PMC:3148254 / 14145-15212
Annnotations
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16162 | 44-48 | Protein | denotes | CD40 |
| T16163 | 101-105 | Protein | denotes | HOIP |
| T16164 | 106-115 | Negative_regulation | denotes | deficient |
| T16165 | 123-127 | Protein | denotes | CD40 |
| T16166 | 164-168 | Protein | denotes | HOIP |
| T16167 | 169-178 | Negative_regulation | denotes | deficient |
| T16168 | 298-302 | Protein | denotes | HOIP |
| T16169 | 303-312 | Negative_regulation | denotes | deficient |
| T16170 | 364-368 | Protein | denotes | HOIP |
| T16171 | 370-374 | Protein | denotes | HOIP |
| T16172 | 380-384 | Protein | denotes | HOIP |
| T16173 | 413-418 | Protein | denotes | CD154 |
| T16174 | 419-429 | Gene_expression | denotes | expressing |
| T16175 | 531-538 | Negative_regulation | denotes | lacking |
| T16176 | 539-544 | Protein | denotes | CD154 |
| T16177 | 652-664 | Protein | denotes | Phospho-IκBα |
| T16178 | 666-671 | Protein | denotes | pIκBα |
| T16179 | 739-743 | Protein | denotes | IκBα |
| T16180 | 826-830 | Protein | denotes | IκBα |
| T16181 | 1044-1048 | Protein | denotes | HOIP |
| T16182 | 1049-1058 | Negative_regulation | denotes | deficient |
| R12750 | T16163 | T16164 | themeOf | HOIP,deficient |
| R12751 | T16166 | T16167 | themeOf | HOIP,deficient |
| R12752 | T16168 | T16169 | themeOf | HOIP,deficient |
| R12753 | T16173 | T16174 | themeOf | CD154,expressing |
| R12754 | T16176 | T16175 | themeOf | CD154,lacking |
| R12755 | T16178 | T16177 | equivalentTo | pIκBα,Phospho-IκBα |
| R12756 | T16181 | T16182 | themeOf | HOIP,deficient |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16631 | 44-48 | Protein | denotes | CD40 |
| T16632 | 71-76 | Protein | denotes | NF-κB |
| T16633 | 81-84 | Protein | denotes | JNK |
| T16634 | 57-67 | Positive_regulation | denotes | activation |
| T16635 | 49-56 | Positive_regulation | denotes | induced |
| T16636 | 57-67 | Positive_regulation | denotes | activation |
| T16637 | 123-127 | Protein | denotes | CD40 |
| T16638 | 413-418 | Protein | denotes | CD154 |
| T16639 | 419-429 | Gene_expression | denotes | expressing |
| T16640 | 539-544 | Protein | denotes | CD154 |
| T16641 | 531-538 | Negative_regulation | denotes | lacking |
| T16642 | 652-664 | Protein | denotes | Phospho-IκBα |
| T16643 | 666-671 | Protein | denotes | pIκBα |
| T16644 | 685-688 | Protein | denotes | JNK |
| T16645 | 690-694 | Protein | denotes | pJNK |
| T16646 | 739-743 | Protein | denotes | IκBα |
| T16647 | 754-757 | Protein | denotes | JNK |
| T16648 | 778-781 | Protein | denotes | JNK |
| T16649 | 803-806 | Protein | denotes | p46 |
| T16650 | 811-823 | Protein | denotes | p54 isoforms |
| T16651 | 793-802 | Binding | denotes | recognize |
| T16652 | 793-802 | Binding | denotes | recognize |
| T16653 | 826-836 | Protein | denotes | IκBα blots |
| T16654 | 860-865 | Protein | denotes | actin |
| R13124 | T16631 | T16635 | causeOf | CD40,induced |
| R13125 | T16632 | T16634 | themeOf | NF-κB,activation |
| R13126 | T16634 | T16635 | themeOf | activation,induced |
| R13127 | T16635 | T16636 | themeOf | induced,activation |
| R13128 | T16638 | T16639 | themeOf | CD154,expressing |
| R13129 | T16640 | T16641 | themeOf | CD154,lacking |
| R13130 | T16649 | T16651 | themeOf | p46,recognize |
| R13131 | T16650 | T16652 | themeOf | p54 isoforms,recognize |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16655 | 44-48 | Protein | denotes | CD40 |
| T16656 | 101-105 | Protein | denotes | HOIP |
| T16657 | 106-115 | Negative_regulation | denotes | deficient |
| T16658 | 123-127 | Protein | denotes | CD40 |
| T16659 | 164-168 | Protein | denotes | HOIP |
| T16660 | 169-178 | Negative_regulation | denotes | deficient |
| T16661 | 298-302 | Protein | denotes | HOIP |
| T16662 | 303-312 | Negative_regulation | denotes | deficient |
| T16663 | 364-368 | Protein | denotes | HOIP |
| T16664 | 370-374 | Protein | denotes | HOIP |
| T16665 | 380-384 | Protein | denotes | HOIP |
| T16666 | 413-418 | Protein | denotes | CD154 |
| T16667 | 419-429 | Gene_expression | denotes | expressing |
| T16668 | 531-538 | Negative_regulation | denotes | lacking |
| T16669 | 539-544 | Protein | denotes | CD154 |
| T16670 | 652-664 | Protein | denotes | Phospho-IκBα |
| T16671 | 666-671 | Protein | denotes | pIκBα |
| T16672 | 739-743 | Protein | denotes | IκBα |
| T16673 | 826-830 | Protein | denotes | IκBα |
| T16674 | 1044-1048 | Protein | denotes | HOIP |
| T16675 | 1049-1058 | Negative_regulation | denotes | deficient |
| R13132 | T16656 | T16657 | themeOf | HOIP,deficient |
| R13133 | T16659 | T16660 | themeOf | HOIP,deficient |
| R13134 | T16661 | T16662 | themeOf | HOIP,deficient |
| R13135 | T16666 | T16667 | themeOf | CD154,expressing |
| R13136 | T16669 | T16668 | themeOf | CD154,lacking |
| R13137 | T16671 | T16670 | equivalentTo | pIκBα,Phospho-IκBα |
| R13138 | T16674 | T16675 | themeOf | HOIP,deficient |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16374 | 44-56 | JJ | denotes | CD40-induced |
| T16375 | 57-67 | NN | denotes | activation |
| T16376 | 68-70 | IN | denotes | of |
| T16377 | 71-76 | NN | denotes | NF-κB |
| T16378 | 77-80 | CC | denotes | and |
| T16379 | 81-84 | NN | denotes | JNK |
| T16380 | 85-87 | VB | denotes | is |
| T16381 | 88-97 | JJ | denotes | defective |
| T16382 | 98-100 | IN | denotes | in |
| T16383 | 101-115 | JJ | denotes | HOIP-deficient |
| T16384 | 116-121 | NN | denotes | cells |
| T16385 | 123-136 | JJ | denotes | CD40-mediated |
| T16386 | 137-146 | NN | denotes | signaling |
| T16387 | 147-150 | VB | denotes | was |
| T16388 | 151-160 | JJ | denotes | defective |
| T16389 | 161-163 | IN | denotes | in |
| T16390 | 164-178 | JJ | denotes | HOIP-deficient |
