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PMC:3148254 / 31544-32168 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T13550 0-3 Protein denotes GLε
T13551 25-29 Protein denotes CD40
T13552 30-39 Positive_regulation denotes simulated true
T13553 40-50 Positive_regulation denotes activation
T13554 54-57 Protein denotes GLε
T13555 58-71 Transcription denotes transcription
T13556 260-264 Protein denotes IL-4
T13557 407-410 Protein denotes GLε
T13558 415-420 Protein denotes Hprt1
T13559 549-559 Gene_expression denotes Expression
T13560 563-566 Protein denotes GLε
T13561 604-614 Gene_expression denotes expression
T13562 618-623 Protein denotes Hprt1
R10647 T13551 T13552 causeOf CD40,simulated
R10648 T13553 T13552 themeOf activation,simulated
R10649 T13554 T13555 themeOf GLε,transcription
R10650 T13555 T13553 themeOf transcription,activation
R10651 T13560 T13559 themeOf GLε,Expression
R10652 T13562 T13561 themeOf Hprt1,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T13838 25-29 Protein denotes CD40
T13839 172-176 Protein denotes CD40
T13840 415-420 Protein denotes Hprt1
T13841 618-623 Protein denotes Hprt1
T13842 604-614 Gene_expression denotes expression
R10887 T13841 T13842 themeOf Hprt1,expression

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T13843 0-3 Protein denotes GLε
T13844 25-29 Protein denotes CD40
T13845 30-39 Positive_regulation denotes simulated true
T13846 40-50 Positive_regulation denotes activation
T13847 54-57 Protein denotes GLε
T13848 58-71 Transcription denotes transcription
T13849 260-264 Protein denotes IL-4
T13850 407-410 Protein denotes GLε
T13851 415-420 Protein denotes Hprt1
T13852 549-559 Gene_expression denotes Expression
T13853 563-566 Protein denotes GLε
T13854 604-614 Gene_expression denotes expression
T13855 618-623 Protein denotes Hprt1
R10888 T13844 T13845 causeOf CD40,simulated
R10889 T13846 T13845 themeOf activation,simulated
R10890 T13847 T13848 themeOf GLε,transcription
R10891 T13848 T13846 themeOf transcription,activation
R10892 T13853 T13852 themeOf GLε,Expression
R10893 T13855 T13854 themeOf Hprt1,expression

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13684 0-3 NN denotes GLε
T13685 4-14 NN denotes transcript
T13686 15-20 NN denotes assay
T13687 21-24 DT denotes The
T13688 25-39 JJ denotes CD40-simulated
T13689 40-50 NN denotes activation
T13690 51-53 IN denotes of
T13691 54-57 NN denotes GLε
T13692 58-71 NN denotes transcription
T13693 72-75 VB denotes was
T13694 76-85 VB denotes evaluated
T13695 86-88 IN denotes as
T13696 89-99 RB denotes previously
T13697 100-108 VB denotes reported
T13698 109-110 -LRB- denotes [
T13699 110-112 CD denotes 33
T13700 112-113 -RRB- denotes ]
T13701 115-122 NNP denotes Briefly
T13702 122-123 -COMMA- denotes ,
T13703 124-129 CD denotes 1×106
T13704 130-135 NN denotes cells
T13705 136-140 VB denotes were
T13706 141-151 VB denotes stimulated
T13707 152-161 RB denotes overnight
T13708 162-166 IN denotes with
