PMC:3148254 / 2732-2927
Annnotations
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1125 | 71-76 | Protein | denotes | TRAF1 |
T1126 | 78-83 | Protein | denotes | TRAF2 |
T1127 | 85-90 | Protein | denotes | TRAF3 |
T1128 | 96-101 | Protein | denotes | TRAF6 |
T1129 | 176-180 | Protein | denotes | CD40 |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2574 | 15-45 | Protein | denotes | TNF receptor-associated factor |
T2575 | 47-51 | Protein | denotes | TRAF |
T2576 | 71-76 | Protein | denotes | TRAF1 |
T2577 | 78-83 | Protein | denotes | TRAF2 |
T2578 | 85-90 | Protein | denotes | TRAF3 |
T2579 | 96-101 | Protein | denotes | TRAF6 |
T2580 | 176-180 | Protein | denotes | CD40 |
T2581 | 53-59 | Entity | denotes | family |
T2582 | 129-138 | Regulation | denotes | important |
T2583 | 129-138 | Regulation | denotes | important |
T2584 | 129-138 | Regulation | denotes | important |
T2585 | 129-138 | Regulation | denotes | important |
T2586 | 129-138 | Regulation | denotes | important |
T2587 | 129-138 | Regulation | denotes | important |
T2588 | 129-138 | Regulation | denotes | important |
T2589 | 129-138 | Regulation | denotes | important |
R1955 | T2574 | T2582 | themeOf | TNF receptor-associated factor,important |
R1957 | T2574 | T2584 | themeOf | TNF receptor-associated factor,important |
R1958 | T2574 | T2586 | themeOf | TNF receptor-associated factor,important |
R1959 | T2574 | T2588 | themeOf | TNF receptor-associated factor,important |
R1960 | T2574 | T2581 | partOf | TNF receptor-associated factor,family |
R1961 | T2575 | T2583 | themeOf | TRAF,important |
R1962 | T2575 | T2585 | themeOf | TRAF,important |
R1963 | T2575 | T2587 | themeOf | TRAF,important |
R1964 | T2575 | T2589 | themeOf | TRAF,important |
R1965 | T2575 | T2581 | partOf | TRAF,family |
R1967 | T2576 | T2582 | causeOf | TRAF1,important |
R1971 | T2576 | T2583 | causeOf | TRAF1,important |
R1972 | T2577 | T2584 | causeOf | TRAF2,important |
R1973 | T2577 | T2585 | causeOf | TRAF2,important |
R1974 | T2578 | T2586 | causeOf | TRAF3,important |
R1975 | T2578 | T2587 | causeOf | TRAF3,important |
R1976 | T2579 | T2588 | causeOf | TRAF6,important |
R1978 | T2579 | T2589 | causeOf | TRAF6,important |
R1980 | T2581 | T2582 | Site | family,important |
R1981 | T2581 | T2583 | Site | family,important |
R1984 | T2581 | T2584 | Site | family,important |
R1986 | T2581 | T2585 | Site | family,important |
R1987 | T2581 | T2586 | Site | family,important |
R1988 | T2581 | T2587 | Site | family,important |
R1989 | T2581 | T2588 | Site | family,important |
R1990 | T2581 | T2589 | Site | family,important |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2654 | 71-76 | Protein | denotes | TRAF1 |
T2655 | 78-83 | Protein | denotes | TRAF2 |
T2656 | 85-90 | Protein | denotes | TRAF3 |
T2657 | 96-101 | Protein | denotes | TRAF6 |
T2658 | 176-180 | Protein | denotes | CD40 |
bionlp-st-ge-2016-coref
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2237 | 85-90 | Antecedent | denotes | TRAF3 |
T2238 | 96-101 | Antecedent | denotes | TRAF6 |
T2235 | 71-76 | Antecedent | denotes | TRAF1 |
T2236 | 78-83 | Antecedent | denotes | TRAF2 |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1865 | 0-7 | NN | denotes | Members |
T1866 | 8-10 | IN | denotes | of |
T1867 | 11-14 | DT | denotes | the |
T1868 | 15-18 | NN | denotes | TNF |
T1869 | 19-38 | JJ | denotes | receptor-associated |
T1870 | 39-45 | NN | denotes | factor |
T1871 | 46-47 | -LRB- | denotes | ( |
T1872 | 47-51 | NN | denotes | TRAF |
T1873 | 51-52 | -RRB- | denotes | ) |
T1874 | 53-59 | NN | denotes | family |
T1875 | 59-60 | -COMMA- | denotes | , |
T1876 | 61-70 | VB | denotes | including |
T1877 | 71-76 | NN | denotes | TRAF1 |
T1878 | 76-77 | -COMMA- | denotes | , |
T1879 | 78-83 | NN | denotes | TRAF2 |
