2712 | T3467 | T3466 | arg1Of | gene,cell |
R2713 | T3467 | T3468 | arg1Of | gene,targeting |
R2714 | T3468 | T3469 | modOf | targeting,to |
R2715 | T3470 | T3469 | arg1Of | disrupt,to |
R2716 | T3472 | T3470 | arg2Of | gene,disrupt |
R2717 | T3472 | T3471 | arg1Of | gene,the |
R2718 | T3472 | T3473 | arg1Of | gene,encoding |
R2719 | T3473 | T3475 | arg1Of | encoding,in |
R2720 | T3474 | T3473 | arg2Of | HOIP,encoding |
R2721 | T3480 | T3475 | arg2Of | line,in |
R2722 | T3480 | T3476 | arg1Of | line,the |
R2723 | T3480 | T3477 | arg1Of | line,mouse |
R2724 | T3480 | T3478 | arg1Of | line,B |
R2725 | T3480 | T3479 | arg1Of | line,cell |
R2726 | T3481 | T3468 | arg2Of | A20.2J,targeting |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2991 | 0-2 | TO | denotes | To |
T2992 | 3-10 | RBR | denotes | further |
T2993 | 11-17 | VB | denotes | define |
T2994 | 18-21 | DT | denotes | the |
T2995 | 22-26 | NN | denotes | role |
T2996 | 27-30 | CC | denotes | and |
T2997 | 31-39 | VB | denotes | evaluate |
T2998 | 40-43 | DT | denotes | the |
T2999 | 44-54 | NN | denotes | importance |
T3000 | 55-57 | IN | denotes | of |
T3001 | 58-62 | NNP | denotes | HOIP |
T3002 | 63-65 | IN | denotes | in |
T3003 | 66-70 | NNP | denotes | CD40 |
T3004 | 71-80 | VBG | denotes | signaling |
T3005 | 80-81 | , | denotes | , |
T3006 | 82-84 | PRP | denotes | we |
T3007 | 85-89 | VBD | denotes | used |
T3008 | 90-97 | JJ | denotes | somatic |
T3009 | 98-102 | NN | denotes | cell |
T3010 | 103-107 | NN | denotes | gene |
T3011 | 108-117 | VBG | denotes | targeting |
T3012 | 118-120 | TO | denotes | to |
T3013 | 121-128 | VB | denotes | disrupt |
T3014 | 129-132 | DT | denotes | the |
T3015 | 133-137 | NN | denotes | gene |
T3016 | 138-146 | VBG | denotes | encoding |
T3017 | 147-151 | NNP | denotes | HOIP |
T3018 | 152-154 | IN | denotes | in |
T3019 | 155-158 | DT | denotes | the |
T3020 | 159-164 | NN | denotes | mouse |
T3021 | 165-166 | NNP | denotes | B |
T3022 | 167-171 | NN | denotes | cell |
T3023 | 172-176 | NN | denotes | line |
T3024 | 177-180 | NNP | denotes | A20 |
T3025 | 180-182 | CD | denotes | .2 |
T3026 | 182-183 | NNP | denotes | J |
T3027 | 183-184 | . | denotes | . |
R2236 | T2991 | T2993 | aux | To,define |
R2237 | T2992 | T2993 | advmod | further,define |
R2238 | T2993 | T3007 | advcl | define,used |
R2239 | T2994 | T2995 | det | the,role |
R2240 | T2995 | T2993 | dobj | role,define |
R2241 | T2996 | T2993 | cc | and,define |
R2242 | T2997 | T2993 | conj | evaluate,define |
R2243 | T2998 | T2999 | det | the,importance |
R2244 | T2999 | T2997 | dobj | importance,evaluate |
R2245 | T3000 | T2999 | prep | of,importance |
R2246 | T3001 | T3000 | pobj | HOIP,of |
R2247 | T3002 | T2997 | prep | in,evaluate |
R2248 | T3003 | T3002 | pobj | CD40,in |
R2249 | T3004 | T2997 | advcl | signaling,evaluate |
R2250 | T3005 | T3007 | punct | ",",used |
R2251 | T3006 | T3007 | nsubj | we,used |
R2252 | T3007 | T3007 | ROOT | used,used |
R2253 | T3008 | T3010 | compound | somatic,gene |
R2254 | T3009 | T3010 | compound | cell,gene |
R2255 | T3010 | T3007 | dobj | gene,used |
R2256 | T3011 | T3010 | acl | targeting,gene |
R2257 | T3012 | T3013 | aux | to,disrupt |
R2258 | T3013 | T3011 | xcomp | disrupt,targeting |
R2259 | T3014 | T3015 | det | the,gene |
R2260 | T3015 | T3013 | dobj | gene,disrupt |
R2261 | T3016 | T3015 | acl | encoding,gene |
R2262 | T3017 | T3016 | dobj | HOIP,encoding |
R2263 | T3018 | T3016 | prep | in,encoding |
R2264 | T3019 | T3023 | det | the,line |
R2265 | T3020 | T3022 | compound | mouse,cell |
R2266 | T3021 | T3022 | compound | B,cell |
R2267 | T3022 | T3023 | compound | cell,line |
R2268 | T3023 | T3018 | pobj | line,in |
R2269 | T3024 | T3026 | nmod | A20,J |
R2270 | T3025 | T3026 | nummod | .2,J |
R2271 | T3026 | T3023 | appos | J,line |
R2272 | T3027 | T3007 | punct | .,used |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3836 | 71-80 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2868 | 0-184 | Sentence | denotes | To further define the role and evaluate the importance of HOIP in CD40 signaling, we used somatic cell gene targeting to disrupt the gene encoding HOIP in the mouse B cell line A20.2J. |
T40 | 0-184 | Sentence | denotes | To further define the role and evaluate the importance of HOIP in CD40 signaling, we used somatic cell gene targeting to disrupt the gene encoding HOIP in the mouse B cell line A20.2J. |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3796 | 58-62 | Q96EP0 | denotes | HOIP |
T3797 | 66-70 | P25942 | denotes | CD40 |
T3798 | 147-151 | Q96EP0 | denotes | HOIP |
T3799 | 177-180 | P21580 | denotes | A20 |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2781 | 58-62 | Protein | denotes | HOIP |
T2782 | 66-70 | Protein | denotes | CD40 |
T2783 | 121-128 | Negative_regulation | denotes | disrupt |
T2784 | 147-151 | Protein | denotes | HOIP |
R2088 | T2784 | T2783 | themeOf | HOIP,disrupt |