T13709 167-176 JJ denotes anti-CD40
T13710 177-185 NN denotes antibody
T13711 186-187 -LRB- denotes (
T13712 187-189 CD denotes 10
T13713 190-195 NN denotes µg/ml
T13714 195-196 -RRB- denotes )
T13715 197-199 CC denotes or
T13716 200-202 DT denotes an
T13717 203-210 NN denotes isotype
T13718 211-218 NN denotes control
T13719 219-227 NN denotes antibody
T13720 227-228 -COMMA- denotes ,
T13721 229-233 IN denotes with
T13722 234-236 CC denotes or
T13723 237-244 IN denotes without
T13724 245-248 CD denotes 500
T13725 249-253 NN denotes U/ml
T13726 254-259 NN denotes mouse
T13727 260-264 NN denotes IL-4
T13728 265-266 -LRB- denotes (
T13729 266-268 NN denotes BD
T13730 269-280 NNP denotes Biosciences
T13731 280-281 -RRB- denotes )
T13732 283-286 NN denotes RNA
T13733 287-290 VB denotes was
T13734 291-299 VB denotes isolated
T13735 300-305 VB denotes using
T13736 306-312 NN denotes Trizol
T13737 313-314 -LRB- denotes (
T13738 314-324 NN denotes Invitrogen
T13739 324-325 -RRB- denotes )
T13740 325-326 -COMMA- denotes ,
T13741 327-330 CC denotes and
T13742 331-350 JJ denotes reverse-transcribed
T13743 351-352 -LRB- denotes (
T13744 352-363 NN denotes Superscript
T13745 364-367 CD denotes III
T13746 368-371 NN denotes kit
T13747 371-372 -COMMA- denotes ,
T13748 373-383 NN denotes Invitrogen
T13749 383-384 -RRB- denotes )
T13750 386-398 JJ denotes Quantitative
T13751 399-402 NN denotes PCR
T13752 403-406 IN denotes for
T13753 407-410 NN denotes GLε
T13754 411-414 CC denotes and
T13755 415-420 NN denotes Hprt1
T13756 421-424 VB denotes was
T13757 425-434 VB denotes performed
T13758 435-440 VB denotes using
T13759 441-445 NN denotes SYBR
T13760 446-451 NN denotes GREEN
T13761 452-458 NN denotes master
T13762 459-462 NN denotes mix
T13763 463-464 -LRB- denotes (
T13764 464-471 NNP denotes Applied
T13765 472-482 NNP denotes Biosystems
T13766 482-483 -RRB- denotes )
T13767 483-484 -COMMA- denotes ,
T13768 485-488 CC denotes and
T13769 489-491 DT denotes an
T13770 492-499 NNP denotes Applied
T13771 500-510 NNP denotes Biosystems
T13772 511-517 NNP denotes 7900HT
T13773 518-522 NNP denotes Fast
T13774 523-532 NNP denotes Real-Time
T13775 533-536 NN denotes PCR
T13776 537-547 NN denotes instrument
T13777 549-559 NN denotes Expression
T13778 560-562 IN denotes of
T13779 563-566 NN denotes GLε
T13780 567-569 IN denotes in
T13781 570-574 DT denotes each
T13782 575-581 NN denotes sample
T13783 582-585 VB denotes was
T13784 586-596 VB denotes normalized
T13785 597-599 TO denotes to
T13786 600-603 DT denotes the
T13787 604-614 NN denotes expression
T13788 615-617 IN denotes of
T13789 618-623 NN denotes Hprt1
R10768 T13686 T13684 arg1Of assay,GLε
R10769 T13686 T13685 arg1Of assay,transcript
R10770 T13689 T13687 arg1Of activation,The
R10771 T13689 T13688 arg1Of activation,CD40-simulated
R10772 T13689 T13690 arg1Of activation,of
R10773 T13689 T13693 arg1Of activation,was
R10774 T13689 T13694 arg2Of activation,evaluated
