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PMC:314463 / 60587-61355 JSONTXT

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Id Subject Object Predicate Lexical cue
T13135 0-2 FW denotes In
T13136 3-7 FW denotes situ
T13137 8-21 NN denotes hybridization
T13138 26-33 VBN denotes carried
T13139 22-25 VBD denotes was
T13140 34-37 RP denotes out
T13141 38-40 IN denotes on
T13142 41-43 CD denotes 12
T13143 44-46 NN denotes μm
T13144 43-44 HYPH denotes -
T13145 56-64 NNS denotes sections
T13146 47-55 NN denotes paraffin
T13147 65-70 VBG denotes using
T13148 71-82 NN denotes digoxigenin
T13149 83-90 VBN denotes labeled
T13150 82-83 HYPH denotes -
T13151 95-101 NNS denotes probes
T13152 91-94 NN denotes RNA
T13153 102-103 -LRB- denotes (
T13154 109-120 NNP denotes Diagnostics
T13155 103-108 NNP denotes Roche
T13156 120-122 , denotes ,
T13157 122-134 NNP denotes Indianapolis
T13158 134-136 , denotes ,
T13159 136-143 NNP denotes Indiana
T13160 143-145 , denotes ,
T13161 145-151 NNP denotes United
T13162 152-158 NNP denotes States
T13163 158-159 -RRB- denotes )
T13164 160-169 VBG denotes according
T13165 170-172 IN denotes to
T13166 173-181 JJ denotes standard
T13167 182-191 NNS denotes protocols
T13168 192-193 -LRB- denotes (
T13169 193-202 NNP denotes Wilkinson
T13170 203-206 CC denotes and
T13171 207-212 NNP denotes Nieto
T13172 213-217 CD denotes 1993
T13173 217-218 -RRB- denotes )
T13174 218-219 . denotes .
T13175 219-301 sentence denotes Embryos and postnatal skin samples were obtained from intercrosses of deH/+ mice.
T13176 220-227 NNS denotes Embryos
T13177 260-268 VBN denotes obtained
T13178 228-231 CC denotes and
T13179 232-241 JJ denotes postnatal
T13180 247-254 NNS denotes samples
T13181 242-246 NN denotes skin
T13182 255-259 VBD denotes were
T13183 269-273 IN denotes from
T13184 274-286 NNS denotes intercrosses
T13185 287-289 IN denotes of
T13186 290-293 NN denotes deH
T13187 296-300 NNS denotes mice
T13188 293-294 HYPH denotes /
T13189 294-295 SYM denotes +
T13190 300-301 . denotes .
T13191 301-432 sentence denotes Embryos E13.5 or younger were fixed for 24 h; those older than E13.5 and postnatal skin were fixed for 36–48 h prior to embedding.
T13192 302-309 NNS denotes Embryos
T13193 332-337 VBN denotes fixed
T13194 310-315 NN denotes E13.5
T13195 316-318 CC denotes or
T13196 319-326 JJR denotes younger
T13197 327-331 VBD denotes were
T13198 395-400 VBN denotes fixed
T13199 338-341 IN denotes for
T13200 342-344 CD denotes 24
T13201 345-346 NN denotes h
T13202 346-347 : denotes ;
T13203 348-353 DT denotes those
T13204 354-359 JJR denotes older
T13205 360-364 IN denotes than
T13206 365-370 NN denotes E13.5
T13207 371-374 CC denotes and
T13208 375-384 JJ denotes postnatal
T13209 385-389 NN denotes skin
T13210 390-394 VBD denotes were
T13211 401-404 IN denotes for
T13212 405-407 CD denotes 36
T13213 408-410 CD denotes 48
T13214 407-408 SYM denotes –
T13215 411-412 NN denotes h
T13216 413-418 RB denotes prior
T13217 419-421 IN denotes to
T13218 422-431 VBG denotes embedding
T13219 431-432 . denotes .
T13220 432-707 sentence denotes The Tbx15 probe was generated by RT–PCR using primers GGCGGCTAAAATGAGTGAAC and TGCCTGCTTTGGTGATGAT (corresponds to exons 1 and 2), and the En1 probe was generated by PCR from genomic DNA using primers ACGCACCAGGAAGCTAAAGA and AGCAACGAAAACGAAACTGG (located in the last exon).
