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PMC:314463 / 62261-63145 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T13570 0-4 NN denotes Fate
T13571 5-12 VBG denotes mapping
T13572 4-5 HYPH denotes -
T13573 13-16 DT denotes the
T13574 33-41 NN denotes frontier
T13575 17-24 JJ denotes lateral
T13576 25-32 JJ denotes somitic
T13577 41-214 sentence denotes The Hoxb6-Cre transgene described by Kuehn and colleagues (Lowe et al. 2000) is expressed in the lateral plate but not the somitic mesoderm of the trunk, beginning at E9.5.
T13578 42-45 DT denotes The
T13579 56-65 NN denotes transgene
T13580 46-51 NN denotes Hoxb6
T13581 52-55 NN denotes Cre
T13582 51-52 HYPH denotes -
T13583 122-131 VBN denotes expressed
T13584 66-75 VBN denotes described
T13585 76-78 IN denotes by
T13586 79-84 NN denotes Kuehn
T13587 85-88 CC denotes and
T13588 89-99 NNS denotes colleagues
T13589 100-101 -LRB- denotes (
T13590 101-105 NNP denotes Lowe
T13591 106-108 FW denotes et
T13592 109-112 FW denotes al.
T13593 113-117 CD denotes 2000
T13594 117-118 -RRB- denotes )
T13595 119-121 VBZ denotes is
T13596 132-134 IN denotes in
T13597 135-138 DT denotes the
T13598 147-152 NN denotes plate
T13599 139-146 JJ denotes lateral
T13600 153-156 CC denotes but
T13601 157-160 RB denotes not
T13602 161-164 DT denotes the
T13603 173-181 NN denotes mesoderm
T13604 165-172 JJ denotes somitic
T13605 182-184 IN denotes of
T13606 185-188 DT denotes the
T13607 189-194 NN denotes trunk
T13608 194-196 , denotes ,
T13609 196-205 VBG denotes beginning
T13610 206-208 IN denotes at
T13611 209-213 NN denotes E9.5
T13612 213-214 . denotes .
T13613 214-341 sentence denotes Animals doubly heterozygous for this transgene and the R26R reporter gene were used as a source of whole skin at P1.5 or P4.5.
T13614 215-222 NNS denotes Animals
T13615 294-298 VBN denotes used
T13616 223-229 RB denotes doubly
T13617 230-242 JJ denotes heterozygous
T13618 243-246 IN denotes for
T13619 247-251 DT denotes this
T13620 252-261 NN denotes transgene
T13621 262-265 CC denotes and
T13622 266-269 DT denotes the
T13623 284-288 NN denotes gene
T13624 270-274 NN denotes R26R
T13625 275-283 NN denotes reporter
T13626 289-293 VBD denotes were
T13627 299-301 IN denotes as
T13628 302-303 DT denotes a
T13629 304-310 NN denotes source
T13630 311-313 IN denotes of
T13631 314-319 JJ denotes whole
T13632 320-324 NN denotes skin
T13633 325-327 IN denotes at
T13634 328-332 NN denotes P1.5
T13635 333-335 CC denotes or
T13636 336-340 NN denotes P4.5
T13637 340-341 . denotes .
T13638 341-539 sentence denotes Skin sections parallel to the dorsoventral axis were prepared with a single incision along the ventral midline and stained for β-galactosidase activity using standard protocols at room temperature.
T13639 342-346 NN denotes Skin
T13640 347-355 NNS denotes sections
T13641 395-403 VBN denotes prepared
T13642 356-364 JJ denotes parallel
T13643 365-367 IN denotes to
T13644 368-371 DT denotes the
T13645 385-389 NN denotes axis
T13646 372-384 JJ denotes dorsoventral
T13647 390-394 VBD denotes were
T13648 404-408 IN denotes with
T13649 409-410 DT denotes a
T13650 418-426 NN denotes incision
T13651 411-417 JJ denotes single
T13652 427-432 IN denotes along
T13653 433-436 DT denotes the
T13654 445-452 NN denotes midline
T13655 437-444 JJ denotes ventral
T13656 453-456 CC denotes and
T13657 457-464 VBN denotes stained
T13658 465-468 IN denotes for
T13659 469-470 NN denotes β
T13660 471-484 NN denotes galactosidase
T13661 470-471 HYPH denotes -
T13662 485-493 NN denotes activity
T13663 494-499 VBG denotes using
T13664 500-508 JJ denotes standard
T13665 509-518 NNS denotes protocols
T13666 519-521 IN denotes at
T13667 522-526 NN denotes room
T13668 527-538 NN denotes temperature
T13669 538-539 . denotes .
