PMC:3148254 / 2732-2927 JSONTXT

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    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1125","span":{"begin":71,"end":76},"obj":"Protein"},{"id":"T1126","span":{"begin":78,"end":83},"obj":"Protein"},{"id":"T1127","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T1128","span":{"begin":96,"end":101},"obj":"Protein"},{"id":"T1129","span":{"begin":176,"end":180},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2574","span":{"begin":15,"end":45},"obj":"Protein"},{"id":"T2575","span":{"begin":47,"end":51},"obj":"Protein"},{"id":"T2576","span":{"begin":71,"end":76},"obj":"Protein"},{"id":"T2577","span":{"begin":78,"end":83},"obj":"Protein"},{"id":"T2578","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T2579","span":{"begin":96,"end":101},"obj":"Protein"},{"id":"T2580","span":{"begin":176,"end":180},"obj":"Protein"},{"id":"T2581","span":{"begin":53,"end":59},"obj":"Entity"},{"id":"T2582","span":{"begin":129,"end":138},"obj":"Regulation"},{"id":"T2583","span":{"begin":129,"end":138},"obj":"Regulation"},{"id":"T2584","span":{"begin":129,"end":138},"obj":"Regulation"},{"id":"T2585","span":{"begin":129,"end":138},"obj":"Regulation"},{"id":"T2586","span":{"begin":129,"end":138},"obj":"Regulation"},{"id":"T2587","span":{"begin":129,"end":138},"obj":"Regulation"},{"id":"T2588","span":{"begin":129,"end":138},"obj":"Regulation"},{"id":"T2589","span":{"begin":129,"end":138},"obj":"Regulation"}],"relations":[{"id":"R1955","pred":"themeOf","subj":"T2574","obj":"T2582"},{"id":"R1957","pred":"themeOf","subj":"T2574","obj":"T2584"},{"id":"R1958","pred":"themeOf","subj":"T2574","obj":"T2586"},{"id":"R1959","pred":"themeOf","subj":"T2574","obj":"T2588"},{"id":"R1960","pred":"partOf","subj":"T2574","obj":"T2581"},{"id":"R1961","pred":"themeOf","subj":"T2575","obj":"T2583"},{"id":"R1962","pred":"themeOf","subj":"T2575","obj":"T2585"},{"id":"R1963","pred":"themeOf","subj":"T2575","obj":"T2587"},{"id":"R1964","pred":"themeOf","subj":"T2575","obj":"T2589"},{"id":"R1965","pred":"partOf","subj":"T2575","obj":"T2581"},{"id":"R1967","pred":"causeOf","subj":"T2576","obj":"T2582"},{"id":"R1971","pred":"causeOf","subj":"T2576","obj":"T2583"},{"id":"R1972","pred":"causeOf","subj":"T2577","obj":"T2584"},{"id":"R1973","pred":"causeOf","subj":"T2577","obj":"T2585"},{"id":"R1974","pred":"causeOf","subj":"T2578","obj":"T2586"},{"id":"R1975","pred":"causeOf","subj":"T2578","obj":"T2587"},{"id":"R1976","pred":"causeOf","subj":"T2579","obj":"T2588"},{"id":"R1978","pred":"causeOf","subj":"T2579","obj":"T2589"},{"id":"R1980","pred":"Site","subj":"T2581","obj":"T2582"},{"id":"R1981","pred":"Site","subj":"T2581","obj":"T2583"},{"id":"R1984","pred":"Site","subj":"T2581","obj":"T2584"},{"id":"R1986","pred":"Site","subj":"T2581","obj":"T2585"},{"id":"R1987","pred":"Site","subj":"T2581","obj":"T2586"},{"id":"R1988","pred":"Site","subj":"T2581","obj":"T2587"},{"id":"R1989","pred":"Site","subj":"T2581","obj":"T2588"},{"id":"R1990","pred":"Site","subj":"T2581","obj":"T2589"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T2654","span":{"begin":71,"end":76},"obj":"Protein"},{"id":"T2655","span":{"begin":78,"end":83},"obj":"Protein"},{"id":"T2656","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T2657","span":{"begin":96,"end":101},"obj":"Protein"},{"id":"T2658","span":{"begin":176,"end":180},"obj":"Protein"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T2237","span":{"begin":85,"end":90},"obj":"Antecedent"},{"id":"T2238","span":{"begin":96,"end":101},"obj":"Antecedent"},{"id":"T2235