T13221 433-436 DT denotes The
T13222 443-448 NN denotes probe
T13223 437-442 NN denotes Tbx15
T13224 453-462 VBN denotes generated
T13225 449-452 VBD denotes was
T13226 463-465 IN denotes by
T13227 466-468 NN denotes RT
T13228 469-472 NN denotes PCR
T13229 468-469 HYPH denotes –
T13230 473-478 VBG denotes using
T13231 479-486 NNS denotes primers
T13232 487-507 NN denotes GGCGGCTAAAATGAGTGAAC
T13233 508-511 CC denotes and
T13234 512-531 NN denotes TGCCTGCTTTGGTGATGAT
T13235 532-533 -LRB- denotes (
T13236 533-544 VBZ denotes corresponds
T13237 545-547 IN denotes to
T13238 548-553 NNS denotes exons
T13239 554-555 CD denotes 1
T13240 556-559 CC denotes and
T13241 560-561 CD denotes 2
T13242 561-562 -RRB- denotes )
T13243 562-564 , denotes ,
T13244 564-567 CC denotes and
T13245 568-571 DT denotes the
T13246 576-581 NN denotes probe
T13247 572-575 NN denotes En1
T13248 586-595 VBN denotes generated
T13249 582-585 VBD denotes was
T13250 596-598 IN denotes by
T13251 599-602 NN denotes PCR
T13252 603-607 IN denotes from
T13253 608-615 JJ denotes genomic
T13254 616-619 NN denotes DNA
T13255 620-625 VBG denotes using
T13256 626-633 NNS denotes primers
T13257 634-654 NN denotes ACGCACCAGGAAGCTAAAGA
T13258 655-658 CC denotes and
T13259 659-679 NN denotes AGCAACGAAAACGAAACTGG
T13260 680-681 -LRB- denotes (
T13261 681-688 VBN denotes located
T13262 689-691 IN denotes in
T13263 692-695 DT denotes the
T13264 701-705 NN denotes exon
T13265 696-700 JJ denotes last
T13266 705-706 -RRB- denotes )
T13267 706-707 . denotes .
T13268 707-768 sentence denotes The Agouti probe corresponds to the protein-coding sequence.
T13269 708-711 DT denotes The
T13270 719-724 NN denotes probe
T13271 712-718 NN denotes Agouti
T13272 725-736 VBZ denotes corresponds
T13273 737-739 IN denotes to
T13274 740-743 DT denotes the
T13275 759-767 NN denotes sequence
T13276 744-751 NN denotes protein
T13277 752-758 VBG denotes coding
T13278 751-752 HYPH denotes -
T13279 767-768 . denotes .
R9179 T13135 T13136 advmod In,situ
R9180 T13136 T13137 amod situ,hybridization
R9181 T13137 T13138 nsubjpass hybridization,carried
R9182 T13139 T13138 auxpass was,carried
R9183 T13140 T13138 prt out,carried
R9184 T13141 T13138 prep on,carried
R9185 T13142 T13143 nummod 12,μm
R9186 T13143 T13145 compound μm,sections
R9187 T13144 T13143 punct -,μm
R9188 T13145 T13141 pobj sections,on
R9189 T13146 T13145 compound paraffin,sections
R9190 T13147 T13138 advcl using,carried
R9191 T13148 T13149 npadvmod digoxigenin,labeled
R9192 T13149 T13151 amod labeled,probes
R9193 T13150 T13149 punct -,labeled
R9194 T13151 T13147 dobj probes,using
R9195 T13152 T13151 compound RNA,probes
R9196 T13153 T13154 punct (,Diagnostics
R9197 T13154 T13151 parataxis Diagnostics,probes
R9198 T13155 T13154 compound Roche,Diagnostics
R9199 T13156 T13154 punct ", ",Diagnostics
R9200 T13157 T13154 npadvmod Indianapolis,Diagnostics
R9201 T13158 T13154 punct ", ",Diagnostics
R9202 T13159 T13154 npadvmod Indiana,Diagnostics
R9203 T13160 T13154 punct ", ",Diagnostics
R9204 T13161 T13162 compound United,States
R9205 T13162 T13154 npadvmod States,Diagnostics
R9206 T13163 T13154 punct ),Diagnostics
R9207 T13164 T13147 prep according,using
R9208 T13165 T13164 prep to,according
R9209 T13166 T13167 amod standard,protocols