T1880 | 83-84 | -COMMA- | denotes | , |
T1881 | 85-90 | NN | denotes | TRAF3 |
T1882 | 90-91 | -COMMA- | denotes | , |
T1883 | 92-95 | CC | denotes | and |
T1884 | 96-101 | NN | denotes | TRAF6 |
T1885 | 101-102 | -COMMA- | denotes | , |
T1886 | 103-109 | VB | denotes | appear |
T1887 | 110-112 | TO | denotes | to |
T1888 | 113-115 | VB | denotes | be |
T1889 | 116-128 | RB | denotes | particularly |
T1890 | 129-138 | JJ | denotes | important |
T1891 | 139-142 | IN | denotes | for |
T1892 | 143-146 | DT | denotes | the |
T1893 | 147-157 | NN | denotes | initiation |
T1894 | 158-161 | CC | denotes | and |
T1895 | 162-172 | NN | denotes | regulation |
T1896 | 173-175 | IN | denotes | of |
T1897 | 176-180 | NN | denotes | CD40 |
T1898 | 181-190 | NN | denotes | signaling |
T1899 | 191-192 | -LRB- | denotes | [ |
T1900 | 192-193 | CD | denotes | 4 |
T1901 | 193-194 | -RRB- | denotes | ] |
R1489 | T1865 | T1866 | arg1Of | Members,of |
R1490 | T1865 | T1875 | arg1Of | Members,"," |
R1491 | T1865 | T1876 | arg1Of | Members,including |
R1492 | T1865 | T1886 | arg1Of | Members,appear |
R1493 | T1865 | T1888 | arg1Of | Members,be |
R1494 | T1900 | T1899 | arg2Of | 4,[ |
R1495 | T1865 | T1890 | arg1Of | Members,important |
R1496 | T1872 | T1871 | arg2Of | TRAF,( |
R1497 | T1901 | T1899 | arg3Of | ],[ |
R1512 | T1873 | T1871 | arg3Of | ),( |
R1513 | T1874 | T1866 | arg2Of | family,of |
R1520 | T1874 | T1867 | arg1Of | family,the |
R1524 | T1874 | T1868 | arg1Of | family,TNF |
R1525 | T1874 | T1869 | arg1Of | family,receptor-associated |
R1526 | T1874 | T1870 | arg1Of | family,factor |
R1530 | T1874 | T1871 | arg1Of | family,( |
R1531 | T1877 | T1878 | arg1Of | TRAF1,"," |
R1539 | T1878 | T1880 | arg1Of | ",","," |
R1544 | T1879 | T1878 | arg2Of | TRAF2,"," |
R1545 | T1880 | T1883 | arg1Of | ",",and |
R1546 | T1881 | T1880 | arg2Of | TRAF3,"," |
R1551 | T1883 | T1876 | arg2Of | and,including |
R1556 | T1883 | T1882 | arg1Of | and,"," |
R1560 | T1884 | T1883 | arg2Of | TRAF6,and |
R1561 | T1886 | T1885 | arg1Of | appear,"," |
R1571 | T1886 | T1899 | arg1Of | appear,[ |
R1578 | T1888 | T1886 | arg2Of | be,appear |
R1584 | T1888 | T1887 | arg1Of | be,to |
R1585 | T1890 | T1888 | arg2Of | important,be |
R1588 | T1890 | T1889 | arg1Of | important,particularly |
R1591 | T1890 | T1891 | arg1Of | important,for |
R1592 | T1893 | T1894 | arg1Of | initiation,and |
R1600 | T1894 | T1891 | arg2Of | and,for |
R1604 | T1894 | T1892 | arg1Of | and,the |
R1605 | T1894 | T1896 | arg1Of | and,of |
R1607 | T1895 | T1894 | arg2Of | regulation,and |
R1608 | T1898 | T1896 | arg2Of | signaling,of |
R1623 | T1898 | T1897 | arg1Of | signaling,CD40 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
21829693-17633023-89653751 | 192-193 | 17633023 | denotes | 4 |
T36519 | 192-193 | 17633023 | denotes | 4 |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1344 | 0-7 | NNS | denotes | Members |
T1345 | 8-10 | IN | denotes | of |
T1346 | 11-14 | DT | denotes | the |
T1347 | 15-18 | NNP | denotes | TNF |
T1348 | 19-38 | JJ | denotes | receptor-associated |
T1349 | 39-45 | NN | denotes | factor |
T1350 | 46-47 | -LRB- | denotes | ( |
T1351 | 47-51 | NNP | denotes | TRAF |
T1352 | 51-52 | -RRB- | denotes | ) |
T1353 | 53-59 | NN | denotes | family |
T1354 | 59-60 | , | denotes | , |
T1355 | 61-70 | VBG | denotes | including |
T1356 | 71-76 | CD | denotes | TRAF1 |
T1357 | 76-77 | , | denotes | , |
T1358 | 78-83 | CD | denotes | TRAF2 |
T1359 | 83-84 | , | denotes | , |
T1360 | 85-90 | CD | denotes | TRAF3 |
T1361 | 90-91 | , | denotes | , |
T1362 | 92-95 | CC | denotes | and |
T1363 | 96-101 | NNP | denotes | TRAF6 |
T1364 | 101-102 | , | denotes | , |
T1365 | 103-109 | VBP | denotes | appear |
T1366 | 110-112 | TO | denotes | to |