| T16391 | 179-184 | NN | denotes | cells |
| T16392 | 185-186 | -LRB- | denotes | ( |
| T16393 | 186-193 | JJ | denotes | HOIP-/- |
| T16394 | 194-195 | SYM | denotes | + |
| T16395 | 196-200 | NN | denotes | pMIP |
| T16396 | 200-201 | -RRB- | denotes | ) |
| T16397 | 201-202 | -COMMA- | denotes | , |
| T16398 | 203-206 | CC | denotes | but |
| T16399 | 207-213 | JJ | denotes | intact |
| T16400 | 214-216 | IN | denotes | in |
| T16401 | 217-225 | JJ | denotes | parental |
| T16402 | 226-231 | NN | denotes | cells |
| T16403 | 232-242 | VB | denotes | transduced |
| T16404 | 243-247 | IN | denotes | with |
| T16405 | 248-250 | DT | denotes | an |
| T16406 | 251-256 | JJ | denotes | empty |
| T16407 | 257-267 | JJ | denotes | retroviral |
| T16408 | 268-274 | NN | denotes | vector |
| T16409 | 275-276 | -LRB- | denotes | ( |
| T16410 | 276-282 | NN | denotes | A20.2J |
| T16411 | 283-284 | SYM | denotes | + |
| T16412 | 285-289 | NN | denotes | pMIP |
| T16413 | 289-290 | -RRB- | denotes | ) |
| T16414 | 291-294 | CC | denotes | and |
| T16415 | 295-297 | IN | denotes | in |
| T16416 | 298-312 | JJ | denotes | HOIP-deficient |
| T16417 | 313-318 | NN | denotes | cells |
| T16418 | 319-329 | VB | denotes | transduced |
| T16419 | 330-334 | IN | denotes | with |
| T16420 | 335-336 | DT | denotes | a |
| T16421 | 337-347 | JJ | denotes | retroviral |
| T16422 | 348-354 | NN | denotes | vector |
| T16423 | 355-363 | VB | denotes | encoding |
| T16424 | 364-368 | NN | denotes | HOIP |
| T16425 | 369-370 | -LRB- | denotes | ( |
| T16426 | 370-377 | JJ | denotes | HOIP-/- |
| T16427 | 378-379 | SYM | denotes | + |
| T16428 | 380-384 | NN | denotes | HOIP |
| T16429 | 384-385 | -RRB- | denotes | ) |
| T16430 | 387-392 | NN | denotes | Cells |
| T16431 | 393-397 | VB | denotes | were |
| T16432 | 398-407 | VB | denotes | activated |
| T16433 | 408-412 | IN | denotes | with |
| T16434 | 413-429 | JJ | denotes | CD154-expressing |
| T16435 | 430-436 | NN | denotes | insect |
| T16436 | 437-442 | NN | denotes | cells |
| T16437 | 443-446 | IN | denotes | for |
| T16438 | 447-450 | DT | denotes | the |
| T16439 | 451-456 | NN | denotes | times |
| T16440 | 457-466 | VB | denotes | indicated |
| T16441 | 468-470 | IN | denotes | As |
| T16442 | 471-472 | DT | denotes | a |
| T16443 | 473-481 | JJ | denotes | negative |
| T16444 | 482-489 | NN | denotes | control |
| T16445 | 489-490 | -COMMA- | denotes | , |
| T16446 | 491-496 | NN | denotes | cells |
| T16447 | 497-501 | VB | denotes | were |
| T16448 | 502-512 | VB | denotes | stimulated |
| T16449 | 513-517 | IN | denotes | with |
| T16450 | 518-524 | NN | denotes | insect |
| T16451 | 525-530 | NN | denotes | cells |
| T16452 | 531-538 | VB | denotes | lacking |
| T16453 | 539-544 | NN | denotes | CD154 |
| T16454 | 545-546 | -LRB- | denotes | ( |
| T16455 | 546-547 | CD | denotes | 5 |
| T16456 | 548-554 | JJ | denotes | minute |
| T16457 | 555-559 | NN | denotes | time |
| T16458 | 560-565 | NN | denotes | point |
| T16459 | 566-570 | RB | denotes | only |
| T16460 | 570-571 | -RRB- | denotes | ) |
| T16461 | 573-580 | JJ | denotes | Western |
| T16462 | 581-586 | NN | denotes | blots |
| T16463 | 587-589 | IN | denotes | of |
| T16464 | 590-600 | JJ | denotes | whole-cell |
| T16465 | 601-608 | NN | denotes | lysates |
| T16466 | 609-613 | VB | denotes | were |
| T16467 | 614-620 | VB | denotes | probed |
| T16468 | 621-625 | IN | denotes | with |
| T16469 | 626-629 | DT | denotes | the |
| T16470 | 630-639 | JJ | denotes | indicated |
| T16471 | 640-650 | NN | denotes | antibodies |
| T16472 | 652-664 | NN | denotes | Phospho-IκBα |
| T16473 | 665-666 | -LRB- | denotes | ( |
| T16474 | 666-671 | NN | denotes | pIκBα |
| T16475 | 671-672 | -RRB- | denotes | ) |
| T16476 | 673-676 | CC | denotes | and |
| T16477 | 677-688 | NN | denotes | phospho-JNK |
| T16478 | 689-690 | -LRB- | denotes | ( |
| T16479 | 690-694 | NN | denotes | pJNK |
| T16480 | 694-695 | -RRB- | denotes | ) |
| T16481 | 696-701 | NN | denotes | blots |
| T16482 | 702-706 | VB | denotes | were |
| T16483 | 707-715 | VB | denotes | stripped |
| T16484 | 716-719 | CC | denotes | and |
| T16485 | 720-728 | VB | denotes | reprobed |
| T16486 | 729-732 | IN | denotes | for |
| T16487 | 733-738 | JJ | denotes | total |
| T16488 | 739-743 | NN | denotes | IκBα |
| T16489 | 744-747 | CC | denotes | and |
| T16490 | 748-753 | JJ | denotes | total |
| T16491 | 754-757 | NN | denotes | JNK |
| T16492 | 757-758 | -COMMA- | denotes | , |
| T16493 | 759-771 | RB | denotes | respectively |
| T16494 | 772-773 | -LRB- | denotes | ( |
| T16495 | 773-781 | JJ | denotes | anti-JNK |
| T16496 | 782-792 | NN | denotes | antibodies |
| T16497 | 793-802 | VB | denotes | recognize |
| T16498 | 803-806 | NN | denotes | p46 |
| T16499 | 807-810 | CC | denotes | and |
| T16500 | 811-814 | NN | denotes | p54 |
| T16501 | 815-823 | NN | denotes | isoforms |
| T16502 | 823-824 | -RRB- | denotes | ) |
| T16503 | 826-830 | NN | denotes | IκBα |
| T16504 | 831-836 | NN | denotes | blots |
| T16505 | 837-841 | VB | denotes | were |
| T16506 | 842-846 | RB | denotes | also |
| T16507 | 847-855 | VB | denotes | reprobed |
| T16508 | 856-859 | IN | denotes | for |
| T16509 | 860-865 | NN | denotes | actin |
| T16510 | 866-868 | TO | denotes | to |
| T16511 | 869-880 | VB | denotes | demonstrate |
| T16512 | 881-886 | JJ | denotes | equal |
| T16513 | 887-891 | NN | denotes | lane |
| T16514 | 892-899 | NN | denotes | loading |
| T16515 | 901-910 | JJ | denotes | Molecular |
| T16516 | 911-918 | NN | denotes | weights |
| T16517 | 919-922 | VB | denotes | are |
| T16518 | 923-932 | VB | denotes | indicated |
| T16519 | 933-935 | IN | denotes | at |
