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PMC:3148254 / 1022-1273 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T97 23-27 Protein denotes HOIP
T98 36-54 Entity denotes cytoplasmic domain
T99 58-62 Protein denotes CD40
T100 80-84 Protein denotes HOIP
T101 103-107 Protein denotes CD40
T102 152-156 Protein denotes HOIP
T103 160-164 Protein denotes CD40
R46 T98 T99 partOf cytoplasmic domain,CD40

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T911 23-27 Protein denotes HOIP
T912 58-62 Protein denotes CD40
T913 103-107 Protein denotes CD40
T914 48-54 Entity denotes domain
T919 152-156 Protein denotes HOIP
T920 160-164 Protein denotes CD40
R663 T912 T914 partOf CD40,domain

events-check-again

Id Subject Object Predicate Lexical cue
T957 23-27 Protein denotes HOIP
T958 36-54 Entity denotes cytoplasmic domain
T959 58-62 Protein denotes CD40
T960 80-84 Protein denotes HOIP
T961 103-107 Protein denotes CD40
T962 152-156 Protein denotes HOIP
T963 160-164 Protein denotes CD40
R688 T958 T959 partOf cytoplasmic domain,CD40

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T573 14-21 NN denotes protein
T574 22-23 -LRB- denotes (
T575 23-27 NN denotes HOIP
T576 27-28 -RRB- denotes )
T577 29-31 TO denotes to
T578 32-35 DT denotes the
T579 36-47 JJ denotes cytoplasmic
T580 48-54 NN denotes domain
T581 55-57 IN denotes of
T582 58-62 NN denotes CD40
T583 62-63 -COMMA- denotes ,
T584 64-74 VB denotes suggesting
T585 75-79 IN denotes that
T586 80-84 NN denotes HOIP
T587 85-88 VB denotes has
T588 89-90 DT denotes a
T589 91-95 NN denotes role
T590 96-98 IN denotes in
T591 99-102 DT denotes the
T592 103-107 NN denotes CD40
T593 108-117 NN denotes signaling
T594 118-125 NN denotes pathway
T595 127-129 TO denotes To
T596 130-139 VB denotes determine
T597 140-143 DT denotes the
T598 144-148 NN denotes role
T599 149-151 IN denotes of
T600 152-156 NN denotes HOIP
T601 157-159 IN denotes in
T602 160-164 NN denotes CD40
T603 165-174 NN denotes signaling
T604 174-175 -COMMA- denotes ,
T605 176-178 PRP denotes we
T606 179-183 VB denotes used
T607 184-191 JJ denotes somatic
T608 192-196 NN denotes cell
T609 197-201 NN denotes gene
T610 202-211 VB denotes targeting
T611 212-214 TO denotes to
T612 215-223 VB denotes generate
T613 224-229 NN denotes mouse
T614 230-231 NN denotes B
T615 232-236 NN denotes cell
T616 237-242 NN denotes lines
R494 T573 T574 arg1Of protein,(
R495 T575 T574 arg2Of HOIP,(
R496 T576 T574 arg3Of ),(
R497 T580 T577 arg2Of domain,to
R498 T580 T578 arg1Of domain,the
R499 T580 T579 arg1Of domain,cytoplasmic
R500 T580 T581 arg1Of domain,of
R501 T582 T581 arg2Of CD40,of
R503 T586 T587 arg1Of HOIP,has
R504 T587 T584 arg2Of has,suggesting
R505 T587 T585 arg1Of has,that
R506 T587 T590 arg1Of has,in
R507 T589 T587 arg2Of role,has
R508 T589 T588 arg1Of role,a
R509 T594 T590 arg2Of pathway,in
R510 T594 T591 arg1Of pathway,the
R511 T594 T592 arg1Of pathway,CD40
R512 T594 T593 arg1Of pathway,signaling
R513 T596 T595 arg1Of determine,To
R514 T598 T596 arg2Of role,determine
R515 T598 T597 arg1Of role,the
R516 T598 T599 arg1Of role,of
R517 T598 T601 arg1Of role,in
R518 T600 T599 arg2Of HOIP,of
R519 T603 T601 arg2Of signaling,in
R520 T603 T602 arg1Of signaling,CD40
R521 T605 T606 arg1Of we,used
R522 T606 T595 modOf used,To
R523 T606 T604 arg1Of used,","
R524 T606 T611 modOf used,to
R525 T609 T606 arg2Of gene,used
R526 T609 T607 arg1Of gene,somatic
R527 T609 T608 arg1Of gene,cell
R528 T610 T606 arg3Of targeting,used
R529 T612 T611 arg1Of generate,to
R530 T616 T612 arg2Of lines,generate
R531 T616 T613 arg1Of lines,mouse
R532 T616 T614 arg1Of lines,B
R533 T616 T615 arg1Of lines,cell

