PMC:3148254 / 1217-1400
Annnotations
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T104","span":{"begin":48,"end":57},"obj":"Negative_regulation"},{"id":"T105","span":{"begin":61,"end":65},"obj":"Protein"},{"id":"T106","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T107","span":{"begin":90,"end":97},"obj":"Positive_regulation"},{"id":"T108","span":{"begin":98,"end":110},"obj":"Positive_regulation"},{"id":"T109","span":{"begin":114,"end":118},"obj":"Protein"}],"relations":[{"id":"R48","pred":"themeOf","subj":"T105","obj":"T104"},{"id":"R49","pred":"causeOf","subj":"T106","obj":"T107"},{"id":"R51","pred":"themeOf","subj":"T108","obj":"T107"},{"id":"R52","pred":"themeOf","subj":"T109","obj":"T108"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T921","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T922","span":{"begin":114,"end":118},"obj":"Protein"},{"id":"T923","span":{"begin":137,"end":160},"obj":"Protein"},{"id":"T924","span":{"begin":169,"end":182},"obj":"Transcription"},{"id":"T925","span":{"begin":123,"end":133},"obj":"Positive_regulation"}],"relations":[{"id":"R668","pred":"themeOf","subj":"T923","obj":"T924"},{"id":"R669","pred":"themeOf","subj":"T924","obj":"T925"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T964","span":{"begin":48,"end":57},"obj":"Negative_regulation"},{"id":"T965","span":{"begin":61,"end":65},"obj":"Protein"},{"id":"T966","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T967","span":{"begin":90,"end":97},"obj":"Positive_regulation"},{"id":"T968","span":{"begin":98,"end":110},"obj":"Positive_regulation"},{"id":"T969","span":{"begin":114,"end":118},"obj":"Protein"}],"relations":[{"id":"R690","pred":"themeOf","subj":"T965","obj":"T964"},{"id":"R691","pred":"causeOf","subj":"T966","obj":"T967"},{"id":"R693","pred":"themeOf","subj":"T968","obj":"T967"},{"id":"R694","pred":"themeOf","subj":"T969","obj":"T968"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T609","span":{"begin":2,"end":6},"obj":"NN"},{"id":"T610","span":{"begin":7,"end":16},"obj":"VB"},{"id":"T611","span":{"begin":17,"end":19},"obj":"TO"},{"id":"T612","span":{"begin":20,"end":28},"obj":"VB"},{"id":"T613","span":{"begin":29,"end":34},"obj":"NN"},{"id":"T614","span":{"begin":35,"end":36},"obj":"NN"},{"id":"T615","span":{"begin":37,"end":41},"obj":"NN"},{"id":"T616","span":{"begin":42,"end":47},"obj":"NN"},{"id":"T617","span":{"begin":48,"end":57},"obj":"JJ"},{"id":"T618","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T619","span":{"begin":61,"end":65},"obj":"NN"},{"id":"T620","span":{"begin":67,"end":69},"obj":"PRP"},{"id":"T621","span":{"begin":70,"end":75},"obj":"VB"},{"id":"T622","span":{"begin":76,"end":80},"obj":"IN"},{"id":"T623","span":{"begin":81,"end":84},"obj":"DT"},{"id":"T624","span":{"begin":85,"end":97},"obj":"JJ"},{"id":"T625","span":{"begin":98,"end":110},"obj":"NN"},{"id":"T626","span":{"begin":111,"end":113},"obj":"IN"},{"id":"T627","span":{"begin":114,"end":118},"obj":"NN"},{"id":"T628","span":{"begin":119,"end":122},"obj":"CC"},{"id":"T629","span":{"begin":123,"end":133},"obj":"NN"},{"id":"T630","span":{"begin":134,"end":136},"obj":"IN"},{"id":"T631","span":{"begin":137,"end":145},"obj":"NN"},{"id":"T632","span":{"begin":146,"end":160},"obj":"NN"},{"id":"T633","span":{"begin":161,"end":168},"obj":"NN"},{"id":"T634","span":{"begin":169,"end":182},"obj":"NN"}],"relations":[{"id":"R529","pred":"arg1Of","subj":"T612","obj":"T611"},{"id":"R530","pred":"arg2Of","subj":"T616","obj":"T612"},{"id":"R531","pred":"arg1Of","subj":"T616","obj":"T613"},{"id":"R532","pred":"arg1Of","subj":"T616","obj":"T614"},{"id":"R533","pred":"arg1Of","subj":"T616","obj":"T615"},{"id":"R534","pred":"arg1Of","subj":"T616","obj":"T617"},{"id":"R535","pred":"arg1Of","subj":"T617","obj":"T618"},{"id":"R536","pred":"arg2Of","subj":"T619","obj":"T618"},{"id":"R537","pred":"arg1Of","subj":"T620","obj":"T621"},{"id":"R538","pred":"arg1Of","subj":"T625","obj":"T623"},{"id":"R539","pred":"arg1Of","subj":"T625","obj":"T624"},{"id":"R540","pred":"arg1Of","subj":"T625","obj":"T626"},{"id":"R541","pred":"arg1Of","subj":"T625","obj":"T628"},{"id":"R542","pred":"arg2Of","subj":"T627","obj":"T626"},{"id":"R545","pred":"arg2Of","subj":"T629","obj":"T628"},{"id":"R546","pred":"arg1Of","subj":"T629","obj":"T630"},{"id":"R547","pred":"arg2Of","subj":"T634","obj":"T630"},{"id":"R548","pred":"arg1Of","subj":"T634","obj":"T631"},{"id":"R549","pred":"arg1Of