| T16520 | 936-941 | NN | denotes | right |
| T16521 | 943-950 | JJ | denotes | Similar |
| T16522 | 951-958 | NN | denotes | results |
| T16523 | 959-963 | VB | denotes | were |
| T16524 | 964-972 | VB | denotes | obtained |
| T16525 | 973-975 | IN | denotes | in |
| T16526 | 976-977 | DT | denotes | a |
| T16527 | 978-984 | JJ | denotes | second |
| T16528 | 985-995 | NN | denotes | experiment |
| T16529 | 996-999 | CC | denotes | and |
| T16530 | 1000-1002 | IN | denotes | in |
| T16531 | 1003-1006 | CD | denotes | two |
| T16532 | 1007-1017 | JJ | denotes | additional |
| T16533 | 1018-1029 | NN | denotes | experiments |
| T16534 | 1030-1034 | IN | denotes | with |
| T16535 | 1035-1036 | DT | denotes | a |
| T16536 | 1037-1043 | JJ | denotes | second |
| T16537 | 1044-1058 | JJ | denotes | HOIP-deficient |
| T16538 | 1059-1064 | NN | denotes | clone |
| R12939 | T16375 | T16374 | arg1Of | activation,CD40-induced |
| R12940 | T16375 | T16376 | arg1Of | activation,of |
| R12941 | T16375 | T16380 | arg1Of | activation,is |
| R12942 | T16375 | T16381 | arg1Of | activation,defective |
| R12943 | T16377 | T16378 | arg1Of | NF-κB,and |
| R12944 | T16378 | T16376 | arg2Of | and,of |
| R12945 | T16379 | T16378 | arg2Of | JNK,and |
| R12946 | T16380 | T16382 | arg1Of | is,in |
| R12947 | T16381 | T16380 | arg2Of | defective,is |
| R12948 | T16384 | T16382 | arg2Of | cells,in |
| R12949 | T16384 | T16383 | arg1Of | cells,HOIP-deficient |
| R12950 | T16386 | T16385 | arg1Of | signaling,CD40-mediated |
| R12951 | T16386 | T16387 | arg1Of | signaling,was |
| R12952 | T16386 | T16388 | arg1Of | signaling,defective |
| R12953 | T16386 | T16399 | arg1Of | signaling,intact |
| R12954 | T16388 | T16389 | arg1Of | defective,in |
| R12955 | T16388 | T16398 | arg1Of | defective,but |
| R12956 | T16391 | T16389 | arg2Of | cells,in |
| R12957 | T16391 | T16390 | arg1Of | cells,HOIP-deficient |
| R12958 | T16391 | T16392 | arg1Of | cells,( |
| R12959 | T16393 | T16392 | arg2Of | HOIP-/-,( |
| R12960 | T16393 | T16394 | arg1Of | HOIP-/-,+ |
| R12961 | T16393 | T16395 | arg1Of | HOIP-/-,pMIP |
| R12962 | T16396 | T16392 | arg3Of | ),( |
| R12963 | T16398 | T16387 | arg2Of | but,was |
| R12964 | T16398 | T16397 | arg1Of | but,"," |
| R12965 | T16399 | T16398 | arg2Of | intact,but |
| R12966 | T16399 | T16400 | arg1Of | intact,in |
| R12967 | T16402 | T16400 | arg2Of | cells,in |
| R12968 | T16402 | T16401 | arg1Of | cells,parental |
| R12969 | T16402 | T16403 | arg2Of | cells,transduced |
| R12970 | T16403 | T16404 | arg1Of | transduced,with |
| R12971 | T16403 | T16415 | arg1Of | transduced,in |
| R12972 | T16404 | T16414 | arg1Of | with,and |
| R12973 | T16408 | T16404 | arg2Of | vector,with |
| R12974 | T16408 | T16405 | arg1Of | vector,an |
| R12975 | T16408 | T16406 | arg1Of | vector,empty |
| R12976 | T16408 | T16407 | arg1Of | vector,retroviral |
| R12977 | T16408 | T16409 | arg1Of | vector,( |
| R12978 | T16410 | T16409 | arg2Of | A20.2J,( |
| R12979 | T16410 | T16411 | arg1Of | A20.2J,+ |
| R12980 | T16410 | T16412 | arg1Of | A20.2J,pMIP |
| R12981 | T16413 | T16409 | arg3Of | ),( |
| R12982 | T16415 | T16414 | arg2Of | in,and |
| R12983 | T16417 | T16415 | arg2Of | cells,in |
| R12984 | T16417 | T16416 | arg1Of | cells,HOIP-deficient |
| R12985 | T16417 | T16418 | arg2Of | cells,transduced |
| R12986 | T16418 | T16419 | arg1Of | transduced,with |
| R12987 | T16422 | T16419 | arg2Of | vector,with |
| R12988 | T16422 | T16420 | arg1Of | vector,a |
| R12989 | T16422 | T16421 | arg1Of | vector,retroviral |
| R12990 | T16422 | T16423 | arg1Of | vector,encoding |
| R12991 | T16424 | T16423 | arg2Of | HOIP,encoding |
| R12992 | T16424 | T16425 | arg1Of | HOIP,( |
| R12993 | T16426 | T16425 | arg2Of | HOIP-/-,( |
| R12994 | T16426 | T16427 | arg1Of | HOIP-/-,+ |
| R12995 | T16426 | T16428 | arg1Of | HOIP-/-,HOIP |
| R12996 | T16429 | T16425 | arg3Of | ),( |
| R12997 | T16430 | T16431 | arg1Of | Cells,were |
| R12998 | T16430 | T16432 | arg2Of | Cells,activated |
| R12999 | T16432 | T16431 | arg2Of | activated,were |
| R13000 | T16432 | T16433 | arg1Of | activated,with |
| R13001 | T16432 | T16440 | arg2Of | activated,indicated |
| R13002 | T16435 | T16433 | arg2Of | insect,with |
| R13003 | T16435 | T16434 | arg1Of | insect,CD154-expressing |
| R13004 | T16436 | T16437 | arg1Of | cells,for |
| R13005 | T16436 | T16440 | arg1Of | cells,indicated |
| R13006 | T16439 | T16437 | arg2Of | times,for |
| R13007 | T16439 | T16438 | arg1Of | times,the |
| R13008 | T16444 | T16441 | arg2Of | control,As |
| R13009 | T16444 | T16442 | arg1Of | control,a |
| R13010 | T16444 | T16443 | arg1Of | control,negative |
| R13011 | T16446 | T16447 | arg1Of | cells,were |
| R13012 | T16446 | T16448 | arg2Of | cells,stimulated |
| R13013 | T16448 | T16441 | arg1Of | stimulated,As |
| R13014 | T16448 | T16445 | arg1Of | stimulated,"," |
| R13015 | T16448 | T16447 | arg2Of | stimulated,were |
| R13016 | T16448 | T16449 | arg1Of | stimulated,with |
| R13017 | T16451 | T16449 | arg2Of | cells,with |
| R13018 | T16451 | T16450 | arg1Of | cells,insect |
| R13019 | T16451 | T16452 | arg1Of | cells,lacking |
| R13020 | T16453 | T16452 | arg2Of | CD154,lacking |
| R13021 | T16453 | T16454 | arg1Of | CD154,( |
| R13022 | T16458 | T16454 | arg2Of | point,( |
| R13023 | T16458 | T16455 | arg1Of | point,5 |
| R13024 | T16458 | T16456 | arg1Of | point,minute |
| R13025 | T16458 | T16457 | arg1Of | point,time |
| R13026 | T16458 | T16459 | arg1Of | point,only |
| R13027 | T16460 | T16454 | arg3Of | ),( |
| R13028 | T16462 | T16461 | arg1Of | blots,Western |
| R13029 | T16462 | T16463 | arg1Of | blots,of |
| R13030 | T16462 | T16466 | arg1Of | blots,were |
| R13031 | T16462 | T16467 | arg2Of | blots,probed |