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T289 14-21 NN denotes protein
T290 22-23 -LRB- denotes (
T291 23-27 NNP denotes HOIP
T292 27-28 -RRB- denotes )
T293 29-31 TO denotes to
T294 32-35 DT denotes the
T295 36-47 JJ denotes cytoplasmic
T296 48-54 NN denotes domain
T297 55-57 IN denotes of
T298 58-62 NNP denotes CD40
T299 62-63 , denotes ,
T300 64-74 VBG denotes suggesting
T301 75-79 IN denotes that
T302 80-84 NNP denotes HOIP
T303 85-88 VBZ denotes has
T304 89-90 DT denotes a
T305 91-95 NN denotes role
T306 96-98 IN denotes in
T307 99-102 DT denotes the
T308 103-107 NNP denotes CD40
T309 108-117 VBG denotes signaling
T310 118-125 NN denotes pathway
T311 125-126 . denotes .
T312 127-129 TO denotes To
T313 130-139 VB denotes determine
T314 140-143 DT denotes the
T315 144-148 NN denotes role
T316 149-151 IN denotes of
T317 152-156 NNP denotes HOIP
T318 157-159 IN denotes in
T319 160-164 NNP denotes CD40
T320 165-174 VBG denotes signaling
T321 174-175 , denotes ,
T322 176-178 PRP denotes we
T323 179-183 VBD denotes used
T324 184-191 JJ denotes somatic
T325 192-196 NN denotes cell
T326 197-201 NN denotes gene
T327 202-211 VBG denotes targeting
T328 212-214 TO denotes to
T329 215-223 VB denotes generate
T330 224-229 NN denotes mouse
T331 230-231 NNP denotes B
T332 232-236 NN denotes cell
T333 237-242 NNS denotes lines
R212 T290 T291 punct (,HOIP
R213 T291 T289 appos HOIP,protein
R216 T294 T296 det the,domain
R217 T295 T296 amod cytoplasmic,domain
R218 T296 T293 pobj domain,to
R219 T297 T296 prep of,domain
R220 T298 T297 pobj CD40,of
R223 T301 T303 mark that,has
R224 T302 T303 nsubj HOIP,has
R225 T303 T300 ccomp has,suggesting
R226 T304 T305 det a,role
R227 T305 T303 dobj role,has
R228 T306 T305 prep in,role
R229 T307 T310 det the,pathway
R230 T308 T310 nmod CD40,pathway
R231 T309 T310 amod signaling,pathway
R232 T310 T306 pobj pathway,in
R234 T312 T313 aux To,determine
R235 T313 T323 advcl determine,used
R236 T314 T315 det the,role
R237 T315 T313 dobj role,determine
R238 T316 T315 prep of,role
R239 T317 T316 pobj HOIP,of
R240 T318 T315 prep in,role
R241 T319 T318 pobj CD40,in
R242 T320 T315 acl signaling,role
R243 T321 T323 punct ",",used
R244 T322 T323 nsubj we,used
R245 T323 T323 ROOT used,used
R246 T324 T326 compound somatic,gene
R247 T325 T326 compound cell,gene
R248 T326 T323 dobj gene,used
R249 T327 T326 acl targeting,gene
R250 T328 T329 aux to,generate
R251 T329 T327 xcomp generate,targeting
R252 T330 T333 compound mouse,lines
R253 T331 T332 compound B,cell
R254 T332 T333 compound cell,lines
R255 T333 T329 dobj lines,generate

GO-BP

Id Subject Object Predicate Lexical cue
T761 108-117 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T762 165-174 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T786 103-125 http://purl.obolibrary.org/obo/GO_0023035 denotes CD40 signaling pathway
T788 103-125 http://purl.obolibrary.org/obo/GO_2000348 denotes CD40 signaling pathway
T790 108-125 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathway

GO-CC

Id Subject Object Predicate Lexical cue
T802 192-196 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T803 232-236 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T720 23-27 Q96EP0 denotes HOIP
T721 58-62 P25942 denotes CD40
T722 80-84 Q96EP0 denotes HOIP
T723 103-107 P25942 denotes CD40
T724 152-156 Q96EP0 denotes HOIP
T725 160-164 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue
T57 23-27 Protein denotes HOIP
T58 36-54 Entity denotes cytoplasmic domain
T59 58-62 Protein denotes CD40
T60 80-84 Protein denotes HOIP
T61 103-107 Protein denotes CD40
T62 152-156 Protein denotes HOIP
T63 160-164 Protein denotes CD40
R29 T58 T59 partOf cytoplasmic domain,CD40