T13670 539-622 sentence denotes The P1.5 sample was stained overnight and the P4.5 samples were stained for 5.5 h.
T13671 540-543 DT denotes The
T13672 549-555 NN denotes sample
T13673 544-548 NN denotes P1.5
T13674 560-567 VBN denotes stained
T13675 556-559 VBD denotes was
T13676 568-577 RB denotes overnight
T13677 578-581 CC denotes and
T13678 582-585 DT denotes the
T13679 591-598 NNS denotes samples
T13680 586-590 NN denotes P4.5
T13681 604-611 VBN denotes stained
T13682 599-603 VBD denotes were
T13683 612-615 IN denotes for
T13684 616-619 CD denotes 5.5
T13685 620-621 NN denotes h
T13686 621-622 . denotes .
T13687 622-706 sentence denotes Similar nonstained skin sections were prepared from animals carrying the at allele.
T13688 623-630 JJ denotes Similar
T13689 647-655 NNS denotes sections
T13690 631-641 JJ denotes nonstained
T13691 642-646 NN denotes skin
T13692 661-669 VBN denotes prepared
T13693 656-660 VBD denotes were
T13694 670-674 IN denotes from
T13695 675-682 NNS denotes animals
T13696 683-691 VBG denotes carrying
T13697 692-695 DT denotes the
T13698 699-705 NN denotes allele
T13699 696-698 NN denotes at
T13700 705-706 . denotes .
T13701 706-884 sentence denotes Images of the different skin fragments were aligned and scaled, and the relative position of the somite–lateral plate and the pigmentation boundaries were measured using ImageJ.
T13702 707-713 NNS denotes Images
T13703 751-758 VBN denotes aligned
T13704 714-716 IN denotes of
T13705 717-720 DT denotes the
T13706 736-745 NNS denotes fragments
T13707 721-730 JJ denotes different
T13708 731-735 NN denotes skin
T13709 746-750 VBD denotes were
T13710 759-762 CC denotes and
T13711 763-769 VBN denotes scaled
T13712 769-771 , denotes ,
T13713 771-774 CC denotes and
T13714 775-778 DT denotes the
T13715 788-796 NN denotes position
T13716 779-787 JJ denotes relative
T13717 862-870 VBN denotes measured
T13718 797-799 IN denotes of
T13719 800-803 DT denotes the
T13720 819-824 NN denotes plate
T13721 804-810 NN denotes somite
T13722 811-818 JJ denotes lateral
T13723 810-811 HYPH denotes –
T13724 825-828 CC denotes and
T13725 829-832 DT denotes the
T13726 846-856 NNS denotes boundaries
T13727 833-845 NN denotes pigmentation
T13728 857-861 VBD denotes were
T13729 871-876 VBG denotes using
T13730 877-883 NN denotes ImageJ
T13731 883-884 . denotes .
R9498 T13570 T13571 dep Fate,mapping
R9499 T13572 T13571 punct -,mapping
R9500 T13573 T13574 det the,frontier
R9501 T13574 T13571 dobj frontier,mapping
R9502 T13575 T13574 amod lateral,frontier
R9503 T13576 T13574 amod somitic,frontier
R9504 T13578 T13579 det The,transgene
R9505 T13579 T13583 nsubjpass transgene,expressed
R9506 T13580 T13581 compound Hoxb6,Cre
R9507 T13581 T13579 compound Cre,transgene
R9508 T13582 T13581 punct -,Cre
R9509 T13584 T13579 acl described,transgene
R9510 T13585 T13584 agent by,described
R9511 T13586 T13585 pobj Kuehn,by
R9512 T13587 T13586 cc and,Kuehn
R9513 T13588 T13586 conj colleagues,Kuehn
R9514 T13589 T13590 punct (,Lowe
R9515 T13590 T13584 meta Lowe,described
R9516 T13591 T13590 nmod et,Lowe
R9517 T13592 T13590 nmod al.,Lowe
R9518 T13593 T13590 nummod 2000,Lowe
R9519 T13594 T13590 punct ),Lowe
R9520 T13595 T13583 auxpass is,expressed
R9521 T13596 T13583 prep in,expressed
R9522 T13597 T13598 det the,plate
R9523 T13598 T13596 pobj plate,in
R9524 T13599 T13598 amod lateral,plate
R9525 T13600 T13598 cc but,plate
R9526 T13601 T13600 neg not,but
R9527 T13602 T13603 det the,mesoderm