| R13032 | T16465 | T16463 | arg2Of | lysates,of |
| R13033 | T16465 | T16464 | arg1Of | lysates,whole-cell |
| R13034 | T16467 | T16466 | arg2Of | probed,were |
| R13035 | T16467 | T16468 | arg1Of | probed,with |
| R13036 | T16471 | T16468 | arg2Of | antibodies,with |
| R13037 | T16471 | T16469 | arg1Of | antibodies,the |
| R13038 | T16471 | T16470 | arg1Of | antibodies,indicated |
| R13039 | T16472 | T16473 | arg1Of | Phospho-IκBα,( |
| R13040 | T16472 | T16476 | arg1Of | Phospho-IκBα,and |
| R13041 | T16474 | T16473 | arg2Of | pIκBα,( |
| R13042 | T16475 | T16473 | arg3Of | ),( |
| R13043 | T16476 | T16482 | arg1Of | and,were |
| R13044 | T16476 | T16483 | arg2Of | and,stripped |
| R13045 | T16476 | T16485 | arg2Of | and,reprobed |
| R13046 | T16479 | T16478 | arg2Of | pJNK,( |
| R13047 | T16480 | T16478 | arg3Of | ),( |
| R13048 | T16481 | T16476 | arg2Of | blots,and |
| R13049 | T16481 | T16477 | arg1Of | blots,phospho-JNK |
| R13050 | T16481 | T16478 | arg1Of | blots,( |
| R13051 | T16483 | T16484 | arg1Of | stripped,and |
| R13052 | T16484 | T16482 | arg2Of | and,were |
| R13053 | T16484 | T16486 | arg1Of | and,for |
| R13054 | T16484 | T16492 | arg1Of | and,"," |
| R13055 | T16485 | T16484 | arg2Of | reprobed,and |
| R13056 | T16488 | T16487 | arg1Of | IκBα,total |
| R13057 | T16488 | T16489 | arg1Of | IκBα,and |
| R13058 | T16489 | T16486 | arg2Of | and,for |
| R13059 | T16491 | T16489 | arg2Of | JNK,and |
| R13060 | T16491 | T16490 | arg1Of | JNK,total |
| R13061 | T16496 | T16495 | arg1Of | antibodies,anti-JNK |
| R13062 | T16496 | T16497 | arg1Of | antibodies,recognize |
| R13063 | T16497 | T16492 | arg2Of | recognize,"," |
| R13064 | T16497 | T16493 | arg1Of | recognize,respectively |
| R13065 | T16497 | T16494 | arg1Of | recognize,( |
| R13066 | T16497 | T16502 | arg1Of | recognize,) |
| R13067 | T16498 | T16499 | arg1Of | p46,and |
| R13068 | T16500 | T16499 | arg2Of | p54,and |
| R13069 | T16501 | T16497 | arg2Of | isoforms,recognize |
| R13070 | T16501 | T16498 | arg1Of | isoforms,p46 |
| R13071 | T16501 | T16500 | arg1Of | isoforms,p54 |
| R13072 | T16504 | T16503 | arg1Of | blots,IκBα |
| R13073 | T16504 | T16505 | arg1Of | blots,were |
| R13074 | T16504 | T16507 | arg2Of | blots,reprobed |
| R13075 | T16504 | T16511 | arg1Of | blots,demonstrate |
| R13076 | T16507 | T16505 | arg2Of | reprobed,were |
| R13077 | T16507 | T16506 | arg1Of | reprobed,also |
| R13078 | T16507 | T16508 | arg1Of | reprobed,for |
| R13079 | T16509 | T16508 | arg2Of | actin,for |
| R13080 | T16511 | T16507 | arg3Of | demonstrate,reprobed |
| R13081 | T16511 | T16510 | arg1Of | demonstrate,to |
| R13082 | T16514 | T16511 | arg2Of | loading,demonstrate |
| R13083 | T16514 | T16512 | arg1Of | loading,equal |
| R13084 | T16514 | T16513 | arg1Of | loading,lane |
| R13085 | T16516 | T16515 | arg1Of | weights,Molecular |
| R13086 | T16516 | T16517 | arg1Of | weights,are |
| R13087 | T16516 | T16518 | arg2Of | weights,indicated |
| R13088 | T16518 | T16517 | arg2Of | indicated,are |
| R13089 | T16518 | T16519 | arg1Of | indicated,at |
| R13090 | T16520 | T16519 | arg2Of | right,at |
| R13091 | T16522 | T16521 | arg1Of | results,Similar |
| R13092 | T16522 | T16523 | arg1Of | results,were |
| R13093 | T16522 | T16524 | arg2Of | results,obtained |
| R13094 | T16524 | T16523 | arg2Of | obtained,were |
| R13095 | T16524 | T16525 | arg1Of | obtained,in |
| R13096 | T16524 | T16530 | arg1Of | obtained,in |
| R13097 | T16524 | T16534 | arg1Of | obtained,with |
| R13098 | T16525 | T16529 | arg1Of | in,and |
| R13099 | T16528 | T16525 | arg2Of | experiment,in |
| R13100 | T16528 | T16526 | arg1Of | experiment,a |
| R13101 | T16528 | T16527 | arg1Of | experiment,second |
| R13102 | T16530 | T16529 | arg2Of | in,and |
| R13103 | T16533 | T16530 | arg2Of | experiments,in |
| R13104 | T16533 | T16531 | arg1Of | experiments,two |
| R13105 | T16533 | T16532 | arg1Of | experiments,additional |
| R13106 | T16538 | T16534 | arg2Of | clone,with |
| R13107 | T16538 | T16535 | arg1Of | clone,a |
| R13108 | T16538 | T16536 | arg1Of | clone,second |
| R13109 | T16538 | T16537 | arg1Of | clone,HOIP-deficient |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16192 | 44-56 | JJ | denotes | CD40-induced |
| T16193 | 57-67 | NN | denotes | activation |
| T16194 | 68-70 | IN | denotes | of |
| T16195 | 71-76 | NNP | denotes | NF-κB |
| T16196 | 77-80 | CC | denotes | and |
| T16197 | 81-84 | NNP | denotes | JNK |
| T16198 | 85-87 | VBZ | denotes | is |
| T16199 | 88-97 | JJ | denotes | defective |
| T16200 | 98-100 | IN | denotes | in |
| T16201 | 101-115 | JJ | denotes | HOIP-deficient |
| T16202 | 116-121 | NNS | denotes | cells |
| T16203 | 121-122 | . | denotes | . |
| T16204 | 123-136 | JJ | denotes | CD40-mediated |
| T16205 | 137-146 | VBG | denotes | signaling |
| T16206 | 147-150 | VBD | denotes | was |
| T16207 | 151-160 | JJ | denotes | defective |
| T16208 | 161-163 | IN | denotes | in |
| T16209 | 164-178 | JJ | denotes | HOIP-deficient |
| T16210 | 179-184 | NNS | denotes | cells |
| T16211 | 185-186 | -LRB- | denotes | ( |
| T16212 | 186-190 | SYM | denotes | HOIP |
| T16213 | 190-191 | : | denotes | - |
| T16214 | 191-192 | SYM | denotes | / |
| T16215 | 192-193 | : | denotes | - |
| T16216 | 194-195 | NN | denotes | + |
| T16217 | 196-200 | NNP | denotes | pMIP |
| T16218 | 200-201 | -RRB- | denotes | ) |
| T16219 | 201-202 | , | denotes | , |
| T16220 | 203-206 | CC | denotes | but |
| T16221 | 207-213 | JJ | denotes | intact |
| T16222 | 214-216 | IN | denotes | in |
| T16223 | 217-225 | JJ | denotes | parental |
| T16224 | 226-231 | NNS | denotes | cells |
| T16225 | 232-242 | VBN | denotes | transduced |
| T16226 | 243-247 | IN | denotes | with |
