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PMC:3148254 / 2732-2927 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1125 71-76 Protein denotes TRAF1
T1126 78-83 Protein denotes TRAF2
T1127 85-90 Protein denotes TRAF3
T1128 96-101 Protein denotes TRAF6
T1129 176-180 Protein denotes CD40

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2574 15-45 Protein denotes TNF receptor-associated factor
T2575 47-51 Protein denotes TRAF
T2576 71-76 Protein denotes TRAF1
T2577 78-83 Protein denotes TRAF2
T2578 85-90 Protein denotes TRAF3
T2579 96-101 Protein denotes TRAF6
T2580 176-180 Protein denotes CD40
T2581 53-59 Entity denotes family
T2582 129-138 Regulation denotes important
T2583 129-138 Regulation denotes important
T2584 129-138 Regulation denotes important
T2585 129-138 Regulation denotes important
T2586 129-138 Regulation denotes important
T2587 129-138 Regulation denotes important
T2588 129-138 Regulation denotes important
T2589 129-138 Regulation denotes important
R1955 T2574 T2582 themeOf TNF receptor-associated factor,important
R1957 T2574 T2584 themeOf TNF receptor-associated factor,important
R1958 T2574 T2586 themeOf TNF receptor-associated factor,important
R1959 T2574 T2588 themeOf TNF receptor-associated factor,important
R1960 T2574 T2581 partOf TNF receptor-associated factor,family
R1961 T2575 T2583 themeOf TRAF,important
R1962 T2575 T2585 themeOf TRAF,important
R1963 T2575 T2587 themeOf TRAF,important
R1964 T2575 T2589 themeOf TRAF,important
R1965 T2575 T2581 partOf TRAF,family
R1967 T2576 T2582 causeOf TRAF1,important
R1971 T2576 T2583 causeOf TRAF1,important
R1972 T2577 T2584 causeOf TRAF2,important
R1973 T2577 T2585 causeOf TRAF2,important
R1974 T2578 T2586 causeOf TRAF3,important
R1975 T2578 T2587 causeOf TRAF3,important
R1976 T2579 T2588 causeOf TRAF6,important
R1978 T2579 T2589 causeOf TRAF6,important
R1980 T2581 T2582 Site family,important
R1981 T2581 T2583 Site family,important
R1984 T2581 T2584 Site family,important
R1986 T2581 T2585 Site family,important
R1987 T2581 T2586 Site family,important
R1988 T2581 T2587 Site family,important
R1989 T2581 T2588 Site family,important
R1990 T2581 T2589 Site family,important

events-check-again

Id Subject Object Predicate Lexical cue
T2654 71-76 Protein denotes TRAF1
T2655 78-83 Protein denotes TRAF2
T2656 85-90 Protein denotes TRAF3
T2657 96-101 Protein denotes TRAF6
T2658 176-180 Protein denotes CD40

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T2237 85-90 Antecedent denotes TRAF3
T2238 96-101 Antecedent denotes TRAF6
T2235 71-76 Antecedent denotes TRAF1
T2236 78-83 Antecedent denotes TRAF2

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1865 0-7 NN denotes Members
T1866 8-10 IN denotes of
T1867 11-14 DT denotes the
T1868 15-18 NN denotes TNF
T1869 19-38 JJ denotes receptor-associated
T1870 39-45 NN denotes factor
T1871 46-47 -LRB- denotes (
T1872 47-51 NN denotes TRAF
T1873 51-52 -RRB- denotes )
T1874 53-59 NN denotes family
T1875 59-60 -COMMA- denotes ,
T1876 61-70 VB denotes including
T1877 71-76 NN denotes TRAF1
T1878 76-77 -COMMA- denotes ,
T1879 78-83 NN denotes TRAF2
T1880 83-84 -COMMA- denotes ,
T1881 85-90 NN denotes TRAF3
T1882 90-91 -COMMA- denotes ,
T1883 92-95 CC denotes and
T1884 96-101 NN denotes TRAF6
T1885 101-102 -COMMA- denotes ,
T1886 103-109 VB denotes appear
T1887 110-112 TO denotes to
T1888 113-115 VB denotes be
T1889 116-128 RB denotes particularly
T1890 129-138 JJ denotes important
T1891 139-142 IN denotes for
T1892 143-146 DT denotes the
T1893 147-157 NN denotes initiation
T1894 158-161 CC denotes and
T1895 162-172 NN denotes regulation
T1896 173-175 IN denotes of
T1897 176-180 NN denotes CD40
T1898 181-190 NN denotes signaling
T1899 191-192 -LRB- denotes [
T1900 192-193 CD denotes 4
T1901 193-194 -RRB- denotes ]
R1489 T1865 T1866 arg1Of Members,of
R1490 T1865 T1875 arg1Of Members,","
R1491 T1865 T1876 arg1Of Members,including
R1492 T1865 T1886 arg1Of Members,appear
R1493 T1865 T1888 arg1Of Members,be
R1494 T1900 T1899 arg2Of 4,[
R1495 T1865 T1890 arg1Of Members,important
R1496 T1872 T1871 arg2Of TRAF,(
R1497 T1901 T1899 arg3Of ],[
R1512 T1873 T1871 arg3Of ),(
R1513 T1874 T1866 arg2Of family,of
R1520 T1874 T1867 arg1Of family,the
R1524 T1874 T1868 arg1Of family,TNF
R1525 T1874 T1869 arg1Of family,receptor-associated
R1526 T1874 T1870 arg1Of family,factor
R1530 T1874 T1871 arg1Of family,(
R1531 T1877 T1878 arg1Of TRAF1,","
R1539 T1878 T1880 arg1Of ",",","
R1544 T1879 T1878 arg2Of TRAF2,","
R1545 T1880 T1883 arg1Of ",",and
R1546 T1881 T1880 arg2Of TRAF3,","
R1551 T1883 T1876 arg2Of and,including
R1556 T1883 T1882 arg1Of and,","
R1560 T1884 T1883 arg2Of TRAF6,and
R1561 T1886 T1885 arg1Of appear,","
R1571 T1886 T1899 arg1Of appear,[
R1578 T1888 T1886 arg2Of be,appear
R1584 T1888 T1887 arg1Of be,to
R1585 T1890 T1888 arg2Of important,be
R1588 T1890 T1889 arg1Of important,particularly
R1591 T1890 T1891 arg1Of important,for
R1592 T1893 T1894 arg1Of initiation,and
R1600 T1894 T1891 arg2Of and,for
R1604 T1894 T1892 arg1Of and,the
R1605 T1894 T1896 arg1Of and,of
R1607 T1895 T1894 arg2Of regulation,and
R1608 T1898 T1896 arg2Of signaling,of
R1623 T1898 T1897 arg1Of signaling,CD40