R9210 T13167 T13165 pobj protocols,to
R9211 T13168 T13169 punct (,Wilkinson
R9212 T13169 T13167 meta Wilkinson,protocols
R9213 T13170 T13169 cc and,Wilkinson
R9214 T13171 T13169 conj Nieto,Wilkinson
R9215 T13172 T13171 nummod 1993,Nieto
R9216 T13173 T13171 punct ),Nieto
R9217 T13174 T13138 punct .,carried
R9218 T13176 T13177 nsubjpass Embryos,obtained
R9219 T13178 T13176 cc and,Embryos
R9220 T13179 T13180 amod postnatal,samples
R9221 T13180 T13176 conj samples,Embryos
R9222 T13181 T13180 compound skin,samples
R9223 T13182 T13177 auxpass were,obtained
R9224 T13183 T13177 prep from,obtained
R9225 T13184 T13183 pobj intercrosses,from
R9226 T13185 T13184 prep of,intercrosses
R9227 T13186 T13187 nmod deH,mice
R9228 T13187 T13185 pobj mice,of
R9229 T13188 T13186 punct /,deH
R9230 T13189 T13186 punct +,deH
R9231 T13190 T13177 punct .,obtained
R9232 T13192 T13193 nsubjpass Embryos,fixed
R9233 T13193 T13198 ccomp fixed,fixed
R9234 T13194 T13192 npadvmod E13.5,Embryos
R9235 T13195 T13194 cc or,E13.5
R9236 T13196 T13194 conj younger,E13.5
R9237 T13197 T13193 auxpass were,fixed
R9238 T13199 T13193 prep for,fixed
R9239 T13200 T13201 nummod 24,h
R9240 T13201 T13199 pobj h,for
R9241 T13202 T13198 punct ;,fixed
R9242 T13203 T13198 nsubjpass those,fixed
R9243 T13204 T13203 amod older,those
R9244 T13205 T13204 prep than,older
R9245 T13206 T13205 pobj E13.5,than
R9246 T13207 T13203 cc and,those
R9247 T13208 T13209 amod postnatal,skin
R9248 T13209 T13203 conj skin,those
R9249 T13210 T13198 auxpass were,fixed
R9250 T13211 T13198 prep for,fixed
R9251 T13212 T13213 quantmod 36,48
R9252 T13213 T13215 nummod 48,h
R9253 T13214 T13213 punct –,48
R9254 T13215 T13211 pobj h,for
R9255 T13216 T13198 advmod prior,fixed
R9256 T13217 T13216 prep to,prior
R9257 T13218 T13217 pobj embedding,to
R9258 T13219 T13198 punct .,fixed
R9259 T13221 T13222 det The,probe
R9260 T13222 T13224 nsubjpass probe,generated
R9261 T13223 T13222 compound Tbx15,probe
R9262 T13225 T13224 auxpass was,generated
R9263 T13226 T13224 prep by,generated
R9264 T13227 T13228 compound RT,PCR
R9265 T13228 T13226 pobj PCR,by
R9266 T13229 T13228 punct –,PCR
R9267 T13230 T13224 advcl using,generated
R9268 T13231 T13232 compound primers,GGCGGCTAAAATGAGTGAAC
R9269 T13232 T13230 dobj GGCGGCTAAAATGAGTGAAC,using
R9270 T13233 T13232 cc and,GGCGGCTAAAATGAGTGAAC
R9271 T13234 T13232 conj TGCCTGCTTTGGTGATGAT,GGCGGCTAAAATGAGTGAAC
R9272 T13235 T13236 punct (,corresponds
R9273 T13236 T13230 parataxis corresponds,using
R9274 T13237 T13236 prep to,corresponds
R9275 T13238 T13237 pobj exons,to
R9276 T13239 T13238 nummod 1,exons
R9277 T13240 T13238 cc and,exons
R9278 T13241 T13238 conj 2,exons
R9279 T13242 T13236 punct ),corresponds
R9280 T13243 T13224 punct ", ",generated
R9281 T13244 T13224 cc and,generated
R9282 T13245 T13246 det the,probe
R9283 T13246 T13248 nsubjpass probe,generated
R9284 T13247 T13246 compound En1,probe
R9285 T13248 T13224 conj generated,generated
R9286 T13249 T13248 auxpass was,generated
R9287 T13250 T13248 prep by,generated
R9288 T13251 T13250 pobj PCR,by
R9289 T13252 T13248 prep from,generated
R9290 T13253 T13254 amod genomic,DNA
R9291 T13254 T13252 pobj DNA,from
R9292 T13255 T13248 advcl using,generated
R9293 T13256 T13257 compound primers,ACGCACCAGGAAGCTAAAGA