| T16227 | 248-250 | DT | denotes | an |
| T16228 | 251-256 | JJ | denotes | empty |
| T16229 | 257-267 | NN | denotes | retroviral |
| T16230 | 268-274 | NN | denotes | vector |
| T16231 | 275-276 | -LRB- | denotes | ( |
| T16232 | 276-279 | CD | denotes | A20 |
| T16233 | 279-281 | CD | denotes | .2 |
| T16234 | 281-282 | NNP | denotes | J |
| T16235 | 283-284 | CD | denotes | + |
| T16236 | 285-289 | NNP | denotes | pMIP |
| T16237 | 289-290 | -RRB- | denotes | ) |
| T16238 | 291-294 | CC | denotes | and |
| T16239 | 295-297 | IN | denotes | in |
| T16240 | 298-312 | JJ | denotes | HOIP-deficient |
| T16241 | 313-318 | NNS | denotes | cells |
| T16242 | 319-329 | VBN | denotes | transduced |
| T16243 | 330-334 | IN | denotes | with |
| T16244 | 335-336 | DT | denotes | a |
| T16245 | 337-347 | JJ | denotes | retroviral |
| T16246 | 348-354 | NN | denotes | vector |
| T16247 | 355-363 | VBG | denotes | encoding |
| T16248 | 364-368 | NNP | denotes | HOIP |
| T16249 | 369-370 | -LRB- | denotes | ( |
| T16250 | 370-374 | NNP | denotes | HOIP |
| T16251 | 374-375 | : | denotes | - |
| T16252 | 375-376 | SYM | denotes | / |
| T16253 | 376-377 | : | denotes | - |
| T16254 | 378-379 | NN | denotes | + |
| T16255 | 380-384 | NNP | denotes | HOIP |
| T16256 | 384-385 | -RRB- | denotes | ) |
| T16257 | 385-386 | . | denotes | . |
| T16258 | 387-392 | NNS | denotes | Cells |
| T16259 | 393-397 | VBD | denotes | were |
| T16260 | 398-407 | VBN | denotes | activated |
| T16261 | 408-412 | IN | denotes | with |
| T16262 | 413-429 | JJ | denotes | CD154-expressing |
| T16263 | 430-436 | NN | denotes | insect |
| T16264 | 437-442 | NNS | denotes | cells |
| T16265 | 443-446 | IN | denotes | for |
| T16266 | 447-450 | DT | denotes | the |
| T16267 | 451-456 | NNS | denotes | times |
| T16268 | 457-466 | VBD | denotes | indicated |
| T16269 | 466-467 | . | denotes | . |
| T16270 | 468-470 | IN | denotes | As |
| T16271 | 471-472 | DT | denotes | a |
| T16272 | 473-481 | JJ | denotes | negative |
| T16273 | 482-489 | NN | denotes | control |
| T16274 | 489-490 | , | denotes | , |
| T16275 | 491-496 | NNS | denotes | cells |
| T16276 | 497-501 | VBD | denotes | were |
| T16277 | 502-512 | VBN | denotes | stimulated |
| T16278 | 513-517 | IN | denotes | with |
| T16279 | 518-524 | JJ | denotes | insect |
| T16280 | 525-530 | NNS | denotes | cells |
| T16281 | 531-538 | VBG | denotes | lacking |
| T16282 | 539-544 | NNP | denotes | CD154 |
| T16283 | 545-546 | -LRB- | denotes | ( |
| T16284 | 546-547 | CD | denotes | 5 |
| T16285 | 548-554 | JJ | denotes | minute |
| T16286 | 555-559 | NN | denotes | time |
| T16287 | 560-565 | NN | denotes | point |
| T16288 | 566-570 | RB | denotes | only |
| T16289 | 570-571 | -RRB- | denotes | ) |
| T16290 | 571-572 | . | denotes | . |
| T16291 | 573-580 | JJ | denotes | Western |
| T16292 | 581-586 | NNS | denotes | blots |
| T16293 | 587-589 | IN | denotes | of |
| T16294 | 590-600 | JJ | denotes | whole-cell |
| T16295 | 601-608 | NNS | denotes | lysates |
| T16296 | 609-613 | VBD | denotes | were |
| T16297 | 614-620 | VBN | denotes | probed |
| T16298 | 621-625 | IN | denotes | with |
| T16299 | 626-629 | DT | denotes | the |
| T16300 | 630-639 | VBN | denotes | indicated |
| T16301 | 640-650 | NNS | denotes | antibodies |
| T16302 | 650-651 | . | denotes | . |
| T16303 | 652-664 | NNP | denotes | Phospho-IκBα |
| T16304 | 665-666 | -LRB- | denotes | ( |
| T16305 | 666-671 | NNP | denotes | pIκBα |
| T16306 | 671-672 | -RRB- | denotes | ) |
| T16307 | 673-676 | CC | denotes | and |
| T16308 | 677-688 | NNP | denotes | phospho-JNK |
| T16309 | 689-690 | -LRB- | denotes | ( |
| T16310 | 690-694 | NNP | denotes | pJNK |
| T16311 | 694-695 | -RRB- | denotes | ) |
| T16312 | 696-701 | NNS | denotes | blots |
| T16313 | 702-706 | VBD | denotes | were |
| T16314 | 707-715 | VBN | denotes | stripped |
| T16315 | 716-719 | CC | denotes | and |
| T16316 | 720-728 | VBN | denotes | reprobed |
| T16317 | 729-732 | IN | denotes | for |
| T16318 | 733-738 | JJ | denotes | total |
| T16319 | 739-743 | NNP | denotes | IκBα |
| T16320 | 744-747 | CC | denotes | and |
| T16321 | 748-753 | JJ | denotes | total |
| T16322 | 754-757 | NNP | denotes | JNK |
| T16323 | 757-758 | , | denotes | , |
| T16324 | 759-771 | RB | denotes | respectively |
| T16325 | 772-773 | -LRB- | denotes | ( |
| T16326 | 773-781 | JJ | denotes | anti-JNK |
| T16327 | 782-792 | NNS | denotes | antibodies |
| T16328 | 793-802 | VBP | denotes | recognize |
| T16329 | 803-806 | CD | denotes | p46 |
| T16330 | 807-810 | CC | denotes | and |
| T16331 | 811-814 | CD | denotes | p54 |
| T16332 | 815-823 | NNS | denotes | isoforms |
| T16333 | 823-824 | -RRB- | denotes | ) |
| T16334 | 824-825 | . | denotes | . |
| T16335 | 826-830 | NNP | denotes | IκBα |
| T16336 | 831-836 | NNS | denotes | blots |
| T16337 | 837-841 | VBD | denotes | were |
| T16338 | 842-846 | RB | denotes | also |
| T16339 | 847-855 | VBN | denotes | reprobed |
| T16340 | 856-859 | IN | denotes | for |
| T16341 | 860-865 | NN | denotes | actin |
| T16342 | 866-868 | TO | denotes | to |
| T16343 | 869-880 | VB | denotes | demonstrate |
| T16344 | 881-886 | JJ | denotes | equal |
| T16345 | 887-891 | NN | denotes | lane |
| T16346 | 892-899 | VBG | denotes | loading |
| T16347 | 899-900 | . | denotes | . |
| T16348 | 901-910 | JJ | denotes | Molecular |
| T16349 | 911-918 | NNS | denotes | weights |
| T16350 | 919-922 | VBP | denotes | are |
| T16351 | 923-932 | VBN | denotes | indicated |
| T16352 | 933-935 | IN | denotes | at |
| T16353 | 936-941 | NN | denotes | right |
| T16354 | 941-942 | . | denotes | . |
| T16355 | 943-950 | JJ | denotes | Similar |
| T16356 | 951-958 | NNS | denotes | results |