","span":{"begin":71,"end":76},"obj":"Antecedent"},{"id":"T2236","span":{"begin":78,"end":83},"obj":"Antecedent"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T1865","span":{"begin":0,"end":7},"obj":"NN"},{"id":"T1866","span":{"begin":8,"end":10},"obj":"IN"},{"id":"T1867","span":{"begin":11,"end":14},"obj":"DT"},{"id":"T1868","span":{"begin":15,"end":18},"obj":"NN"},{"id":"T1869","span":{"begin":19,"end":38},"obj":"JJ"},{"id":"T1870","span":{"begin":39,"end":45},"obj":"NN"},{"id":"T1871","span":{"begin":46,"end":47},"obj":"-LRB-"},{"id":"T1872","span":{"begin":47,"end":51},"obj":"NN"},{"id":"T1873","span":{"begin":51,"end":52},"obj":"-RRB-"},{"id":"T1874","span":{"begin":53,"end":59},"obj":"NN"},{"id":"T1875","span":{"begin":59,"end":60},"obj":"-COMMA-"},{"id":"T1876","span":{"begin":61,"end":70},"obj":"VB"},{"id":"T1877","span":{"begin":71,"end":76},"obj":"NN"},{"id":"T1878","span":{"begin":76,"end":77},"obj":"-COMMA-"},{"id":"T1879","span":{"begin":78,"end":83},"obj":"NN"},{"id":"T1880","span":{"begin":83,"end":84},"obj":"-COMMA-"},{"id":"T1881","span":{"begin":85,"end":90},"obj":"NN"},{"id":"T1882","span":{"begin":90,"end":91},"obj":"-COMMA-"},{"id":"T1883","span":{"begin":92,"end":95},"obj":"CC"},{"id":"T1884","span":{"begin":96,"end":101},"obj":"NN"},{"id":"T1885","span":{"begin":101,"end":102},"obj":"-COMMA-"},{"id":"T1886","span":{"begin":103,"end":109},"obj":"VB"},{"id":"T1887","span":{"begin":110,"end":112},"obj":"TO"},{"id":"T1888","span":{"begin":113,"end":115},"obj":"VB"},{"id":"T1889","span":{"begin":116,"end":128},"obj":"RB"},{"id":"T1890","span":{"begin":129,"end":138},"obj":"JJ"},{"id":"T1891","span":{"begin":139,"end":142},"obj":"IN"},{"id":"T1892","span":{"begin":143,"end":146},"obj":"DT"},{"id":"T1893","span":{"begin":147,"end":157},"obj":"NN"},{"id":"T1894","span":{"begin":158,"end":161},"obj":"CC"},{"id":"T1895","span":{"begin":162,"end":172},"obj":"NN"},{"id":"T1896","span":{"begin":173,"end":175},"obj":"IN"},{"id":"T1897","span":{"begin":176,"end":180},"obj":"NN"},{"id":"T1898","span":{"begin":181,"end":190},"obj":"NN"},{"id":"T1899","span":{"begin":191,"end":192},"obj":"-LRB-"},{"id":"T1900","span":{"begin":192,"end":193},"obj":"CD"},{"id":"T1901","span":{"begin":193,"end":194},"obj":"-RRB-"}],"relations":[{"id":"R1489","pred":"arg1Of","subj":"T1865","obj":"T1866"},{"id":"R1490","pred":"arg1Of","subj":"T1865","obj":"T1875"},{"id":"R1491","pred":"arg1Of","subj":"T1865","obj":"T1876"},{"id":"R1492","pred":"arg1Of","subj":"T1865","obj":"T1886"},{"id":"R1493","pred":"arg1Of","subj":"T1865","obj":"T1888"},{"id":"R1494","pred":"arg2Of","subj":"T1900","obj":"T1899"},{"id":"R1495","pred":"arg1Of","subj":"T1865","obj":"T1890"},{"id":"R1496","pred":"arg2Of","subj":"T1872","obj":"T1871"},{"id":"R1497","pred":"arg3Of","subj":"T1901","obj":"T1899"},{"id":"R1512","pred":"arg3Of","subj":"T1873","obj":"T1871"},{"id":"R1513","pred":"arg2Of","subj":"T1874","obj":"T1866"},{"id":"R1520","pred":"arg1Of","subj":"T1874","obj":"T1867"},{"id":"R1524","pred":"arg1Of","subj":"T1874","obj":"T1868"},{"id":"R1525","pred":"arg1Of","subj":"T1874","obj":"T1869"},{"id":"R1526","pred":"arg1Of","subj":"T1874","obj":"T1870"},{"id":"R1530","pred":"arg1Of","subj":"T1874","obj":"T1871"},{"id":"R1531","pred":"arg1Of","subj":"T1877","obj":"T1878"},{"id":"R1539","pred":"arg1Of","subj":"T1878","obj":"T1880"},{"id":"R1544","pred":"arg2Of","subj":"T1879","obj":"T1878"},{"id":"R1545","pred":"arg1Of","subj":"T1880","obj":"T1883"},{"id":"R1546","pred":"arg2Of","subj":"T1881","obj":"T1880"},{"id":"R1551","pred":"arg2Of","subj