PMC:3148254 / 1164-1337 JSONTXT

{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T102","span":{"begin":10,"end":14},"obj":"Protein"},{"id":"T103","span":{"begin":18,"end":22},"obj":"Protein"},{"id":"T104","span":{"begin":101,"end":110},"obj":"Negative_regulation"},{"id":"T105","span":{"begin":114,"end":118},"obj":"Protein"},{"id":"T106","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T107","span":{"begin":143,"end":150},"obj":"Positive_regulation"},{"id":"T108","span":{"begin":151,"end":163},"obj":"Positive_regulation"},{"id":"T109","span":{"begin":167,"end":171},"obj":"Protein"}],"relations":[{"id":"R48","pred":"themeOf","subj":"T105","obj":"T104"},{"id":"R49","pred":"causeOf","subj":"T106","obj":"T107"},{"id":"R51","pred":"themeOf","subj":"T108","obj":"T107"},{"id":"R52","pred":"themeOf","subj":"T109","obj":"T108"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"e role of HOIP in CD40 signaling, we used somatic cell gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 a"}

{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T919","span":{"begin":10,"end":14},"obj":"Protein"},{"id":"T920","span":{"begin":18,"end":22},"obj":"Protein"},{"id":"T921","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T922","span":{"begin":167,"end":171},"obj":"Protein"}],"text":"e role of HOIP in CD40 signaling, we used somatic cell gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 a"}

{"project":"events-check-again","denotations":[{"id":"T962","span":{"begin":10,"end":14},"obj":"Protein"},{"id":"T963","span":{"begin":18,"end":22},"obj":"Protein"},{"id":"T964","span":{"begin":101,"end":110},"obj":"Negative_regulation"},{"id":"T965","span":{"begin":114,"end":118},"obj":"Protein"},{"id":"T966","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T967","span":{"begin":143,"end":150},"obj":"Positive_regulation"},{"id":"T968","span":{"begin":151,"end":163},"obj":"Positive_regulation"},{"id":"T969","span":{"begin":167,"end":171},"obj":"Protein"}],"relations":[{"id":"R690","pred":"themeOf","subj":"T965","obj":"T964"},{"id":"R691","pred":"causeOf","subj":"T966","obj":"T967"},{"id":"R693","pred":"themeOf","subj":"T968","obj":"T967"},{"id":"R694","pred":"themeOf","subj":"T969","obj":"T968"}],"text":"e role of HOIP in CD40 signaling, we used somatic cell gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 a"}