R9528 T13603 T13598 conj mesoderm,plate
R9529 T13604 T13603 amod somitic,mesoderm
R9530 T13605 T13598 prep of,plate
R9531 T13606 T13607 det the,trunk
R9532 T13607 T13605 pobj trunk,of
R9533 T13608 T13583 punct ", ",expressed
R9534 T13609 T13583 advcl beginning,expressed
R9535 T13610 T13609 prep at,beginning
R9536 T13611 T13610 pobj E9.5,at
R9537 T13612 T13583 punct .,expressed
R9538 T13614 T13615 nsubjpass Animals,used
R9539 T13616 T13617 advmod doubly,heterozygous
R9540 T13617 T13614 amod heterozygous,Animals
R9541 T13618 T13617 prep for,heterozygous
R9542 T13619 T13620 det this,transgene
R9543 T13620 T13618 pobj transgene,for
R9544 T13621 T13620 cc and,transgene
R9545 T13622 T13623 det the,gene
R9546 T13623 T13620 conj gene,transgene
R9547 T13624 T13623 compound R26R,gene
R9548 T13625 T13623 compound reporter,gene
R9549 T13626 T13615 auxpass were,used
R9550 T13627 T13615 prep as,used
R9551 T13628 T13629 det a,source
R9552 T13629 T13627 pobj source,as
R9553 T13630 T13629 prep of,source
R9554 T13631 T13632 amod whole,skin
R9555 T13632 T13630 pobj skin,of
R9556 T13633 T13615 prep at,used
R9557 T13634 T13633 pobj P1.5,at
R9558 T13635 T13634 cc or,P1.5
R9559 T13636 T13634 conj P4.5,P1.5
R9560 T13637 T13615 punct .,used
R9561 T13639 T13640 compound Skin,sections
R9562 T13640 T13641 nsubjpass sections,prepared
R9563 T13642 T13640 amod parallel,sections
R9564 T13643 T13642 prep to,parallel
R9565 T13644 T13645 det the,axis
R9566 T13645 T13643 pobj axis,to
R9567 T13646 T13645 amod dorsoventral,axis
R9568 T13647 T13641 auxpass were,prepared
R9569 T13648 T13641 prep with,prepared
R9570 T13649 T13650 det a,incision
R9571 T13650 T13648 pobj incision,with
R9572 T13651 T13650 amod single,incision
R9573 T13652 T13650 prep along,incision
R9574 T13653 T13654 det the,midline
R9575 T13654 T13652 pobj midline,along
R9576 T13655 T13654 amod ventral,midline
R9577 T13656 T13641 cc and,prepared
R9578 T13657 T13641 conj stained,prepared
R9579 T13658 T13657 prep for,stained
R9580 T13659 T13660 compound β,galactosidase
R9581 T13660 T13662 compound galactosidase,activity
R9582 T13661 T13660 punct -,galactosidase
R9583 T13662 T13658 pobj activity,for
R9584 T13663 T13657 advcl using,stained
R9585 T13664 T13665 amod standard,protocols
R9586 T13665 T13663 dobj protocols,using
R9587 T13666 T13657 prep at,stained
R9588 T13667 T13668 compound room,temperature
R9589 T13668 T13666 pobj temperature,at
R9590 T13669 T13641 punct .,prepared
R9591 T13671 T13672 det The,sample
R9592 T13672 T13674 nsubjpass sample,stained
R9593 T13673 T13672 compound P1.5,sample
R9594 T13675 T13674 auxpass was,stained
R9595 T13676 T13674 advmod overnight,stained
R9596 T13677 T13674 cc and,stained
R9597 T13678 T13679 det the,samples
R9598 T13679 T13681 nsubjpass samples,stained
R9599 T13680 T13679 compound P4.5,samples
R9600 T13681 T13674 conj stained,stained
R9601 T13682 T13681 auxpass were,stained
R9602 T13683 T13681 prep for,stained
R9603 T13684 T13685 nummod 5.5,h
R9604 T13685 T13683 pobj h,for
R9605 T13686 T13681 punct .,stained
R9606 T13688 T13689 amod Similar,sections
R9607 T13689 T13692 nsubjpass sections,prepared
R9608 T13690 T13689 amod nonstained,sections
R9609 T13691 T13689 compound skin,sections
R9610 T13693 T13692 auxpass were,prepared
R9611 T13694 T13692 prep from,prepared
R9612 T13695 T13694 pobj animals,from
R9613 T13696 T13695 acl carrying,animals
R9614 T13697 T13698 det the,allele
R9615 T13698 T13696 dobj allele,carrying
R9616 T13699 T13698 compound at,allele