R9294 T13257 T13255 dobj ACGCACCAGGAAGCTAAAGA,using
R9295 T13258 T13257 cc and,ACGCACCAGGAAGCTAAAGA
R9296 T13259 T13257 conj AGCAACGAAAACGAAACTGG,ACGCACCAGGAAGCTAAAGA
R9297 T13260 T13261 punct (,located
R9298 T13261 T13255 parataxis located,using
R9299 T13262 T13261 prep in,located
R9300 T13263 T13264 det the,exon
R9301 T13264 T13262 pobj exon,in
R9302 T13265 T13264 amod last,exon
R9303 T13266 T13261 punct ),located
R9304 T13267 T13248 punct .,generated
R9305 T13269 T13270 det The,probe
R9306 T13270 T13272 nsubj probe,corresponds
R9307 T13271 T13270 compound Agouti,probe
R9308 T13273 T13272 prep to,corresponds
R9309 T13274 T13275 det the,sequence
R9310 T13275 T13273 pobj sequence,to
R9311 T13276 T13277 npadvmod protein,coding
R9312 T13277 T13275 amod coding,sequence
R9313 T13278 T13277 punct -,coding
R9314 T13279 T13272 punct .,corresponds

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13086 8-21 GO:0097617 denotes hybridization
T13087 71-82 CHEBI:42098 denotes digoxigenin
T13088 220-227 UBERON:0000922 denotes Embryos
T13089 236-241 GO:0007567 denotes natal
T13090 296-300 NCBITaxon:10088 denotes mice
T13091 302-309 UBERON:0000922 denotes Embryos
T13092 379-384 GO:0007567 denotes natal
T13093 437-442 PR:000016145 denotes Tbx15
T13094 479-486 SO:0000112 denotes primers
T13095 548-553 SO:0000147 denotes exons
T13096 572-575 PR:000007070 denotes En1
T13097 608-615 SO:0001026 denotes genomic
T13098 626-633 SO:0000112 denotes primers
T13099 701-705 SO:0000147 denotes exon
T13100 712-718 PR:000004372 denotes Agouti
T13101 744-758 SO:0000010 denotes protein-coding

2_test

Id Subject Object Predicate Lexical cue
14737183-8231863-84903085 213-217 8231863 denotes 1993
T86133 213-217 8231863 denotes 1993

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13103 8-21 GO:0097617 denotes hybridization
T13104 71-82 CHEBI:42098 denotes digoxigenin
T13105 83-90 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T13106 91-101 CHEBI_SO_EXT:riboprobe denotes RNA probes
T13107 220-227 UBERON:0000922 denotes Embryos
T13108 236-241 GO:0007567 denotes natal
T13109 242-246 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T13110 294-295 SO_EXT:normal_or_wild_type_or_present denotes +
T13111 296-300 NCBITaxon:10088 denotes mice
T13112 302-309 UBERON:0000922 denotes Embryos
T13113 379-384 GO:0007567 denotes natal
T13114 385-389 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T13115 437-442 PR_EXT:000016145 denotes Tbx15
T13116 443-448 CHEBI_SO_EXT:molecular_probe denotes probe
T13117 466-468 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T13118 479-486 SO_EXT:0000112 denotes primers
T13119 548-553 SO_EXT:0000147 denotes exons
T13120 572-575 PR_EXT:000007070 denotes En1
T13121 576-581 CHEBI_SO_EXT:molecular_probe denotes probe
T13122 608-619 SO_EXT:genomic_DNA denotes genomic DNA
T13123 616-619 CHEBI_SO_EXT:DNA denotes DNA
T13124 626-633 SO_EXT:0000112 denotes primers
T13125 701-705 SO_EXT:0000147 denotes exon
T13126 712-718 PR_EXT:000004372 denotes Agouti
T13127 719-724 CHEBI_SO_EXT:molecular_probe denotes probe
T13128 744-751 CHEBI_PR_EXT:protein denotes protein
T13129 744-758 SO:0000010 denotes protein-coding
T13130 752-767 SO_EXT:coding_sequence denotes coding sequence