{"project":"pmc-enju-pas","denotations":[{"id":"T598","span":{"begin":2,"end":6},"obj":"NN"},{"id":"T599","span":{"begin":7,"end":9},"obj":"IN"},{"id":"T600","span":{"begin":10,"end":14},"obj":"NN"},{"id":"T601","span":{"begin":15,"end":17},"obj":"IN"},{"id":"T602","span":{"begin":18,"end":22},"obj":"NN"},{"id":"T603","span":{"begin":23,"end":32},"obj":"NN"},{"id":"T604","span":{"begin":32,"end":33},"obj":"-COMMA-"},{"id":"T605","span":{"begin":34,"end":36},"obj":"PRP"},{"id":"T606","span":{"begin":37,"end":41},"obj":"VB"},{"id":"T607","span":{"begin":42,"end":49},"obj":"JJ"},{"id":"T608","span":{"begin":50,"end":54},"obj":"NN"},{"id":"T609","span":{"begin":55,"end":59},"obj":"NN"},{"id":"T610","span":{"begin":60,"end":69},"obj":"VB"},{"id":"T611","span":{"begin":70,"end":72},"obj":"TO"},{"id":"T612","span":{"begin":73,"end":81},"obj":"VB"},{"id":"T613","span":{"begin":82,"end":87},"obj":"NN"},{"id":"T614","span":{"begin":88,"end":89},"obj":"NN"},{"id":"T615","span":{"begin":90,"end":94},"obj":"NN"},{"id":"T616","span":{"begin":95,"end":100},"obj":"NN"},{"id":"T617","span":{"begin":101,"end":110},"obj":"JJ"},{"id":"T618","span":{"begin":111,"end":113},"obj":"IN"},{"id":"T619","span":{"begin":114,"end":118},"obj":"NN"},{"id":"T620","span":{"begin":120,"end":122},"obj":"PRP"},{"id":"T621","span":{"begin":123,"end":128},"obj":"VB"},{"id":"T622","span":{"begin":129,"end":133},"obj":"IN"},{"id":"T623","span":{"begin":134,"end":137},"obj":"DT"},{"id":"T624","span":{"begin":138,"end":150},"obj":"JJ"},{"id":"T625","span":{"begin":151,"end":163},"obj":"NN"},{"id":"T626","span":{"begin":164,"end":166},"obj":"IN"},{"id":"T627","span":{"begin":167,"end":171},"obj":"NN"}],"relations":[{"id":"R516","pred":"arg1Of","subj":"T598","obj":"T599"},{"id":"R517","pred":"arg1Of","subj":"T598","obj":"T601"},{"id":"R518","pred":"arg2Of","subj":"T600","obj":"T599"},{"id":"R519","pred":"arg2Of","subj":"T603","obj":"T601"},{"id":"R520","pred":"arg1Of","subj":"T603","obj":"T602"},{"id":"R521","pred":"arg1Of","subj":"T605","obj":"T606"},{"id":"R523","pred":"arg1Of","subj":"T606","obj":"T604"},{"id":"R524","pred":"modOf","subj":"T606","obj":"T611"},{"id":"R525","pred":"arg2Of","subj":"T609","obj":"T606"},{"id":"R526","pred":"arg1Of","subj":"T609","obj":"T607"},{"id":"R527","pred":"arg1Of","subj":"T609","obj":"T608"},{"id":"R528","pred":"arg3Of","subj":"T610","obj":"T606"},{"id":"R529","pred":"arg1Of","subj":"T612","obj":"T611"},{"id":"R530","pred":"arg2Of","subj":"T616","obj":"T612"},{"id":"R531","pred":"arg1Of","subj":"T616","obj":"T613"},{"id":"R532","pred":"arg1Of","subj":"T616","obj":"T614"},{"id":"R533","pred":"arg1Of","subj":"T616","obj":"T615"},{"id":"R534","pred":"arg1Of","subj":"T616","obj":"T617"},{"id":"R535","pred":"arg1Of","subj":"T617","obj":"T618"},{"id":"R536","pred":"arg2Of","subj":"T619","obj":"T618"},{"id":"R537","pred":"arg1Of","subj":"T620","obj":"T621"},{"id":"R538","pred":"arg1Of","subj":"T625","obj":"T623"},{"id":"R539","pred":"arg1Of","subj":"T625","obj":"T624"},{"id":"R540","pred":"arg1Of","subj":"T625","obj":"T626"},{"id":"R542","pred":"arg2Of","subj":"T627","obj":"T626"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"e role of HOIP in CD40 signaling, we used somatic cell gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 a"}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T315","span":{"begin":2,"end":6},"obj":"NN"},{"id":"T316","span":{"begin":7,"end":9},"obj":"IN"},{"id":"T317","span":{"begin":10,"end":14},"obj":"NNP"},{"id":"T318","span":{"begin":15,"end":17},"obj":"IN"},{"id":"T319","span":{"begin":18,"end":22},"obj":"NNP"},{"id":"T320","span":{"begin":23,"end":32},"obj":"VBG"},{"id":"T321","span":{"begin":32,"end":33},"obj":","},{"id":"T322","span":{"begin":34,"end":36},"obj":"PRP"},{"id":"T323","span":{"begin":37,"end":41},"obj":"VBD"},{"id":"T324","span":{"begin":42,"end":49},"obj":"JJ"},{"id":"T325","span":{"begin":50,"end":54},"obj":"NN"},{"id":"T326","span":{"begin":55,"end":59},"obj":"NN"},{"id":"T327","span":{"begin":60,"end":69},"obj":"VBG"},{"id":"T328","span":{"begin":70,"end":72},"obj":"TO"},{"id":"T329","span":{"begin":73,"end":81},"obj":"VB"},{"id":"T330","span":{"begin":82,"end":87},"obj":"NN"},{"id":"T331","span":{"begin":88,"end":89},"obj":"NNP"},{"id":"T332","span":{"begin":90,"end":94},"obj":"NN"},{"id":"T333","span":{"begin":95,"end":100},"obj":"NNS"},{"id":"T334","span":{"begin":101,"end":110},"obj":"VBP"},{"id":"T335","span":{"begin":111,"end":113},"obj":"IN"},{"id":"T336","span":{"begin":114,"end":118},"obj":"NNP"},{"id":"T337","span":{"begin":118,"end":119},"obj":"."},{"id":"T338","span":{"begin":120,"end":122},"obj":"PRP"},{"id":"T339","span":{"begin":123,"end":128},"obj":"VBD"},{"id":"T340","span":{"begin":129,"end":133},"obj":"IN"},{"id":"T341","span":{"begin":134,"end":137},"obj":"DT"},{"id":"T342","span":{"begin":138,"end":150},"obj":"JJ"},{"id":"T343","span":{"begin":151,"end":163},"obj":"NN"},{"id":"T344","span":{"begin":164,"end":166},"obj":"IN"},{"id":"T345","span":{"begin":167,"end":171},"obj":"NNP"}],"relations":[{"id":"R238","pred":"prep","subj":"T316","obj":"T315"},{"id":"R239","pred":"pobj","subj":"T317","obj":"T316"},{"id":"R240","pred":"prep","subj":"T318","obj":"T315"},{"id":"R241","pred":"pobj","subj":"T319","obj":"T318"},{"id":"R242","pred":"acl","subj":"T320","obj":"T315"},{"id":"R243","pred":"punct","subj":"T321","obj":"T323"},{"id":"R244","pred":"nsubj","subj":"T322","obj":"T323"},{"id":"R245","pred":"ROOT","subj":"T323","obj":"T323"},{"id":"R246","pred":"compound","subj":"T324","obj":"T326"},{"id":"R247","pred":"compound","subj":"T325","obj":"T326"},{"id":"R248","pred":"dobj","subj":"T326","obj":"T323"},{"id":"R249","pred":"acl","subj":"T327","obj":"T326"},{"id":"R250","pred":"aux","subj":"T328","obj":"T329"},{"id":"R251","pred":"xcomp","subj":"T329","obj":"T327"},{"id":"R252","pred":"compound","subj":"T330","obj":"T333"},{"id":"R253","pred":"compound","subj":"T331","obj":"T332"},{"id":"R254","pred":"compound","subj":"T332","obj":"T333"},{"id":"R255","pred":"dobj","subj":"T333","obj":"T329"},{"id":"R256","pred":"oprd","subj":"T334","obj":"T323"},{"id":"R257","pred":"prep","subj":"T335","obj":"T334"},{"id":"R258","pred":"pobj","subj":"T336","obj":"T335"},{"id":"R259","pred":"punct","subj":"T337","obj":"T323"},{"id":"R260","pred":"nsubj","subj":"T338","obj":"T339"},{"id":"R261","pred":"ROOT","subj":"T339","obj":"T339"},{"id":"R263","pred":"det","subj":"T341","obj":"T343"},{"id":"R264","pred":"amod","subj":"T342","obj":"T343"},{"id":"R266","pred":"prep","subj":"T344","obj":"T343"},{"id":"R267","pred":"pobj","subj":"T345","obj":"T344"}],"text":"e role of HOIP in CD40 signaling, we used somatic cell gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 a"}