","subj":"T634","obj":"T632"},{"id":"R550","pred":"arg1Of","subj":"T634","obj":"T633"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T326","span":{"begin":2,"end":6},"obj":"NN"},{"id":"T327","span":{"begin":7,"end":16},"obj":"VBG"},{"id":"T328","span":{"begin":17,"end":19},"obj":"TO"},{"id":"T329","span":{"begin":20,"end":28},"obj":"VB"},{"id":"T330","span":{"begin":29,"end":34},"obj":"NN"},{"id":"T331","span":{"begin":35,"end":36},"obj":"NNP"},{"id":"T332","span":{"begin":37,"end":41},"obj":"NN"},{"id":"T333","span":{"begin":42,"end":47},"obj":"NNS"},{"id":"T334","span":{"begin":48,"end":57},"obj":"VBP"},{"id":"T335","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T336","span":{"begin":61,"end":65},"obj":"NNP"},{"id":"T337","span":{"begin":65,"end":66},"obj":"."},{"id":"T338","span":{"begin":67,"end":69},"obj":"PRP"},{"id":"T339","span":{"begin":70,"end":75},"obj":"VBD"},{"id":"T340","span":{"begin":76,"end":80},"obj":"IN"},{"id":"T341","span":{"begin":81,"end":84},"obj":"DT"},{"id":"T342","span":{"begin":85,"end":97},"obj":"JJ"},{"id":"T343","span":{"begin":98,"end":110},"obj":"NN"},{"id":"T344","span":{"begin":111,"end":113},"obj":"IN"},{"id":"T345","span":{"begin":114,"end":118},"obj":"NNP"},{"id":"T346","span":{"begin":119,"end":122},"obj":"CC"},{"id":"T347","span":{"begin":123,"end":133},"obj":"NN"},{"id":"T348","span":{"begin":134,"end":136},"obj":"IN"},{"id":"T349","span":{"begin":137,"end":145},"obj":"NN"},{"id":"T350","span":{"begin":146,"end":160},"obj":"NN"},{"id":"T351","span":{"begin":161,"end":168},"obj":"NN"},{"id":"T352","span":{"begin":169,"end":182},"obj":"NN"}],"relations":[{"id":"R249","pred":"acl","subj":"T327","obj":"T326"},{"id":"R250","pred":"aux","subj":"T328","obj":"T329"},{"id":"R251","pred":"xcomp","subj":"T329","obj":"T327"},{"id":"R252","pred":"compound","subj":"T330","obj":"T333"},{"id":"R253","pred":"compound","subj":"T331","obj":"T332"},{"id":"R254","pred":"compound","subj":"T332","obj":"T333"},{"id":"R255","pred":"dobj","subj":"T333","obj":"T329"},{"id":"R257","pred":"prep","subj":"T335","obj":"T334"},{"id":"R258","pred":"pobj","subj":"T336","obj":"T335"},{"id":"R260","pred":"nsubj","subj":"T338","obj":"T339"},{"id":"R261","pred":"ROOT","subj":"T339","obj":"T339"},{"id":"R263","pred":"det","subj":"T341","obj":"T343"},{"id":"R264","pred":"amod","subj":"T342","obj":"T343"},{"id":"R266","pred":"prep","subj":"T344","obj":"T343"},{"id":"R267","pred":"pobj","subj":"T345","obj":"T344"},{"id":"R268","pred":"cc","subj":"T346","obj":"T345"},{"id":"R269","pred":"conj","subj":"T347","obj":"T343"},{"id":"R270","pred":"prep","subj":"T348","obj":"T347"},{"id":"R271","pred":"nmod","subj":"T349","obj":"T352"},{"id":"R272","pred":"compound","subj":"T350","obj":"T352"},{"id":"R273","pred":"compound","subj":"T351","obj":"T352"},{"id":"R274","pred":"pobj","subj":"T352","obj":"T348"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T792","span":{"begin":169,"end":182},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T796","span":{"begin":146,"end":160},"obj":"http://purl.obolibrary.org/obo/GO_0003823"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T803","span":{"begin":37,"end":41},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T726","span":{"begin":61,"end":65},"obj":"Q96EP0"},{"id":"T727","span":{"begin":85,"end":89},"obj":"P25942"},{"id":"T728","span":{"begin":114,"end":118},"obj":"P33681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}
test2
{"project":"test2","denotations":[{"id":"T64","span":{"begin":48,"end":57},"obj":"Negative_regulation"},{"id":"T65","span":{"begin":61,"end":65},"obj":"Protein"},{"id":"T66","span":{"begin":85,"end":89},"obj":"Protein"},{"id":"T67","span":{"begin":90,"end":97},"obj":"Positive_regulation"},{"id":"T68","span":{"begin":98,"end":110},"obj":"Positive_regulation"},{"id":"T69","span":{"begin":114,"end":118},"obj":"Protein"},{"id":"T70","span":{"begin":123,"end":133},"obj":"Positive_regulation"},{"id":"T71","span":{"begin":169,"end":182},"obj":"Transcription"}],"relations":[{"id":"R30","pred":"themeOf","subj":"T65","obj":"T64"},{"id":"R31","pred":"causeOf","subj":"T66","obj":"T67"},{"id":"R32","pred":"themeOf","subj":"T68","obj":"T67"},{"id":"R33","pred":"themeOf","subj":"T69","obj":"T68"},{"id":"R34","pred":"themeOf","subj":"T71","obj":"T70"}],"text":"l gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 and activation of germline immunoglobulin epsilon transcription "}