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PMC:3148254 / 27709-27951 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T11918 200-210 Gene_expression denotes expressing
T11919 211-216 Protein denotes CD154
R9245 T11919 T11918 themeOf CD154,expressing

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T12050 211-216 Protein denotes CD154
T12051 200-210 Gene_expression denotes expressing
R9362 T12050 T12051 themeOf CD154,expressing

events-check-again

Id Subject Object Predicate Lexical cue
T12052 200-210 Gene_expression denotes expressing
T12053 211-216 Protein denotes CD154
R9363 T12053 T12052 themeOf CD154,expressing

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11983 0-4 NN denotes Cell
T11984 5-10 NN denotes lines
T11985 11-14 DT denotes The
T11986 15-20 NN denotes mouse
T11987 21-22 NN denotes B
T11988 23-27 NN denotes cell
T11989 28-32 NN denotes line
T11990 33-39 NN denotes A20.2J
T11991 40-43 VB denotes has
T11992 44-48 VB denotes been
T11993 49-59 RB denotes previously
T11994 60-69 VB denotes described
T11995 70-71 -LRB- denotes [
T11996 71-73 CD denotes 26
T11997 73-74 -RRB- denotes ]
T11998 74-75 -COMMA- denotes ,
T11999 76-77 -LRB- denotes [
T12000 77-79 CD denotes 27
T12001 79-80 -RRB- denotes ]
T12002 82-87 NN denotes Cells
T12003 88-92 VB denotes were
T12004 93-98 VB denotes grown
T12005 99-101 IN denotes in
T12006 102-106 NN denotes RPMI
T12007 107-111 CD denotes 1640
T12008 111-112 -COMMA- denotes ,
T12009 113-115 CD denotes 10
T12010 115-116 NN denotes %
T12011 117-120 NN denotes FCS
T12012 120-121 -COMMA- denotes ,
T12013 122-124 CD denotes 10
T12014 125-127 NN denotes µM
T12015 128-132 NN denotes 2-ME
T12016 132-133 -COMMA- denotes ,
T12017 134-135 CD denotes 2
T12018 136-138 NN denotes mM
T12019 139-150 NN denotes L-glutamine
T12020 150-151 -COMMA- denotes ,
T12021 152-155 CC denotes and
T12022 156-167 NN denotes antibiotics
T12023 169-173 NN denotes HI-5
T12024 174-180 NN denotes insect
T12025 181-186 NN denotes cells
T12026 187-188 -LRB- denotes (
T12027 188-198 NN denotes Invitrogen
T12028 198-199 -RRB- denotes )
T12029 200-210 VB denotes expressing
T12030 211-216 NN denotes CD154
T12031 217-221 VB denotes have
T12032 222-226 VB denotes been
T12033 227-236 VB denotes described
T12034 237-238 -LRB- denotes [
T12035 238-240 CD denotes 28
T12036 240-241 -RRB- denotes ]
R9305 T11984 T11983 arg1Of lines,Cell
R9306 T11990 T11985 arg1Of A20.2J,The
R9307 T11990 T11986 arg1Of A20.2J,mouse
R9308 T11990 T11987 arg1Of A20.2J,B
R9309 T11990 T11988 arg1Of A20.2J,cell
R9310 T11990 T11989 arg1Of A20.2J,line
R9311 T11990 T11991 arg1Of A20.2J,has
R9312 T11990 T11992 arg1Of A20.2J,been
R9313 T11990 T11994 arg2Of A20.2J,described
R9314 T11994 T11991 arg2Of described,has
R9315 T11994 T11992 arg2Of described,been
R9316 T11994 T11993 arg1Of described,previously
R9317 T11994 T11995 arg1Of described,[
R9318 T11994 T11998 arg1Of described,","
R9319 T11994 T11999 arg1Of described,[
R9320 T11996 T11995 arg2Of 26,[
R9321 T11997 T11995 arg3Of ],[
R9322 T12000 T11999 arg2Of 27,[
R9323 T12001 T11999 arg3Of ],[
R9324 T12002 T12003 arg1Of Cells,were
R9325 T12002 T12004 arg2Of Cells,grown
R9326 T12004 T12003 arg2Of grown,were
R9327 T12004 T12005 arg1Of grown,in
R9328 T12006 T12007 arg1Of RPMI,1640
R9329 T12006 T12008 arg1Of RPMI,","
R9330 T12008 T12012 arg1Of ",",","
R9331 T12009 T12010 arg1Of 10,%
R9332 T12011 T12008 arg2Of FCS,","
R9333 T12011 T12009 arg1Of FCS,10
R9334 T12012 T12016 arg1Of ",",","
R9335 T12015 T12012 arg2Of 2-ME,","
R9336 T12015 T12013 arg1Of 2-ME,10
R9337 T12015 T12014 arg1Of 2-ME,µM
R9338 T12016 T12021 arg1Of ",",and
R9339 T12017 T12018 arg1Of 2,mM
R9340 T12019 T12016 arg2Of L-glutamine,","
R9341 T12019 T12017 arg1Of L-glutamine,2
R9342 T12021 T12005 arg2Of and,in
R9343 T12021 T12020 arg1Of and,","
R9344 T12022 T12021 arg2Of antibiotics,and
R9345 T12025 T12023 arg1Of cells,HI-5
R9346 T12025 T12024 arg1Of cells,insect
R9347 T12025 T12026 arg1Of cells,(
R9348 T12025 T12029 arg1Of cells,expressing
R9349 T12025 T12031 arg1Of cells,have
R9350 T12025 T12032 arg1Of cells,been
R9351 T12025 T12033 arg2Of cells,described
R9352 T12027 T12026 arg2Of Invitrogen,(
R9353 T12028 T12026 arg3Of ),(
R9354 T12030 T12029 arg2Of CD154,expressing
R9355 T12033 T12031 arg2Of described,have
R9356 T12033 T12032 arg2Of described,been
R9357 T12033 T12034 arg1Of described,[
R9358 T12035 T12034 arg2Of 28,[
R9359 T12036 T12034 arg3Of ],[