T1367 | 113-115 | VB | denotes | be |
T1368 | 116-128 | RB | denotes | particularly |
T1369 | 129-138 | JJ | denotes | important |
T1370 | 139-142 | IN | denotes | for |
T1371 | 143-146 | DT | denotes | the |
T1372 | 147-157 | NN | denotes | initiation |
T1373 | 158-161 | CC | denotes | and |
T1374 | 162-172 | NN | denotes | regulation |
T1375 | 173-175 | IN | denotes | of |
T1376 | 176-180 | NNP | denotes | CD40 |
T1377 | 181-190 | VBG | denotes | signaling |
T1378 | 191-192 | NNP | denotes | [ |
T1379 | 192-193 | CD | denotes | 4 |
T1380 | 193-194 | NNP | denotes | ] |
T1381 | 194-195 | . | denotes | . |
R962 | T1344 | T1365 | nsubj | Members,appear |
R963 | T1345 | T1344 | prep | of,Members |
R964 | T1346 | T1349 | det | the,factor |
R965 | T1347 | T1349 | nmod | TNF,factor |
R966 | T1348 | T1349 | amod | receptor-associated,factor |
R967 | T1349 | T1345 | pobj | factor,of |
R968 | T1350 | T1349 | punct | (,factor |
R969 | T1351 | T1349 | appos | TRAF,factor |
R970 | T1352 | T1351 | punct | ),TRAF |
R971 | T1353 | T1349 | conj | family,factor |
R972 | T1354 | T1353 | punct | ",",family |
R973 | T1355 | T1344 | prep | including,Members |
R974 | T1356 | T1355 | pobj | TRAF1,including |
R975 | T1357 | T1356 | punct | ",",TRAF1 |
R976 | T1358 | T1356 | appos | TRAF2,TRAF1 |
R977 | T1359 | T1356 | punct | ",",TRAF1 |
R978 | T1360 | T1356 | appos | TRAF3,TRAF1 |
R979 | T1361 | T1344 | punct | ",",Members |
R980 | T1362 | T1344 | cc | and,Members |
R981 | T1363 | T1365 | nsubj | TRAF6,appear |
R982 | T1364 | T1365 | punct | ",",appear |
R983 | T1365 | T1365 | ROOT | appear,appear |
R984 | T1366 | T1367 | aux | to,be |
R985 | T1367 | T1365 | xcomp | be,appear |
R986 | T1368 | T1369 | advmod | particularly,important |
R987 | T1369 | T1367 | acomp | important,be |
R988 | T1370 | T1369 | prep | for,important |
R989 | T1371 | T1372 | det | the,initiation |
R990 | T1372 | T1370 | pobj | initiation,for |
R991 | T1373 | T1372 | cc | and,initiation |
R992 | T1374 | T1372 | conj | regulation,initiation |
R993 | T1375 | T1372 | prep | of,initiation |
R994 | T1376 | T1375 | pobj | CD40,of |
R995 | T1377 | T1367 | advcl | signaling,be |
R996 | T1378 | T1380 | nmod | [,] |
R997 | T1379 | T1380 | nummod | 4,] |
R998 | T1380 | T1377 | dobj | ],signaling |
R999 | T1381 | T1365 | punct | .,appear |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2317 | 181-190 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
T2344 | 162-172 | http://purl.obolibrary.org/obo/GO_0065007 | denotes | regulation |
T2346 | 162-190 | http://purl.obolibrary.org/obo/GO_2000348 | denotes | regulation of CD40 signaling |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1187 | 0-195 | Sentence | denotes | Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]. |
T22 | 0-195 | Sentence | denotes | Members of the TNF receptor-associated factor (TRAF) family, including TRAF1, TRAF2, TRAF3, and TRAF6, appear to be particularly important for the initiation and regulation of CD40 signaling [4]. |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2255 | 15-18 | P01375 | denotes | TNF |
T2256 | 15-45 | Q9Y4K3 | denotes | TNF receptor-associated factor |
T2257 | 15-45 | Q13114 | denotes | TNF receptor-associated factor |
T2258 | 15-45 | Q12933 | denotes | TNF receptor-associated factor |
T2259 | 78-83 | Q12933 | denotes | TRAF2 |
T2260 | 85-90 | Q13114 | denotes | TRAF3 |
T2261 | 96-101 | Q9Y4K3 | denotes | TRAF6 |
T2262 | 176-180 | P25942 | denotes | CD40 |
test2
Id | Subject | Object | Predicate | Lexical cue | Speculation |
---|---|---|---|---|---|
T1060 | 71-76 | Protein | denotes | TRAF1 | |
T1061 | 78-83 | Protein | denotes | TRAF2 | |
T1062 | 85-90 | Protein | denotes | TRAF3 | |
T1063 | 96-101 | Protein | denotes | TRAF6 | true |
T1064 | 176-180 | Protein | denotes | CD40 |