R9617 T13700 T13692 punct .,prepared
R9618 T13702 T13703 nsubjpass Images,aligned
R9619 T13704 T13702 prep of,Images
R9620 T13705 T13706 det the,fragments
R9621 T13706 T13704 pobj fragments,of
R9622 T13707 T13706 amod different,fragments
R9623 T13708 T13706 compound skin,fragments
R9624 T13709 T13703 auxpass were,aligned
R9625 T13710 T13703 cc and,aligned
R9626 T13711 T13703 conj scaled,aligned
R9627 T13712 T13703 punct ", ",aligned
R9628 T13713 T13703 cc and,aligned
R9629 T13714 T13715 det the,position
R9630 T13715 T13717 nsubjpass position,measured
R9631 T13716 T13715 amod relative,position
R9632 T13717 T13703 conj measured,aligned
R9633 T13718 T13715 prep of,position
R9634 T13719 T13720 det the,plate
R9635 T13720 T13718 pobj plate,of
R9636 T13721 T13722 npadvmod somite,lateral
R9637 T13722 T13720 amod lateral,plate
R9638 T13723 T13722 punct –,lateral
R9639 T13724 T13720 cc and,plate
R9640 T13725 T13726 det the,boundaries
R9641 T13726 T13720 conj boundaries,plate
R9642 T13727 T13726 compound pigmentation,boundaries
R9643 T13728 T13717 auxpass were,measured
R9644 T13729 T13717 advcl using,measured
R9645 T13730 T13729 dobj ImageJ,using
R9646 T13731 T13717 punct .,measured

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13532 25-41 UBERON:0015178 denotes somitic frontier
T13533 46-51 PR:000008703 denotes Hoxb6
T13534 56-65 SO:0000902 denotes transgene
T13535 122-131 GO:0010467 denotes expressed
T13536 139-152 _FRAGMENT denotes lateral plate
T13537 173-181 UBERON:0003081 denotes mesoderm
T13538 165-181 UBERON:0003077 denotes somitic mesoderm
T13539 189-194 UBERON:0002100 denotes trunk
T13540 215-222 NCBITaxon:33208 denotes Animals
T13541 252-261 SO:0000902 denotes transgene
T13542 284-288 SO:0000704 denotes gene
T13543 437-452 UBERON:0009571 denotes ventral midline
T13544 675-682 NCBITaxon:33208 denotes animals
T13545 699-705 SO:0001023 denotes allele
T13546 804-810 UBERON:0002329 denotes somite
T13547 811-824 UBERON:0003081 denotes lateral plate
R9496 T13537 T13536 _lexicallyChainedTo mesoderm,lateral plate

2_test

Id Subject Object Predicate Lexical cue
14737183-10686603-84903086 113-117 10686603 denotes 2000
T70459 113-117 10686603 denotes 2000

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13548 25-41 UBERON:0015178 denotes somitic frontier
T13549 46-51 PR_EXT:000008703 denotes Hoxb6
T13550 56-65 SO_EXT:0000902 denotes transgene
T13551 122-131 GO:0010467 denotes expressed
T13552 139-152 _FRAGMENT denotes lateral plate
T13553 173-181 UBERON:0003081 denotes mesoderm
T13554 165-181 UBERON:0003077 denotes somitic mesoderm
T13555 189-194 UBERON:0002100 denotes trunk
T13556 215-222 NCBITaxon:33208 denotes Animals
T13557 252-261 SO_EXT:0000902 denotes transgene
T13558 284-288 SO_EXT:0000704 denotes gene
T13559 320-324 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T13560 342-346 UBERON_EXT:zone_of_skin_or_skin_of_body denotes Skin
T13561 437-452 UBERON:0009571 denotes ventral midline
T13562 469-484 GO_EXT:0004565 denotes β-galactosidase
T13563 642-646 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T13564 675-682 NCBITaxon:33208 denotes animals
T13565 699-705 SO_EXT:0001023 denotes allele
T13566 731-735 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T13567 804-810 UBERON:0002329 denotes somite
T13568 811-824 UBERON:0003081 denotes lateral plate
T13569 833-845 GO_PATO_EXT:biological_pigmentation_process_or_quality denotes pigmentation
R9497 T13553 T13552 _lexicallyChainedTo mesoderm,lateral plate