R10775 T13692 T13690 arg2Of transcription,of
R10776 T13692 T13691 arg1Of transcription,GLε
R10777 T13694 T13693 arg2Of evaluated,was
R10778 T13694 T13695 arg1Of evaluated,as
R10779 T13697 T13696 arg1Of reported,previously
R10780 T13699 T13695 arg2Of 33,as
R10781 T13699 T13697 arg1Of 33,reported
R10782 T13699 T13698 arg2Of 33,[
R10783 T13700 T13698 arg3Of ],[
R10784 T13704 T13703 arg1Of cells,1×106
R10785 T13704 T13705 arg1Of cells,were
R10786 T13704 T13706 arg2Of cells,stimulated
R10787 T13706 T13701 arg1Of stimulated,Briefly
R10788 T13706 T13702 arg1Of stimulated,","
R10789 T13706 T13705 arg2Of stimulated,were
R10790 T13706 T13707 arg1Of stimulated,overnight
R10791 T13706 T13708 arg1Of stimulated,with
R10792 T13706 T13720 arg1Of stimulated,","
R10793 T13706 T13721 arg1Of stimulated,with
R10794 T13706 T13723 arg1Of stimulated,without
R10795 T13710 T13709 arg1Of antibody,anti-CD40
R10796 T13710 T13711 arg1Of antibody,(
R10797 T13710 T13715 arg1Of antibody,or
R10798 T13713 T13711 arg2Of µg/ml,(
R10799 T13713 T13712 arg1Of µg/ml,10
R10800 T13714 T13711 arg3Of ),(
R10801 T13715 T13708 arg2Of or,with
R10802 T13719 T13715 arg2Of antibody,or
R10803 T13719 T13716 arg1Of antibody,an
R10804 T13719 T13717 arg1Of antibody,isotype
R10805 T13719 T13718 arg1Of antibody,control
R10806 T13721 T13722 arg1Of with,or
R10807 T13723 T13722 arg2Of without,or
R10808 T13727 T13721 arg2Of IL-4,with
R10809 T13727 T13723 arg2Of IL-4,without
R10810 T13727 T13724 arg1Of IL-4,500
R10811 T13727 T13725 arg1Of IL-4,U/ml
R10812 T13727 T13726 arg1Of IL-4,mouse
R10813 T13727 T13728 arg1Of IL-4,(
R10814 T13730 T13728 arg2Of Biosciences,(
R10815 T13730 T13729 arg1Of Biosciences,BD
R10816 T13731 T13728 arg3Of ),(
R10817 T13732 T13733 arg1Of RNA,was
R10818 T13732 T13734 arg2Of RNA,isolated
R10819 T13734 T13733 arg2Of isolated,was
R10820 T13735 T13734 arg3Of using,isolated
R10821 T13736 T13737 arg1Of Trizol,(
R10822 T13736 T13741 arg1Of Trizol,and
R10823 T13738 T13737 arg2Of Invitrogen,(
R10824 T13739 T13737 arg3Of ),(
R10825 T13741 T13735 arg2Of and,using
R10826 T13741 T13740 arg1Of and,","
R10827 T13742 T13741 arg2Of reverse-transcribed,and
R10828 T13742 T13743 arg1Of reverse-transcribed,(
R10829 T13746 T13743 arg2Of kit,(
R10830 T13746 T13744 arg1Of kit,Superscript
R10831 T13746 T13745 arg1Of kit,III
R10832 T13746 T13747 arg1Of kit,","
R10833 T13748 T13747 arg2Of Invitrogen,","
R10834 T13749 T13743 arg3Of ),(
R10835 T13751 T13750 arg1Of PCR,Quantitative
R10836 T13751 T13752 arg1Of PCR,for
R10837 T13751 T13756 arg1Of PCR,was
R10838 T13751 T13757 arg2Of PCR,performed
R10839 T13753 T13754 arg1Of GLε,and
R10840 T13754 T13752 arg2Of and,for
R10841 T13755 T13754 arg2Of Hprt1,and
R10842 T13757 T13756 arg2Of performed,was
R10843 T13758 T13757 arg3Of using,performed
R10844 T13762 T13759 arg1Of mix,SYBR
R10845 T13762 T13760 arg1Of mix,GREEN
R10846 T13762 T13761 arg1Of mix,master
R10847 T13762 T13763 arg1Of mix,(
R10848 T13762 T13768 arg1Of mix,and
