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PMC:3148254 / 1217-1400 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T104 48-57 Negative_regulation denotes deficient
T105 61-65 Protein denotes HOIP
T106 85-89 Protein denotes CD40
T107 90-97 Positive_regulation denotes induced
T108 98-110 Positive_regulation denotes upregulation
T109 114-118 Protein denotes CD80
R48 T105 T104 themeOf HOIP,deficient
R49 T106 T107 causeOf CD40,induced
R51 T108 T107 themeOf upregulation,induced
R52 T109 T108 themeOf CD80,upregulation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T921 85-89 Protein denotes CD40
T922 114-118 Protein denotes CD80
T923 137-160 Protein denotes germline immunoglobulin
T924 169-182 Transcription denotes transcription
T925 123-133 Positive_regulation denotes activation
R668 T923 T924 themeOf germline immunoglobulin,transcription
R669 T924 T925 themeOf transcription,activation

events-check-again

Id Subject Object Predicate Lexical cue
T964 48-57 Negative_regulation denotes deficient
T965 61-65 Protein denotes HOIP
T966 85-89 Protein denotes CD40
T967 90-97 Positive_regulation denotes induced
T968 98-110 Positive_regulation denotes upregulation
T969 114-118 Protein denotes CD80
R690 T965 T964 themeOf HOIP,deficient
R691 T966 T967 causeOf CD40,induced
R693 T968 T967 themeOf upregulation,induced
R694 T969 T968 themeOf CD80,upregulation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T609 2-6 NN denotes gene
T610 7-16 VB denotes targeting
T611 17-19 TO denotes to
T612 20-28 VB denotes generate
T613 29-34 NN denotes mouse
T614 35-36 NN denotes B
T615 37-41 NN denotes cell
T616 42-47 NN denotes lines
T617 48-57 JJ denotes deficient
T618 58-60 IN denotes in
T619 61-65 NN denotes HOIP
T620 67-69 PRP denotes We
T621 70-75 VB denotes found
T622 76-80 IN denotes that
T623 81-84 DT denotes the
T624 85-97 JJ denotes CD40-induced
T625 98-110 NN denotes upregulation
T626 111-113 IN denotes of
T627 114-118 NN denotes CD80
T628 119-122 CC denotes and
T629 123-133 NN denotes activation
T630 134-136 IN denotes of
T631 137-145 NN denotes germline
T632 146-160 NN denotes immunoglobulin
T633 161-168 NN denotes epsilon
T634 169-182 NN denotes transcription
R529 T612 T611 arg1Of generate,to
R530 T616 T612 arg2Of lines,generate
R531 T616 T613 arg1Of lines,mouse
R532 T616 T614 arg1Of lines,B
R533 T616 T615 arg1Of lines,cell
R534 T616 T617 arg1Of lines,deficient
R535 T617 T618 arg1Of deficient,in
R536 T619 T618 arg2Of HOIP,in
R537 T620 T621 arg1Of We,found
R538 T625 T623 arg1Of upregulation,the
R539 T625 T624 arg1Of upregulation,CD40-induced
R540 T625 T626 arg1Of upregulation,of
R541 T625 T628 arg1Of upregulation,and
R542 T627 T626 arg2Of CD80,of
R545 T629 T628 arg2Of activation,and
R546 T629 T630 arg1Of activation,of
R547 T634 T630 arg2Of transcription,of
R548 T634 T631 arg1Of transcription,germline
R549 T634 T632 arg1Of transcription,immunoglobulin
R550 T634 T633 arg1Of transcription,epsilon

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T326 2-6 NN denotes gene
T327 7-16 VBG denotes targeting
T328 17-19 TO denotes to
T329 20-28 VB denotes generate
T330 29-34 NN denotes mouse
T331 35-36 NNP denotes B
T332 37-41 NN denotes cell
T333 42-47 NNS denotes lines
T334 48-57 VBP denotes deficient
T335 58-60 IN denotes in
T336 61-65 NNP denotes HOIP
T337 65-66 . denotes .
T338 67-69 PRP denotes We
T339 70-75 VBD denotes found
T340 76-80 IN denotes that
T341 81-84 DT denotes the
T342 85-97 JJ denotes CD40-induced
T343 98-110 NN denotes upregulation
T344 111-113 IN denotes of
T345 114-118 NNP denotes CD80
T346 119-122 CC denotes and
T347 123-133 NN denotes activation
T348 134-136 IN denotes of
T349 137-145 NN denotes germline
T350 146-160 NN denotes immunoglobulin
T351 161-168 NN denotes epsilon
T352 169-182 NN denotes transcription
R249 T327 T326 acl targeting,gene
R250 T328 T329 aux to,generate
R251 T329 T327 xcomp generate,targeting
R252 T330 T333 compound mouse,lines
R253 T331 T332 compound B,cell
R254 T332 T333 compound cell,lines
R255 T333 T329 dobj lines,generate
R257 T335 T334 prep in,deficient
R258 T336 T335 pobj HOIP,in
R260 T338 T339 nsubj We,found
R261 T339 T339 ROOT found,found
R263 T341 T343 det the,upregulation
R264 T342 T343 amod CD40-induced,upregulation
R266 T344 T343 prep of,upregulation
R267 T345 T344 pobj CD80,of
R268 T346 T345 cc and,CD80
R269 T347 T343 conj activation,upregulation
R270 T348 T347 prep of,activation
R271 T349 T352 nmod germline,transcription
R272 T350 T352 compound immunoglobulin,transcription
R273 T351 T352 compound epsilon,transcription
R274 T352 T348 pobj transcription,of

GO-BP

Id Subject Object Predicate Lexical cue
T792 169-182 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T796 146-160 http://purl.obolibrary.org/obo/GO_0003823 denotes immunoglobulin

GO-CC

Id Subject Object Predicate Lexical cue
T803 37-41 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T726 61-65 Q96EP0 denotes HOIP
T727 85-89 P25942 denotes CD40
T728 114-118 P33681 denotes CD80

test2

Id Subject Object Predicate Lexical cue
T64 48-57 Negative_regulation denotes deficient
T65 61-65 Protein denotes HOIP
T66 85-89 Protein denotes CD40
T67 90-97 Positive_regulation denotes induced
T68 98-110 Positive_regulation denotes upregulation
T69 114-118 Protein denotes CD80
T70 123-133 Positive_regulation denotes activation
T71 169-182 Transcription denotes transcription
R30 T65 T64 themeOf HOIP,deficient
R31 T66 T67 causeOf CD40,induced
R32 T68 T67 themeOf upregulation,induced
R33 T69 T68 themeOf CD80,upregulation
R34 T71 T70 themeOf transcription,activation