2_test

Id Subject Object Predicate Lexical cue
21829693-310843-89653795 71-73 310843 denotes 26
21829693-6605987-89653796 77-79 6605987 denotes 27
21829693-8757608-89653797 238-240 8757608 denotes 28
T69278 71-73 310843 denotes 26
T93730 77-79 6605987 denotes 27
T91735 238-240 8757608 denotes 28

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11924 0-4 NN denotes Cell
T11925 5-10 NNS denotes lines
T11926 11-14 DT denotes The
T11927 15-20 NN denotes mouse
T11928 21-22 NNP denotes B
T11929 23-27 NN denotes cell
T11930 28-32 NN denotes line
T11931 33-36 NNP denotes A20
T11932 36-38 CD denotes .2
T11933 38-39 NNP denotes J
T11934 40-43 VBZ denotes has
T11935 44-48 VBN denotes been
T11936 49-59 RB denotes previously
T11937 60-69 VBN denotes described
T11938 70-71 NNP denotes [
T11939 71-73 CD denotes 26
T11940 73-74 NNP denotes ]
T11941 74-75 , denotes ,
T11942 76-77 NNP denotes [
T11943 77-79 CD denotes 27
T11944 79-80 NNP denotes ]
T11945 80-81 . denotes .
T11946 82-87 NNS denotes Cells
T11947 88-92 VBD denotes were
T11948 93-98 VBN denotes grown
T11949 99-101 IN denotes in
T11950 102-106 NNP denotes RPMI
T11951 107-111 CD denotes 1640
T11952 111-112 , denotes ,
T11953 113-115 CD denotes 10
T11954 115-116 NN denotes %
T11955 117-120 NNP denotes FCS
T11956 120-121 , denotes ,
T11957 122-124 CD denotes 10
T11958 125-127 NNP denotes µM
T11959 128-132 NNP denotes 2-ME
T11960 132-133 , denotes ,
T11961 134-135 CD denotes 2
T11962 136-138 NNP denotes mM
T11963 139-150 NNP denotes L-glutamine
T11964 150-151 , denotes ,
T11965 152-155 CC denotes and
T11966 156-167 NNS denotes antibiotics
T11967 167-168 . denotes .
T11968 169-173 CD denotes HI-5
T11969 174-180 JJ denotes insect
T11970 181-186 NNS denotes cells
T11971 187-188 -LRB- denotes (
T11972 188-198 NNP denotes Invitrogen
T11973 198-199 -RRB- denotes )
T11974 200-210 VBG denotes expressing
T11975 211-216 CD denotes CD154
T11976 217-221 VBP denotes have
T11977 222-226 VBN denotes been
T11978 227-236 VBN denotes described
T11979 237-238 NNP denotes [
T11980 238-240 CD denotes 28
T11981 240-241 NNP denotes ]
T11982 241-242 . denotes .
R9246 T11924 T11925 compound Cell,lines
R9247 T11925 T11937 nsubjpass lines,described
R9248 T11926 T11930 det The,line
R9249 T11927 T11929 compound mouse,cell
R9250 T11928 T11929 compound B,cell
R9251 T11929 T11930 compound cell,line
R9252 T11930 T11937 nsubjpass line,described
R9253 T11931 T11933 compound A20,J
R9254 T11932 T11933 compound .2,J
R9255 T11933 T11930 appos J,line
R9256 T11934 T11937 aux has,described
R9257 T11935 T11937 auxpass been,described
R9258 T11936 T11937 advmod previously,described
R9259 T11937 T11937 ROOT described,described
R9260 T11938 T11940 nmod [,]
R9261 T11939 T11940 nummod 26,]
R9262 T11940 T11937 dobj ],described
R9263 T11941 T11940 punct ",",]