R10849 T13765 T13763 arg2Of Biosystems,(
R10850 T13765 T13764 arg1Of Biosystems,Applied
R10851 T13766 T13763 arg3Of ),(
R10852 T13768 T13758 arg2Of and,using
R10853 T13768 T13767 arg1Of and,","
R10854 T13774 T13770 arg1Of Real-Time,Applied
R10855 T13774 T13771 arg1Of Real-Time,Biosystems
R10856 T13774 T13772 arg1Of Real-Time,7900HT
R10857 T13774 T13773 arg1Of Real-Time,Fast
R10858 T13776 T13768 arg2Of instrument,and
R10859 T13776 T13769 arg1Of instrument,an
R10860 T13776 T13774 arg1Of instrument,Real-Time
R10861 T13776 T13775 arg1Of instrument,PCR
R10862 T13777 T13778 arg1Of Expression,of
R10863 T13777 T13780 arg1Of Expression,in
R10864 T13777 T13783 arg1Of Expression,was
R10865 T13777 T13784 arg2Of Expression,normalized
R10866 T13779 T13778 arg2Of GLε,of
R10867 T13782 T13780 arg2Of sample,in
R10868 T13782 T13781 arg1Of sample,each
R10869 T13784 T13783 arg2Of normalized,was
R10870 T13784 T13785 arg1Of normalized,to
R10871 T13787 T13785 arg2Of expression,to
R10872 T13787 T13786 arg1Of expression,the
R10873 T13787 T13788 arg1Of expression,of
R10874 T13789 T13788 arg2Of Hprt1,of

2_test

Id Subject Object Predicate Lexical cue
21829693-20080759-89653808 110-112 20080759 denotes 33
T37515 110-112 20080759 denotes 33

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13569 0-3 NNP denotes GLε
T13570 4-14 NN denotes transcript
T13571 15-20 NN denotes assay
T13572 21-24 DT denotes The
T13573 25-39 JJ denotes CD40-simulated
T13574 40-50 NN denotes activation
T13575 51-53 IN denotes of
T13576 54-57 NNP denotes GLε
T13577 58-71 NN denotes transcription
T13578 72-75 VBD denotes was
T13579 76-85 VBN denotes evaluated
T13580 86-88 IN denotes as
T13581 89-99 RB denotes previously
T13582 100-108 VBN denotes reported
T13583 109-110 NNP denotes [
T13584 110-112 CD denotes 33
T13585 112-113 NNP denotes ]
T13586 113-114 . denotes .
T13587 115-122 RB denotes Briefly
T13588 122-123 , denotes ,
T13589 124-125 CD denotes 1
T13590 125-126 CD denotes ×
T13591 126-129 CD denotes 106
T13592 130-135 NNS denotes cells
T13593 136-140 VBD denotes were
T13594 141-151 VBN denotes stimulated
T13595 152-161 JJ denotes overnight
T13596 162-166 IN denotes with
T13597 167-176 JJ denotes anti-CD40
T13598 177-185 NN denotes antibody
T13599 186-187 -LRB- denotes (
T13600 187-189 CD denotes 10
T13601 190-192 NN denotes µg
T13602 192-193 NN denotes /
T13603 193-195 NN denotes ml
T13604 195-196 -RRB- denotes )
T13605 197-199 CC denotes or
T13606 200-202 DT denotes an
T13607 203-210 NN denotes isotype
T13608 211-218 NN denotes control
T13609 219-227 NN denotes antibody
T13610 227-228 , denotes ,
T13611 229-233 IN denotes with
T13612 234-236 CC denotes or
T13613 237-244 IN denotes without
T13614 245-248 CD denotes 500
T13615 249-253 NNP denotes U/ml
T13616 254-259 NN denotes mouse
T13617 260-264 NN denotes IL-4
T13618 265-266 -LRB- denotes (
T13619 266-268 NNP denotes BD
T13620 269-280 NNPS denotes Biosciences
T13621 280-281 -RRB- denotes )
T13622 281-282 . denotes .