{"project":"GO-BP","denotations":[{"id":"T762","span":{"begin":23,"end":32},"obj":"http://purl.obolibrary.org/obo/GO_0023052"}],"text":"e role of HOIP in CD40 signaling, we used somatic cell gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 a"}

{"project":"GO-CC","denotations":[{"id":"T802","span":{"begin":50,"end":54},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T803","span":{"begin":90,"end":94},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"e role of HOIP in CD40 signaling, we used somatic cell gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 a"}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T724","span":{"begin":10,"end":14},"obj":"Q96EP0"},{"id":"T725","span":{"begin":18,"end":22},"obj":"P25942"},{"id":"T726","span":{"begin":114,"end":118},"obj":"Q96EP0"},{"id":"T727","span":{"begin":138,"end":142},"obj":"P25942"},{"id":"T728","span":{"begin":167,"end":171},"obj":"P33681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"e role of HOIP in CD40 signaling, we used somatic cell gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 a"}

{"project":"test2","denotations":[{"id":"T62","span":{"begin":10,"end":14},"obj":"Protein"},{"id":"T63","span":{"begin":18,"end":22},"obj":"Protein"},{"id":"T64","span":{"begin":101,"end":110},"obj":"Negative_regulation"},{"id":"T65","span":{"begin":114,"end":118},"obj":"Protein"},{"id":"T66","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T67","span":{"begin":143,"end":150},"obj":"Positive_regulation"},{"id":"T68","span":{"begin":151,"end":163},"obj":"Positive_regulation"},{"id":"T69","span":{"begin":167,"end":171},"obj":"Protein"}],"relations":[{"id":"R30","pred":"themeOf","subj":"T65","obj":"T64"},{"id":"R31","pred":"causeOf","subj":"T66","obj":"T67"},{"id":"R32","pred":"themeOf","subj":"T68","obj":"T67"},{"id":"R33","pred":"themeOf","subj":"T69","obj":"T68"}],"text":"e role of HOIP in CD40 signaling, we used somatic cell gene targeting to generate mouse B cell lines deficient in HOIP. We found that the CD40-induced upregulation of CD80 a"}