| T16357 | 959-963 | VBD | denotes | were |
| T16358 | 964-972 | VBN | denotes | obtained |
| T16359 | 973-975 | IN | denotes | in |
| T16360 | 976-977 | DT | denotes | a |
| T16361 | 978-984 | JJ | denotes | second |
| T16362 | 985-995 | NN | denotes | experiment |
| T16363 | 996-999 | CC | denotes | and |
| T16364 | 1000-1002 | IN | denotes | in |
| T16365 | 1003-1006 | CD | denotes | two |
| T16366 | 1007-1017 | JJ | denotes | additional |
| T16367 | 1018-1029 | NNS | denotes | experiments |
| T16368 | 1030-1034 | IN | denotes | with |
| T16369 | 1035-1036 | DT | denotes | a |
| T16370 | 1037-1043 | JJ | denotes | second |
| T16371 | 1044-1058 | JJ | denotes | HOIP-deficient |
| T16372 | 1059-1064 | NN | denotes | clone |
| T16373 | 1064-1065 | . | denotes | . |
| R12757 | T16192 | T16193 | amod | CD40-induced,activation |
| R12758 | T16193 | T16198 | nsubj | activation,is |
| R12759 | T16194 | T16193 | prep | of,activation |
| R12760 | T16195 | T16194 | pobj | NF-κB,of |
| R12761 | T16196 | T16195 | cc | and,NF-κB |
| R12762 | T16197 | T16195 | conj | JNK,NF-κB |
| R12763 | T16198 | T16198 | ROOT | is,is |
| R12764 | T16199 | T16198 | acomp | defective,is |
| R12765 | T16200 | T16199 | prep | in,defective |
| R12766 | T16201 | T16202 | amod | HOIP-deficient,cells |
| R12767 | T16202 | T16200 | pobj | cells,in |
| R12768 | T16203 | T16198 | punct | .,is |
| R12769 | T16204 | T16205 | amod | CD40-mediated,signaling |
| R12770 | T16205 | T16206 | nsubj | signaling,was |
| R12771 | T16206 | T16206 | ROOT | was,was |
| R12772 | T16207 | T16206 | acomp | defective,was |
| R12773 | T16208 | T16207 | prep | in,defective |
| R12774 | T16209 | T16210 | amod | HOIP-deficient,cells |
| R12775 | T16210 | T16208 | pobj | cells,in |
| R12776 | T16211 | T16216 | punct | (,+ |
| R12777 | T16212 | T16216 | punct | HOIP,+ |
| R12778 | T16213 | T16216 | punct | -,+ |
| R12779 | T16214 | T16216 | punct | /,+ |
| R12780 | T16215 | T16216 | punct | -,+ |
| R12781 | T16216 | T16206 | parataxis | +,was |
| R12782 | T16217 | T16216 | npadvmod | pMIP,+ |
| R12783 | T16218 | T16216 | punct | ),+ |
| R12784 | T16219 | T16216 | punct | ",",+ |
| R12785 | T16220 | T16216 | cc | but,+ |
| R12786 | T16221 | T16216 | conj | intact,+ |
| R12787 | T16222 | T16221 | prep | in,intact |
| R12788 | T16223 | T16224 | amod | parental,cells |
| R12789 | T16224 | T16222 | pobj | cells,in |
| R12790 | T16225 | T16216 | conj | transduced,+ |
| R12791 | T16226 | T16225 | prep | with,transduced |
| R12792 | T16227 | T16230 | det | an,vector |
| R12793 | T16228 | T16230 | amod | empty,vector |
| R12794 | T16229 | T16230 | compound | retroviral,vector |
| R12795 | T16230 | T16226 | pobj | vector,with |
| R12796 | T16231 | T16230 | punct | (,vector |
| R12797 | T16232 | T16236 | nummod | A20,pMIP |
| R12798 | T16233 | T16236 | nummod | .2,pMIP |
| R12799 | T16234 | T16236 | nmod | J,pMIP |
| R12800 | T16235 | T16236 | nummod | +,pMIP |
| R12801 | T16236 | T16230 | appos | pMIP,vector |
| R12802 | T16237 | T16236 | punct | ),pMIP |
| R12803 | T16238 | T16226 | cc | and,with |
| R12804 | T16239 | T16225 | prep | in,transduced |
| R12805 | T16240 | T16241 | amod | HOIP-deficient,cells |
| R12806 | T16241 | T16239 | pobj | cells,in |
| R12807 | T16242 | T16225 | conj | transduced,transduced |
| R12808 | T16243 | T16242 | prep | with,transduced |
| R12809 | T16244 | T16246 | det | a,vector |
| R12810 | T16245 | T16246 | amod | retroviral,vector |
| R12811 | T16246 | T16243 | pobj | vector,with |
| R12812 | T16247 | T16248 | compound | encoding,HOIP |
| R12813 | T16248 | T16246 | appos | HOIP,vector |
| R12814 | T16249 | T16255 | punct | (,HOIP |
| R12815 | T16250 | T16255 | compound | HOIP,HOIP |
| R12816 | T16251 | T16254 | punct | -,+ |
| R12817 | T16252 | T16254 | punct | /,+ |
| R12818 | T16253 | T16254 | punct | -,+ |
| R12819 | T16254 | T16255 | compound | +,HOIP |
| R12820 | T16255 | T16248 | appos | HOIP,HOIP |
| R12821 | T16256 | T16255 | punct | ),HOIP |
| R12822 | T16257 | T16206 | punct | .,was |
| R12823 | T16258 | T16260 | nsubjpass | Cells,activated |
| R12824 | T16259 | T16260 | auxpass | were,activated |
| R12825 | T16260 | T16260 | ROOT | activated,activated |
| R12826 | T16261 | T16260 | prep | with,activated |
| R12827 | T16262 | T16264 | amod | CD154-expressing,cells |
| R12828 | T16263 | T16264 | compound | insect,cells |
| R12829 | T16264 | T16261 | pobj | cells,with |
| R12830 | T16265 | T16260 | prep | for,activated |
| R12831 | T16266 | T16267 | det | the,times |
| R12832 | T16267 | T16265 | pobj | times,for |
| R12833 | T16268 | T16260 | conj | indicated,activated |
| R12834 | T16269 | T16260 | punct | .,activated |
| R12835 | T16270 | T16277 | prep | As,stimulated |
| R12836 | T16271 | T16273 | det | a,control |
| R12837 | T16272 | T16273 | amod | negative,control |
| R12838 | T16273 | T16270 | pobj | control,As |
| R12839 | T16274 | T16277 | punct | ",",stimulated |
| R12840 | T16275 | T16277 | nsubjpass | cells,stimulated |
| R12841 | T16276 | T16277 | auxpass | were,stimulated |
| R12842 | T16277 | T16277 | ROOT | stimulated,stimulated |
| R12843 | T16278 | T16277 | prep | with,stimulated |
| R12844 | T16279 | T16280 | amod | insect,cells |
| R12845 | T16280 | T16278 | pobj | cells,with |
| R12846 | T16281 | T16280 | acl | lacking,cells |
| R12847 | T16282 | T16281 | dobj | CD154,lacking |
| R12848 | T16283 | T16282 | punct | (,CD154 |
| R12849 | T16284 | T16287 | nummod | 5,point |
| R12850 | T16285 | T16286 | amod | minute,time |
| R12851 | T16286 | T16287 | compound | time,point |
| R12852 | T16287 | T16282 | appos | point,CD154 |
| R12853 | T16288 | T16289 | advmod | only,) |
| R12854 | T16289 | T16282 | punct | ),CD154 |
| R12855 | T16290 | T16277 | punct | .,stimulated |