T13623 283-286 NNP denotes RNA
T13624 287-290 VBD denotes was
T13625 291-299 VBN denotes isolated
T13626 300-305 VBG denotes using
T13627 306-312 NNP denotes Trizol
T13628 313-314 -LRB- denotes (
T13629 314-324 NNP denotes Invitrogen
T13630 324-325 -RRB- denotes )
T13631 325-326 , denotes ,
T13632 327-330 CC denotes and
T13633 331-350 JJ denotes reverse-transcribed
T13634 351-352 -LRB- denotes (
T13635 352-363 NNP denotes Superscript
T13636 364-367 NNP denotes III
T13637 368-371 NN denotes kit
T13638 371-372 , denotes ,
T13639 373-383 NNP denotes Invitrogen
T13640 383-384 -RRB- denotes )
T13641 384-385 . denotes .
T13642 386-398 JJ denotes Quantitative
T13643 399-402 NNP denotes PCR
T13644 403-406 IN denotes for
T13645 407-410 NNP denotes GLε
T13646 411-414 CC denotes and
T13647 415-420 NNP denotes Hprt1
T13648 421-424 VBD denotes was
T13649 425-434 VBN denotes performed
T13650 435-440 VBG denotes using
T13651 441-445 NNP denotes SYBR
T13652 446-451 NNP denotes GREEN
T13653 452-458 NN denotes master
T13654 459-462 NN denotes mix
T13655 463-464 -LRB- denotes (
T13656 464-471 NNP denotes Applied
T13657 472-482 NNPS denotes Biosystems
T13658 482-483 -RRB- denotes )
T13659 483-484 , denotes ,
T13660 485-488 CC denotes and
T13661 489-491 DT denotes an
T13662 492-499 NNP denotes Applied
T13663 500-510 NNPS denotes Biosystems
T13664 511-517 NNP denotes 7900HT
T13665 518-522 NNP denotes Fast
T13666 523-532 NNP denotes Real-Time
T13667 533-536 NNP denotes PCR
T13668 537-547 NN denotes instrument
T13669 547-548 . denotes .
T13670 549-559 NN denotes Expression
T13671 560-562 IN denotes of
T13672 563-566 NNP denotes GLε
T13673 567-569 IN denotes in
T13674 570-574 DT denotes each
T13675 575-581 NN denotes sample
T13676 582-585 VBD denotes was
T13677 586-596 VBN denotes normalized
T13678 597-599 TO denotes to
T13679 600-603 DT denotes the
T13680 604-614 NN denotes expression
T13681 615-617 IN denotes of
T13682 618-623 NNP denotes Hprt1
T13683 623-624 . denotes .
R10653 T13569 T13579 nsubjpass GLε,evaluated
R10654 T13570 T13571 compound transcript,assay
R10655 T13571 T13569 dobj assay,GLε
R10656 T13572 T13574 det The,activation
R10657 T13573 T13574 amod CD40-simulated,activation
R10658 T13574 T13579 nsubjpass activation,evaluated
R10659 T13575 T13574 prep of,activation
R10660 T13576 T13577 compound GLε,transcription
R10661 T13577 T13575 pobj transcription,of
R10662 T13578 T13579 auxpass was,evaluated
R10663 T13579 T13579 ROOT evaluated,evaluated
R10664 T13580 T13582 mark as,reported
R10665 T13581 T13582 advmod previously,reported
R10666 T13582 T13579 advcl reported,evaluated
R10667 T13583 T13585 nmod [,]
R10668 T13584 T13585 nummod 33,]
R10669 T13585 T13582 nsubj ],reported
R10670 T13586 T13579 punct .,evaluated
R10671 T13587 T13594 advmod Briefly,stimulated
R10672 T13588 T13594 punct ",",stimulated
R10673 T13589 T13592 nummod 1,cells
R10674 T13590 T13592 nummod ×,cells
R10675 T13591 T13592 nummod 106,cells
R10676 T13592 T13594 nsubjpass cells,stimulated
R10677 T13593 T13594 auxpass were,stimulated
R10678 T13594 T13594 ROOT stimulated,stimulated
R10679 T13595 T13594 advmod overnight,stimulated
R10680 T13596 T13594 prep with,stimulated
R10681 T13597 T13598 amod anti-CD40,antibody
R10682 T13598 T13596 pobj antibody,with
R10683 T13599 T13598 punct (,antibody
R10684 T13600 T13601 nummod 10,µg
R10685 T13601 T13603 compound µg,ml
R10686 T13602 T13603 compound /,ml
R10687 T13603 T13598 appos ml,antibody
R10688 T13604 T13598 punct ),antibody
R10689 T13605 T13598 cc or,antibody
R10690 T13606 T13609 det an,antibody
R10691 T13607 T13609 compound isotype,antibody
R10692 T13608 T13609 compound control,antibody
R10693 T13609 T13598 conj antibody,antibody
R10694 T13610 T13596 punct ",",with
R10695 T13611 T13596 conj with,with
R10696 T13612 T13611 cc or,with