":"T1883","obj":"T1876"},{"id":"R1556","pred":"arg1Of","subj":"T1883","obj":"T1882"},{"id":"R1560","pred":"arg2Of","subj":"T1884","obj":"T1883"},{"id":"R1561","pred":"arg1Of","subj":"T1886","obj":"T1885"},{"id":"R1571","pred":"arg1Of","subj":"T1886","obj":"T1899"},{"id":"R1578","pred":"arg2Of","subj":"T1888","obj":"T1886"},{"id":"R1584","pred":"arg1Of","subj":"T1888","obj":"T1887"},{"id":"R1585","pred":"arg2Of","subj":"T1890","obj":"T1888"},{"id":"R1588","pred":"arg1Of","subj":"T1890","obj":"T1889"},{"id":"R1591","pred":"arg1Of","subj":"T1890","obj":"T1891"},{"id":"R1592","pred":"arg1Of","subj":"T1893","obj":"T1894"},{"id":"R1600","pred":"arg2Of","subj":"T1894","obj":"T1891"},{"id":"R1604","pred":"arg1Of","subj":"T1894","obj":"T1892"},{"id":"R1605","pred":"arg1Of","subj":"T1894","obj":"T1896"},{"id":"R1607","pred":"arg2Of","subj":"T1895","obj":"T1894"},{"id":"R1608","pred":"arg2Of","subj":"T1898","obj":"T1896"},{"id":"R1623","pred":"arg1Of","subj":"T1898","obj":"T1897"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    2_test

    {"project":"2_test","denotations":[{"id":"21829693-17633023-89653751","span":{"begin":192,"end":193},"obj":"17633023"},{"id":"T36519","span":{"begin":192,"end":193},"obj":"17633023"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1344","span":{"begin":0,"end":7},"obj":"NNS"},{"id":"T1345","span":{"begin":8,"end":10},"obj":"IN"},{"id":"T1346","span":{"begin":11,"end":14},"obj":"DT"},{"id":"T1347","span":{"begin":15,"end":18},"obj":"NNP"},{"id":"T1348","span":{"begin":19,"end":38},"obj":"JJ"},{"id":"T1349","span":{"begin":39,"end":45},"obj":"NN"},{"id":"T1350","span":{"begin":46,"end":47},"obj":"-LRB-"},{"id":"T1351","span":{"begin":47,"end":51},"obj":"NNP"},{"id":"T1352","span":{"begin":51,"end":52},"obj":"-RRB-"},{"id":"T1353","span":{"begin":53,"end":59},"obj":"NN"},{"id":"T1354","span":{"begin":59,"end":60},"obj":","},{"id":"T1355","span":{"begin":61,"end":70},"obj":"VBG"},{"id":"T1356","span":{"begin":71,"end":76},"obj":"CD"},{"id":"T1357","span":{"begin":76,"end":77},"obj":","},{"id":"T1358","span":{"begin":78,"end":83},"obj":"CD"},{"id":"T1359","span":{"begin":83,"end":84},"obj":","},{"id":"T1360","span":{"begin":85,"end":90},"obj":"CD"},{"id":"T1361","span":{"begin":90,"end":91},"obj":","},{"id":"T1362","span":{"begin":92,"end":95},"obj":"CC"},{"id":"T1363","span":{"begin":96,"end":101},"obj":"NNP"},{"id":"T1364","span":{"begin":101,"end":102},"obj":","},{"id":"T1365","span":{"begin":103,"end":109},"obj":"VBP"},{"id":"T1366","span":{"begin":110,"end":112},"obj":"TO"},{"id":"T1367","span":{"begin":113,"end":115},"obj":"VB"},{"id":"T1368","span":{"begin":116,"end":128},"obj":"RB"},{"id":"T1369","span":{"begin":129,"end":138},"obj":"JJ"},{"id":"T1370","span":{"begin":139,"end":142},"obj":"IN"},{"id":"T1371","span":{"begin":143,"end":146},"obj":"DT"},{"id":"T1372","span":{"begin":147,"end":157},"obj":"NN"},{"id":"T1373","span":{"begin":158,"end":161},"obj":"CC"},{"id":"T1374","span":{"begin":162,"end":172},"obj":"NN"},{"id":"T1375","span":{"begin":173,"end":175},"obj":"IN"},{"id":"T1376","span":{"begin":176,"end":180},"obj":"NNP"},{"id":"T1377","span":{"begin":181,"end":190},"obj":"VBG"},{"id":"T1378","span":{"begin":191,"end":192},"obj":"NNP"},{"id":"T1379","span":{"begin":192,"end":193},"obj":"CD"},{"id":"T1380","span":{"begin":193,"end":194},"obj":"NNP"},{"id":"T1381","span":{"begin":194,"end":195},"obj":"."