| R12856 | T16291 | T16292 | amod | Western,blots |
| R12857 | T16292 | T16297 | nsubjpass | blots,probed |
| R12858 | T16293 | T16292 | prep | of,blots |
| R12859 | T16294 | T16295 | amod | whole-cell,lysates |
| R12860 | T16295 | T16293 | pobj | lysates,of |
| R12861 | T16296 | T16297 | auxpass | were,probed |
| R12862 | T16297 | T16297 | ROOT | probed,probed |
| R12863 | T16298 | T16297 | prep | with,probed |
| R12864 | T16299 | T16301 | det | the,antibodies |
| R12865 | T16300 | T16301 | amod | indicated,antibodies |
| R12866 | T16301 | T16298 | pobj | antibodies,with |
| R12867 | T16302 | T16297 | punct | .,probed |
| R12868 | T16303 | T16312 | nmod | Phospho-IκBα,blots |
| R12869 | T16304 | T16305 | punct | (,pIκBα |
| R12870 | T16305 | T16303 | appos | pIκBα,Phospho-IκBα |
| R12871 | T16306 | T16305 | punct | ),pIκBα |
| R12872 | T16307 | T16303 | cc | and,Phospho-IκBα |
| R12873 | T16308 | T16303 | conj | phospho-JNK,Phospho-IκBα |
| R12874 | T16309 | T16308 | punct | (,phospho-JNK |
| R12875 | T16310 | T16308 | appos | pJNK,phospho-JNK |
| R12876 | T16311 | T16308 | punct | ),phospho-JNK |
| R12877 | T16312 | T16314 | nsubjpass | blots,stripped |
| R12878 | T16313 | T16314 | auxpass | were,stripped |
| R12879 | T16314 | T16314 | ROOT | stripped,stripped |
| R12880 | T16315 | T16314 | cc | and,stripped |
| R12881 | T16316 | T16314 | conj | reprobed,stripped |
| R12882 | T16317 | T16316 | prep | for,reprobed |
| R12883 | T16318 | T16319 | amod | total,IκBα |
| R12884 | T16319 | T16317 | pobj | IκBα,for |
| R12885 | T16320 | T16316 | cc | and,reprobed |
| R12886 | T16321 | T16322 | compound | total,JNK |
| R12887 | T16322 | T16316 | conj | JNK,reprobed |
| R12888 | T16323 | T16322 | punct | ",",JNK |
| R12889 | T16324 | T16322 | conj | respectively,JNK |
| R12890 | T16325 | T16328 | punct | (,recognize |
| R12891 | T16326 | T16327 | amod | anti-JNK,antibodies |
| R12892 | T16327 | T16328 | nsubj | antibodies,recognize |
| R12893 | T16328 | T16322 | parataxis | recognize,JNK |
| R12894 | T16329 | T16328 | dobj | p46,recognize |
| R12895 | T16330 | T16329 | cc | and,p46 |
| R12896 | T16331 | T16329 | conj | p54,p46 |
| R12897 | T16332 | T16322 | conj | isoforms,JNK |
| R12898 | T16333 | T16322 | punct | ),JNK |
| R12899 | T16334 | T16314 | punct | .,stripped |
| R12900 | T16335 | T16336 | compound | IκBα,blots |
| R12901 | T16336 | T16339 | nsubjpass | blots,reprobed |
| R12902 | T16337 | T16339 | auxpass | were,reprobed |
| R12903 | T16338 | T16337 | advmod | also,were |
| R12904 | T16339 | T16339 | ROOT | reprobed,reprobed |
| R12905 | T16340 | T16339 | prep | for,reprobed |
| R12906 | T16341 | T16343 | nsubj | actin,demonstrate |
| R12907 | T16342 | T16343 | aux | to,demonstrate |
| R12908 | T16343 | T16339 | advcl | demonstrate,reprobed |
| R12909 | T16344 | T16345 | amod | equal,lane |
| R12910 | T16345 | T16346 | compound | lane,loading |
| R12911 | T16346 | T16343 | dobj | loading,demonstrate |
| R12912 | T16347 | T16339 | punct | .,reprobed |
| R12913 | T16348 | T16349 | amod | Molecular,weights |
| R12914 | T16349 | T16351 | nsubjpass | weights,indicated |
| R12915 | T16350 | T16351 | auxpass | are,indicated |
| R12916 | T16351 | T16351 | ROOT | indicated,indicated |
| R12917 | T16352 | T16351 | prep | at,indicated |
| R12918 | T16353 | T16352 | pobj | right,at |
| R12919 | T16354 | T16351 | punct | .,indicated |
| R12920 | T16355 | T16356 | amod | Similar,results |
| R12921 | T16356 | T16358 | nsubjpass | results,obtained |
| R12922 | T16357 | T16358 | auxpass | were,obtained |
| R12923 | T16358 | T16358 | ROOT | obtained,obtained |
| R12924 | T16359 | T16358 | prep | in,obtained |
| R12925 | T16360 | T16362 | det | a,experiment |
| R12926 | T16361 | T16362 | amod | second,experiment |
| R12927 | T16362 | T16359 | pobj | experiment,in |
| R12928 | T16363 | T16359 | cc | and,in |
| R12929 | T16364 | T16358 | prep | in,obtained |
| R12930 | T16365 | T16367 | nummod | two,experiments |
| R12931 | T16366 | T16367 | amod | additional,experiments |
| R12932 | T16367 | T16364 | pobj | experiments,in |
| R12933 | T16368 | T16367 | prep | with,experiments |
| R12934 | T16369 | T16372 | det | a,clone |
| R12935 | T16370 | T16372 | amod | second,clone |
| R12936 | T16371 | T16372 | amod | HOIP-deficient,clone |
| R12937 | T16372 | T16368 | pobj | clone,with |
| R12938 | T16373 | T16358 | punct | .,obtained |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16565 | 57-76 | http://purl.obolibrary.org/obo/GO_0051092 | denotes | activation of NF-κB |
| T16566 | 81-84 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T16567 | 685-688 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T16568 | 754-757 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T16569 | 778-781 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T16570 | 137-146 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16571 | 81-84 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T16572 | 685-688 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T16573 | 754-757 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T16574 | 778-781 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T16575 | 640-650 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
| T16576 | 782-792 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16577 | 116-121 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T16578 | 179-184 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T16579 | 226-231 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T16580 | 313-318 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T16581 | 437-442 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T16582 | 491-496 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T16583 | 525-530 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T16584 | 596-600 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T16585 | 640-650 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