R9264 T11942 T11944 nmod [,]
R9265 T11943 T11944 nummod 27,]
R9266 T11944 T11940 appos ],]
R9267 T11945 T11937 punct .,described
R9268 T11946 T11948 nsubjpass Cells,grown
R9269 T11947 T11948 auxpass were,grown
R9270 T11948 T11948 ROOT grown,grown
R9271 T11949 T11948 prep in,grown
R9272 T11950 T11949 pobj RPMI,in
R9273 T11951 T11950 nummod 1640,RPMI
R9274 T11952 T11950 punct ",",RPMI
R9275 T11953 T11954 nummod 10,%
R9276 T11954 T11955 npadvmod %,FCS
R9277 T11955 T11950 appos FCS,RPMI
R9278 T11956 T11955 punct ",",FCS
R9279 T11957 T11959 nummod 10,2-ME
R9280 T11958 T11959 compound µM,2-ME
R9281 T11959 T11955 appos 2-ME,FCS
R9282 T11960 T11955 punct ",",FCS
R9283 T11961 T11963 nummod 2,L-glutamine
R9284 T11962 T11963 compound mM,L-glutamine
R9285 T11963 T11955 appos L-glutamine,FCS
R9286 T11964 T11963 punct ",",L-glutamine
R9287 T11965 T11963 cc and,L-glutamine
R9288 T11966 T11955 appos antibiotics,FCS
R9289 T11967 T11948 punct .,grown
R9290 T11968 T11970 nummod HI-5,cells
R9291 T11969 T11970 compound insect,cells
R9292 T11970 T11978 nsubjpass cells,described
R9293 T11971 T11972 punct (,Invitrogen
R9294 T11972 T11970 appos Invitrogen,cells
R9295 T11973 T11970 punct ),cells
R9296 T11974 T11970 acl expressing,cells
R9297 T11975 T11974 dobj CD154,expressing
R9298 T11976 T11978 aux have,described
R9299 T11977 T11978 auxpass been,described
R9300 T11978 T11978 ROOT described,described
R9301 T11979 T11978 dobj [,described
R9302 T11980 T11981 nummod 28,]
R9303 T11981 T11979 appos ],[
R9304 T11982 T11978 punct .,described

GO-CC

Id Subject Object Predicate Lexical cue
T12043 0-4 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T12044 23-27 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T12045 181-186 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11920 0-10 Sentence denotes Cell lines
T11921 11-81 Sentence denotes The mouse B cell line A20.2J has been previously described [26], [27].
T11922 82-168 Sentence denotes Cells were grown in RPMI 1640, 10% FCS, 10 µM 2-ME, 2 mM L-glutamine, and antibiotics.
T11923 169-242 Sentence denotes HI-5 insect cells (Invitrogen) expressing CD154 have been described [28].
T181 0-10 Sentence denotes Cell lines
T182 11-81 Sentence denotes The mouse B cell line A20.2J has been previously described [26], [27].
T183 82-168 Sentence denotes Cells were grown in RPMI 1640, 10% FCS, 10 µM 2-ME, 2 mM L-glutamine, and antibiotics.
T184 169-242 Sentence denotes HI-5 insect cells (Invitrogen) expressing CD154 have been described [28].

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12037 33-36 P21580 denotes A20
T12038 211-216 P29965 denotes CD154

test2

Id Subject Object Predicate Lexical cue
T11916 200-210 Gene_expression denotes expressing
T11917 211-216 Protein denotes CD154
R9244 T11917 T11916 themeOf CD154,expressing