}],"relations":[{"id":"R962","pred":"nsubj","subj":"T1344","obj":"T1365"},{"id":"R963","pred":"prep","subj":"T1345","obj":"T1344"},{"id":"R964","pred":"det","subj":"T1346","obj":"T1349"},{"id":"R965","pred":"nmod","subj":"T1347","obj":"T1349"},{"id":"R966","pred":"amod","subj":"T1348","obj":"T1349"},{"id":"R967","pred":"pobj","subj":"T1349","obj":"T1345"},{"id":"R968","pred":"punct","subj":"T1350","obj":"T1349"},{"id":"R969","pred":"appos","subj":"T1351","obj":"T1349"},{"id":"R970","pred":"punct","subj":"T1352","obj":"T1351"},{"id":"R971","pred":"conj","subj":"T1353","obj":"T1349"},{"id":"R972","pred":"punct","subj":"T1354","obj":"T1353"},{"id":"R973","pred":"prep","subj":"T1355","obj":"T1344"},{"id":"R974","pred":"pobj","subj":"T1356","obj":"T1355"},{"id":"R975","pred":"punct","subj":"T1357","obj":"T1356"},{"id":"R976","pred":"appos","subj":"T1358","obj":"T1356"},{"id":"R977","pred":"punct","subj":"T1359","obj":"T1356"},{"id":"R978","pred":"appos","subj":"T1360","obj":"T1356"},{"id":"R979","pred":"punct","subj":"T1361","obj":"T1344"},{"id":"R980","pred":"cc","subj":"T1362","obj":"T1344"},{"id":"R981","pred":"nsubj","subj":"T1363","obj":"T1365"},{"id":"R982","pred":"punct","subj":"T1364","obj":"T1365"},{"id":"R983","pred":"ROOT","subj":"T1365","obj":"T1365"},{"id":"R984","pred":"aux","subj":"T1366","obj":"T1367"},{"id":"R985","pred":"xcomp","subj":"T1367","obj":"T1365"},{"id":"R986","pred":"advmod","subj":"T1368","obj":"T1369"},{"id":"R987","pred":"acomp","subj":"T1369","obj":"T1367"},{"id":"R988","pred":"prep","subj":"T1370","obj":"T1369"},{"id":"R989","pred":"det","subj":"T1371","obj":"T1372"},{"id":"R990","pred":"pobj","subj":"T1372","obj":"T1370"},{"id":"R991","pred":"cc","subj":"T1373","obj":"T1372"},{"id":"R992","pred":"conj","subj":"T1374","obj":"T1372"},{"id":"R993","pred":"prep","subj":"T1375","obj":"T1372"},{"id":"R994","pred":"pobj","subj":"T1376","obj":"T1375"},{"id":"R995","pred":"advcl","subj":"T1377","obj":"T1367"},{"id":"R996","pred":"nmod","subj":"T1378","obj":"T1380"},{"id":"R997","pred":"nummod","subj":"T1379","obj":"T1380"},{"id":"R998","pred":"dobj","subj":"T1380","obj":"T1377"},{"id":"R999","pred":"punct","subj":"T1381","obj":"T1365"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T2317","span":{"begin":181,"end":190},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T2344","span":{"begin":162,"end":172},"obj":"http://purl.obolibrary.org/obo/GO_0065007"},{"id":"T2346","span":{"begin":162,"end":190},"obj":"http://purl.obolibrary.org/obo/GO_2000348"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1187","span":{"begin":0,"end":195},"obj":"Sentence"},{"id":"T22","span":{"begin":0,"end":195},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2255","span":{"begin":15,"end":18},"obj":"P01375"},{"id":"T2256","span":{"begin":15,"end":45},"obj":"Q9Y4K3"},{"id":"T2257","span":{"begin":15,"end":45},"obj":"Q13114"},{"id":"T2258","span":{"begin":15,"end":45},"obj":"Q12933"},{"id":"T2259","span":{"begin":78,"end":83},"obj":"Q12933"},{"id":"T2260","span":{"begin":85,"end":90},"obj":"Q13114"},{"id":"T2261","span":{"begin":96,"end":101},"obj":"Q9Y4K3"},{"id":"T2262","span":{"begin":176,"end":180},"obj":"P25942"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}

    test2

    {"project":"test2","denotations":[{"id":"T1060","span":{"begin":71,"end":76},"obj":"Protein"},{"id":"T1061","span":{"begin":78,"end":83},"obj":"Protein"},{"id":"T1062","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T1063","span":{"begin":96,"end":101},"obj":"Protein"},{"id":"T1064","span":{"begin":176,"end":180},"obj":"Protein"}],"attributes":[{"id":"M3","pred":"Speculation","subj":"T1063","obj":"true"}],"text":"Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]."}