R10697 T13613 T13611 conj without,with
R10698 T13614 T13617 nummod 500,IL-4
R10699 T13615 T13617 compound U/ml,IL-4
R10700 T13616 T13617 compound mouse,IL-4
R10701 T13617 T13613 pobj IL-4,without
R10702 T13618 T13620 punct (,Biosciences
R10703 T13619 T13620 compound BD,Biosciences
R10704 T13620 T13617 appos Biosciences,IL-4
R10705 T13621 T13620 punct ),Biosciences
R10706 T13622 T13594 punct .,stimulated
R10707 T13623 T13625 nsubjpass RNA,isolated
R10708 T13624 T13625 auxpass was,isolated
R10709 T13625 T13625 ROOT isolated,isolated
R10710 T13626 T13625 advcl using,isolated
R10711 T13627 T13626 dobj Trizol,using
R10712 T13628 T13629 punct (,Invitrogen
R10713 T13629 T13627 appos Invitrogen,Trizol
R10714 T13630 T13629 punct ),Invitrogen
R10715 T13631 T13627 punct ",",Trizol
R10716 T13632 T13627 cc and,Trizol
R10717 T13633 T13627 conj reverse-transcribed,Trizol
R10718 T13634 T13633 punct (,reverse-transcribed
R10719 T13635 T13636 compound Superscript,III
R10720 T13636 T13637 compound III,kit
R10721 T13637 T13633 appos kit,reverse-transcribed
R10722 T13638 T13637 punct ",",kit
R10723 T13639 T13637 appos Invitrogen,kit
R10724 T13640 T13633 punct ),reverse-transcribed
R10725 T13641 T13625 punct .,isolated
R10726 T13642 T13643 compound Quantitative,PCR
R10727 T13643 T13649 nsubjpass PCR,performed
R10728 T13644 T13643 prep for,PCR
R10729 T13645 T13644 pobj GLε,for
R10730 T13646 T13645 cc and,GLε
R10731 T13647 T13645 conj Hprt1,GLε
R10732 T13648 T13649 auxpass was,performed
R10733 T13649 T13649 ROOT performed,performed
R10734 T13650 T13649 advcl using,performed
R10735 T13651 T13654 compound SYBR,mix
R10736 T13652 T13654 compound GREEN,mix
R10737 T13653 T13654 compound master,mix
R10738 T13654 T13650 dobj mix,using
R10739 T13655 T13657 punct (,Biosystems
R10740 T13656 T13657 compound Applied,Biosystems
R10741 T13657 T13654 appos Biosystems,mix
R10742 T13658 T13654 punct ),mix
R10743 T13659 T13649 punct ",",performed
R10744 T13660 T13649 cc and,performed
R10745 T13661 T13668 det an,instrument
R10746 T13662 T13665 compound Applied,Fast
R10747 T13663 T13665 compound Biosystems,Fast
R10748 T13664 T13665 compound 7900HT,Fast
R10749 T13665 T13667 compound Fast,PCR
R10750 T13666 T13667 compound Real-Time,PCR
R10751 T13667 T13668 compound PCR,instrument
R10752 T13668 T13649 conj instrument,performed
R10753 T13669 T13649 punct .,performed
R10754 T13670 T13676 nsubj Expression,was
R10755 T13671 T13670 prep of,Expression
R10756 T13672 T13671 pobj GLε,of
R10757 T13673 T13670 prep in,Expression
R10758 T13674 T13675 det each,sample
R10759 T13675 T13673 pobj sample,in
R10760 T13676 T13676 ROOT was,was
R10761 T13677 T13676 acomp normalized,was
R10762 T13678 T13677 prep to,normalized
R10763 T13679 T13680 det the,expression
R10764 T13680 T13678 pobj expression,to
R10765 T13681 T13680 prep of,expression
R10766 T13682 T13681 pobj Hprt1,of
R10767 T13683 T13676 punct .,was

GO-BP

Id Subject Object Predicate Lexical cue
T13803 58-71 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T13804 177-185 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T13805 219-227 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T13806 260-264 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4

GO-CC

Id Subject Object Predicate Lexical cue
T13807 130-135 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T13808 177-185 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T13809 219-227 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T13810 177-185 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T13811 219-227 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T13563 0-20 Sentence denotes GLε transcript assay
T13564 21-114 Sentence denotes The CD40-simulated activation of GLε transcription was evaluated as previously reported [33].