| T16586 | 782-792 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
| T16587 | 640-650 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
| T16588 | 782-792 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16183 | 44-122 | Sentence | denotes | CD40-induced activation of NF-κB and JNK is defective in HOIP-deficient cells. |
| T16184 | 123-386 | Sentence | denotes | CD40-mediated signaling was defective in HOIP-deficient cells (HOIP-/- + pMIP), but intact in parental cells transduced with an empty retroviral vector (A20.2J + pMIP) and in HOIP-deficient cells transduced with a retroviral vector encoding HOIP (HOIP-/- + HOIP). |
| T16185 | 387-467 | Sentence | denotes | Cells were activated with CD154-expressing insect cells for the times indicated. |
| T16186 | 468-572 | Sentence | denotes | As a negative control, cells were stimulated with insect cells lacking CD154 (5 minute time point only). |
| T16187 | 573-651 | Sentence | denotes | Western blots of whole-cell lysates were probed with the indicated antibodies. |
| T16188 | 652-825 | Sentence | denotes | Phospho-IκBα (pIκBα) and phospho-JNK (pJNK) blots were stripped and reprobed for total IκBα and total JNK, respectively (anti-JNK antibodies recognize p46 and p54 isoforms). |
| T16189 | 826-900 | Sentence | denotes | IκBα blots were also reprobed for actin to demonstrate equal lane loading. |
| T16190 | 901-942 | Sentence | denotes | Molecular weights are indicated at right. |
| T16191 | 943-1065 | Sentence | denotes | Similar results were obtained in a second experiment and in two additional experiments with a second HOIP-deficient clone. |
| T98 | 0-122 | Sentence | denotes | 10.1371/journal.pone.0023061.g004 Figure 4 CD40-induced activation of NF-κB and JNK is defective in HOIP-deficient cells. |
| T99 | 123-386 | Sentence | denotes | CD40-mediated signaling was defective in HOIP-deficient cells (HOIP-/- + pMIP), but intact in parental cells transduced with an empty retroviral vector (A20.2J + pMIP) and in HOIP-deficient cells transduced with a retroviral vector encoding HOIP (HOIP-/- + HOIP). |
| T100 | 387-467 | Sentence | denotes | Cells were activated with CD154-expressing insect cells for the times indicated. |
| T101 | 468-572 | Sentence | denotes | As a negative control, cells were stimulated with insect cells lacking CD154 (5 minute time point only). |
| T102 | 573-651 | Sentence | denotes | Western blots of whole-cell lysates were probed with the indicated antibodies. |
| T103 | 652-825 | Sentence | denotes | Phospho-IκBα (pIκBα) and phospho-JNK (pJNK) blots were stripped and reprobed for total IκBα and total JNK, respectively (anti-JNK antibodies recognize p46 and p54 isoforms). |
| T104 | 826-900 | Sentence | denotes | IκBα blots were also reprobed for actin to demonstrate equal lane loading. |
| T105 | 901-942 | Sentence | denotes | Molecular weights are indicated at right. |
| T106 | 943-1065 | Sentence | denotes | Similar results were obtained in a second experiment and in two additional experiments with a second HOIP-deficient clone. |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16539 | 44-48 | P25942 | denotes | CD40 |
| T16540 | 101-105 | Q96EP0 | denotes | HOIP |
| T16541 | 123-127 | P25942 | denotes | CD40 |
| T16542 | 164-168 | Q96EP0 | denotes | HOIP |
| T16543 | 186-190 | Q96EP0 | denotes | HOIP |
| T16544 | 276-279 | P21580 | denotes | A20 |
| T16545 | 298-302 | Q96EP0 | denotes | HOIP |
| T16546 | 364-368 | Q96EP0 | denotes | HOIP |
| T16547 | 370-374 | Q96EP0 | denotes | HOIP |
| T16548 | 380-384 | Q96EP0 | denotes | HOIP |
| T16549 | 413-418 | P29965 | denotes | CD154 |
| T16550 | 539-544 | P29965 | denotes | CD154 |
| T16551 | 660-664 | P25963 | denotes | IκBα |
| T16552 | 739-743 | P25963 | denotes | IκBα |
| T16553 | 811-814 | Q13451 | denotes | p54 |
| T16554 | 826-830 | P25963 | denotes | IκBα |
| T16555 | 1044-1048 | Q96EP0 | denotes | HOIP |
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16141 | 44-48 | Protein | denotes | CD40 |
| T16142 | 101-105 | Protein | denotes | HOIP |
| T16143 | 106-115 | Negative_regulation | denotes | deficient |
| T16144 | 123-127 | Protein | denotes | CD40 |
| T16145 | 164-168 | Protein | denotes | HOIP |
| T16146 | 169-178 | Negative_regulation | denotes | deficient |
| T16147 | 298-302 | Protein | denotes | HOIP |
| T16148 | 303-312 | Negative_regulation | denotes | deficient |
| T16149 | 364-368 | Protein | denotes | HOIP |
| T16150 | 370-374 | Protein | denotes | HOIP |
| T16151 | 380-384 | Protein | denotes | HOIP |
| T16152 | 413-418 | Protein | denotes | CD154 |
| T16153 | 419-429 | Gene_expression | denotes | expressing |
| T16154 | 531-538 | Negative_regulation | denotes | lacking |
| T16155 | 539-544 | Protein | denotes | CD154 |
| T16156 | 652-664 | Protein | denotes | Phospho-IκBα |
| T16157 | 666-671 | Protein | denotes | pIκBα |
| T16158 | 739-743 | Protein | denotes | IκBα |
| T16159 | 826-830 | Protein | denotes | IκBα |
| T16160 | 1044-1048 | Protein | denotes | HOIP |
| T16161 | 1049-1058 | Negative_regulation | denotes | deficient |
| R12742 | T16142 | T16143 | themeOf | HOIP,deficient |
| R12743 | T16145 | T16146 | themeOf | HOIP,deficient |
| R12744 | T16147 | T16148 | themeOf | HOIP,deficient |
| R12745 | T16150 | T16149 | equivalentTo | HOIP,HOIP |
| R12746 | T16152 | T16153 | themeOf | CD154,expressing |
| R12747 | T16155 | T16154 | themeOf | CD154,lacking |
| R12748 | T16157 | T16156 | equivalentTo | pIκBα,Phospho-IκBα |
| R12749 | T16160 | T16161 | themeOf | HOIP,deficient |