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PMC:3148254 / 1164-1337 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T102 10-14 Protein denotes HOIP
T103 18-22 Protein denotes CD40
T104 101-110 Negative_regulation denotes deficient
T105 114-118 Protein denotes HOIP
T106 138-142 Protein denotes CD40
T107 143-150 Positive_regulation denotes induced
T108 151-163 Positive_regulation denotes upregulation
T109 167-171 Protein denotes CD80
R48 T105 T104 themeOf HOIP,deficient
R49 T106 T107 causeOf CD40,induced
R51 T108 T107 themeOf upregulation,induced
R52 T109 T108 themeOf CD80,upregulation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T919 10-14 Protein denotes HOIP
T920 18-22 Protein denotes CD40
T921 138-142 Protein denotes CD40
T922 167-171 Protein denotes CD80

events-check-again

Id Subject Object Predicate Lexical cue
T962 10-14 Protein denotes HOIP
T963 18-22 Protein denotes CD40
T964 101-110 Negative_regulation denotes deficient
T965 114-118 Protein denotes HOIP
T966 138-142 Protein denotes CD40
T967 143-150 Positive_regulation denotes induced
T968 151-163 Positive_regulation denotes upregulation
T969 167-171 Protein denotes CD80
R690 T965 T964 themeOf HOIP,deficient
R691 T966 T967 causeOf CD40,induced
R693 T968 T967 themeOf upregulation,induced
R694 T969 T968 themeOf CD80,upregulation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T598 2-6 NN denotes role
T599 7-9 IN denotes of
T600 10-14 NN denotes HOIP
T601 15-17 IN denotes in
T602 18-22 NN denotes CD40
T603 23-32 NN denotes signaling
T604 32-33 -COMMA- denotes ,
T605 34-36 PRP denotes we
T606 37-41 VB denotes used
T607 42-49 JJ denotes somatic
T608 50-54 NN denotes cell
T609 55-59 NN denotes gene
T610 60-69 VB denotes targeting
T611 70-72 TO denotes to
T612 73-81 VB denotes generate
T613 82-87 NN denotes mouse
T614 88-89 NN denotes B
T615 90-94 NN denotes cell
T616 95-100 NN denotes lines
T617 101-110 JJ denotes deficient
T618 111-113 IN denotes in
T619 114-118 NN denotes HOIP
T620 120-122 PRP denotes We
T621 123-128 VB denotes found
T622 129-133 IN denotes that
T623 134-137 DT denotes the
T624 138-150 JJ denotes CD40-induced
T625 151-163 NN denotes upregulation
T626 164-166 IN denotes of
T627 167-171 NN denotes CD80
R516 T598 T599 arg1Of role,of
R517 T598 T601 arg1Of role,in
R518 T600 T599 arg2Of HOIP,of
R519 T603 T601 arg2Of signaling,in
R520 T603 T602 arg1Of signaling,CD40
R521 T605 T606 arg1Of we,used
R523 T606 T604 arg1Of used,","
R524 T606 T611 modOf used,to
R525 T609 T606 arg2Of gene,used
R526 T609 T607 arg1Of gene,somatic
R527 T609 T608 arg1Of gene,cell
R528 T610 T606 arg3Of targeting,used
R529 T612 T611 arg1Of generate,to
R530 T616 T612 arg2Of lines,generate
R531 T616 T613 arg1Of lines,mouse
R532 T616 T614 arg1Of lines,B
R533 T616 T615 arg1Of lines,cell
R534 T616 T617 arg1Of lines,deficient
R535 T617 T618 arg1Of deficient,in
R536 T619 T618 arg2Of HOIP,in
R537 T620 T621 arg1Of We,found
R538 T625 T623 arg1Of upregulation,the
R539 T625 T624 arg1Of upregulation,CD40-induced
R540 T625 T626 arg1Of upregulation,of
R542 T627 T626 arg2Of CD80,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T315 2-6 NN denotes role
T316 7-9 IN denotes of
T317 10-14 NNP denotes HOIP
T318 15-17 IN denotes in
T319 18-22 NNP denotes CD40
T320 23-32 VBG denotes signaling
T321 32-33 , denotes ,
T322 34-36 PRP denotes we
T323 37-41 VBD denotes used
T324 42-49 JJ denotes somatic
T325 50-54 NN denotes cell
T326 55-59 NN denotes gene
T327 60-69 VBG denotes targeting
T328 70-72 TO denotes to
T329 73-81 VB denotes generate
T330 82-87 NN denotes mouse
T331 88-89 NNP denotes B
T332 90-94 NN denotes cell
T333 95-100 NNS denotes lines
T334 101-110 VBP denotes deficient
T335 111-113 IN denotes in
T336 114-118 NNP denotes HOIP
T337 118-119 . denotes .
T338 120-122 PRP denotes We
T339 123-128 VBD denotes found
T340 129-133 IN denotes that
T341 134-137 DT denotes the
T342 138-150 JJ denotes CD40-induced
T343 151-163 NN denotes upregulation
T344 164-166 IN denotes of
T345 167-171 NNP denotes CD80
R238 T316 T315 prep of,role
R239 T317 T316 pobj HOIP,of
R240 T318 T315 prep in,role
R241 T319 T318 pobj CD40,in
R242 T320 T315 acl signaling,role
R243 T321 T323 punct ",",used
R244 T322 T323 nsubj we,used
R245 T323 T323 ROOT used,used
R246 T324 T326 compound somatic,gene
R247 T325 T326 compound cell,gene
R248 T326 T323 dobj gene,used
R249 T327 T326 acl targeting,gene
R250 T328 T329 aux to,generate
R251 T329 T327 xcomp generate,targeting
R252 T330 T333 compound mouse,lines
R253 T331 T332 compound B,cell
R254 T332 T333 compound cell,lines
R255 T333 T329 dobj lines,generate
R256 T334 T323 oprd deficient,used
R257 T335 T334 prep in,deficient
R258 T336 T335 pobj HOIP,in
R259 T337 T323 punct .,used
R260 T338 T339 nsubj We,found
R261 T339 T339 ROOT found,found
R263 T341 T343 det the,upregulation
R264 T342 T343 amod CD40-induced,upregulation
R266 T344 T343 prep of,upregulation
R267 T345 T344 pobj CD80,of

GO-BP

Id Subject Object Predicate Lexical cue
T762 23-32 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T802 50-54 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T803 90-94 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T724 10-14 Q96EP0 denotes HOIP
T725 18-22 P25942 denotes CD40
T726 114-118 Q96EP0 denotes HOIP
T727 138-142 P25942 denotes CD40
T728 167-171 P33681 denotes CD80

test2

Id Subject Object Predicate Lexical cue
T62 10-14 Protein denotes HOIP
T63 18-22 Protein denotes CD40
T64 101-110 Negative_regulation denotes deficient
T65 114-118 Protein denotes HOIP
T66 138-142 Protein denotes CD40
T67 143-150 Positive_regulation denotes induced
T68 151-163 Positive_regulation denotes upregulation
T69 167-171 Protein denotes CD80
R30 T65 T64 themeOf HOIP,deficient
R31 T66 T67 causeOf CD40,induced
R32 T68 T67 themeOf upregulation,induced
R33 T69 T68 themeOf CD80,upregulation