T13565 115-282 Sentence denotes Briefly, 1×106 cells were stimulated overnight with anti-CD40 antibody (10 µg/ml) or an isotype control antibody, with or without 500 U/ml mouse IL-4 (BD Biosciences).
T13566 283-385 Sentence denotes RNA was isolated using Trizol (Invitrogen), and reverse-transcribed (Superscript III kit, Invitrogen).
T13567 386-548 Sentence denotes Quantitative PCR for GLε and Hprt1 was performed using SYBR GREEN master mix (Applied Biosystems), and an Applied Biosystems 7900HT Fast Real-Time PCR instrument.
T13568 549-624 Sentence denotes Expression of GLε in each sample was normalized to the expression of Hprt1.
T216 0-20 Sentence denotes GLε transcript assay
T217 21-114 Sentence denotes The CD40-simulated activation of GLε transcription was evaluated as previously reported [33].
T218 115-282 Sentence denotes Briefly, 1×106 cells were stimulated overnight with anti-CD40 antibody (10 µg/ml) or an isotype control antibody, with or without 500 U/ml mouse IL-4 (BD Biosciences).
T219 283-385 Sentence denotes RNA was isolated using Trizol (Invitrogen), and reverse-transcribed (Superscript III kit, Invitrogen).
T220 386-548 Sentence denotes Quantitative PCR for GLε and Hprt1 was performed using SYBR GREEN master mix (Applied Biosystems), and an Applied Biosystems 7900HT Fast Real-Time PCR instrument.
T221 549-624 Sentence denotes Expression of GLε in each sample was normalized to the expression of Hprt1.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13790 0-3 Q28322 denotes GLε
T13791 25-29 P25942 denotes CD40
T13792 54-57 Q28322 denotes GLε
T13793 172-176 P25942 denotes CD40
T13794 260-264 P05112 denotes IL-4
T13795 407-410 Q28322 denotes GLε
T13796 563-566 Q28322 denotes GLε

test2

Id Subject Object Predicate Lexical cue Speculation
T13538 0-3 Protein denotes GLε true
T13539 25-29 Protein denotes CD40
T13540 40-50 Positive_regulation denotes activation
T13541 54-57 Protein denotes GLε
T13542 58-71 Transcription denotes transcription
T13543 260-264 Protein denotes IL-4
T13544 407-410 Protein denotes GLε
T13545 415-420 Protein denotes Hprt1
T13546 549-559 Gene_expression denotes Expression
T13547 563-566 Protein denotes GLε
T13548 604-614 Gene_expression denotes expression
T13549 618-623 Protein denotes Hprt1
R10642 T13539 T13540 causeOf CD40,activation
R10643 T13541 T13542 themeOf GLε,transcription
R10644 T13542 T13540 themeOf transcription,activation
R10645 T13547 T13546 themeOf GLε,Expression
R10646 T13549 T13548 themeOf Hprt1,expression