2_test

Id Subject Object Predicate Lexical cue
21829693-17633023-89653751 192-193 17633023 denotes 4
T36519 192-193 17633023 denotes 4

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1344 0-7 NNS denotes Members
T1345 8-10 IN denotes of
T1346 11-14 DT denotes the
T1347 15-18 NNP denotes TNF
T1348 19-38 JJ denotes receptor-associated
T1349 39-45 NN denotes factor
T1350 46-47 -LRB- denotes (
T1351 47-51 NNP denotes TRAF
T1352 51-52 -RRB- denotes )
T1353 53-59 NN denotes family
T1354 59-60 , denotes ,
T1355 61-70 VBG denotes including
T1356 71-76 CD denotes TRAF1
T1357 76-77 , denotes ,
T1358 78-83 CD denotes TRAF2
T1359 83-84 , denotes ,
T1360 85-90 CD denotes TRAF3
T1361 90-91 , denotes ,
T1362 92-95 CC denotes and
T1363 96-101 NNP denotes TRAF6
T1364 101-102 , denotes ,
T1365 103-109 VBP denotes appear
T1366 110-112 TO denotes to
T1367 113-115 VB denotes be
T1368 116-128 RB denotes particularly
T1369 129-138 JJ denotes important
T1370 139-142 IN denotes for
T1371 143-146 DT denotes the
T1372 147-157 NN denotes initiation
T1373 158-161 CC denotes and
T1374 162-172 NN denotes regulation
T1375 173-175 IN denotes of
T1376 176-180 NNP denotes CD40
T1377 181-190 VBG denotes signaling
T1378 191-192 NNP denotes [
T1379 192-193 CD denotes 4
T1380 193-194 NNP denotes ]
T1381 194-195 . denotes .
R962 T1344 T1365 nsubj Members,appear
R963 T1345 T1344 prep of,Members
R964 T1346 T1349 det the,factor
R965 T1347 T1349 nmod TNF,factor
R966 T1348 T1349 amod receptor-associated,factor
R967 T1349 T1345 pobj factor,of
R968 T1350 T1349 punct (,factor
R969 T1351 T1349 appos TRAF,factor
R970 T1352 T1351 punct ),TRAF
R971 T1353 T1349 conj family,factor
R972 T1354 T1353 punct ",",family
R973 T1355 T1344 prep including,Members
R974 T1356 T1355 pobj TRAF1,including
R975 T1357 T1356 punct ",",TRAF1
R976 T1358 T1356 appos TRAF2,TRAF1
R977 T1359 T1356 punct ",",TRAF1
R978 T1360 T1356 appos TRAF3,TRAF1
R979 T1361 T1344 punct ",",Members
R980 T1362 T1344 cc and,Members
R981 T1363 T1365 nsubj TRAF6,appear
R982 T1364 T1365 punct ",",appear
R983 T1365 T1365 ROOT appear,appear
R984 T1366 T1367 aux to,be
R985 T1367 T1365 xcomp be,appear
R986 T1368 T1369 advmod particularly,important
R987 T1369 T1367 acomp important,be
R988 T1370 T1369 prep for,important
R989 T1371 T1372 det the,initiation
R990 T1372 T1370 pobj initiation,for
R991 T1373 T1372 cc and,initiation
R992 T1374 T1372 conj regulation,initiation
R993 T1375 T1372 prep of,initiation
R994 T1376 T1375 pobj CD40,of
R995 T1377 T1367 advcl signaling,be
R996 T1378 T1380 nmod [,]
R997 T1379 T1380 nummod 4,]
R998 T1380 T1377 dobj ],signaling
R999 T1381 T1365 punct .,appear

GO-BP

Id Subject Object Predicate Lexical cue
T2317 181-190 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T2344 162-172 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T2346 162-190 http://purl.obolibrary.org/obo/GO_2000348 denotes regulation of CD40 signaling

sentences

Id Subject Object Predicate Lexical cue
T1187 0-195 Sentence denotes Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4].
T22 0-195 Sentence denotes Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4].

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2255 15-18 P01375 denotes TNF
T2256 15-45 Q9Y4K3 denotes TNF receptor-associated factor
T2257 15-45 Q13114 denotes TNF receptor-associated factor
T2258 15-45 Q12933 denotes TNF receptor-associated factor
T2259 78-83 Q12933 denotes TRAF2
T2260 85-90 Q13114 denotes TRAF3
T2261 96-101 Q9Y4K3 denotes TRAF6
T2262 176-180 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue Speculation
T1060 71-76 Protein denotes TRAF1
T1061 78-83 Protein denotes TRAF2
T1062 85-90 Protein denotes TRAF3
T1063 96-101 Protein denotes TRAF6 true
T1064 176-180 Protein denotes CD40