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PMC:314463 / 60197-60440 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T12999 91-99 VBN denotes inserted
T13000 4-9 NN denotes brief
T13001 9-11 , denotes ,
T13002 11-13 DT denotes an
T13003 28-36 NN denotes cassette
T13004 14-18 NN denotes IRES
T13005 24-27 NN denotes neo
T13006 18-19 HYPH denotes -
T13007 19-23 NN denotes LacZ
T13008 23-24 HYPH denotes -
T13009 37-41 IN denotes with
T13010 42-43 CD denotes 5
T13011 61-65 NNS denotes arms
T13012 43-44 SYM denotes ′
T13013 45-48 CC denotes and
T13014 49-50 CD denotes 3
T13015 50-51 SYM denotes ′
T13016 52-60 NN denotes homology
T13017 66-68 IN denotes of
T13018 69-72 CD denotes 3.5
T13019 73-75 NN denotes kb
T13020 76-79 CC denotes and
T13021 80-83 CD denotes 1.8
T13022 84-86 NN denotes kb
T13023 87-90 VBD denotes was
T13024 100-104 IN denotes into
T13025 105-106 DT denotes a
T13026 120-124 NN denotes site
T13027 107-113 JJ denotes unique
T13028 114-119 NN denotes BamHI
T13029 125-129 WDT denotes that
T13030 130-134 VBZ denotes lies
T13031 135-138 CD denotes 479
T13032 139-150 NNS denotes nucleotides
T13033 151-161 RB denotes downstream
T13034 162-164 IN denotes of
T13035 165-168 DT denotes the
T13036 196-200 NN denotes site
T13037 169-184 JJ denotes transcriptional
T13038 185-195 NN denotes initiation
T13039 201-202 -LRB- denotes (
T13040 202-210 JJ denotes relative
T13041 211-213 IN denotes to
T13042 214-217 DT denotes the
T13043 223-231 NN denotes sequence
T13044 218-222 NN denotes mRNA
T13045 231-232 -RRB- denotes )
T13046 233-235 IN denotes in
T13047 236-240 NN denotes exon
T13048 241-242 CD denotes 3
T13049 242-243 . denotes .
T12997 0-243 sentence denotes In brief, an IRES-LacZ-neo cassette with 5′ and 3′ homology arms of 3.5 kb and 1.8 kb was inserted into a unique BamHI site that lies 479 nucleotides downstream of the transcriptional initiation site (relative to the mRNA sequence) in exon 3.
T12998 1-3 IN denotes In
R9103 T12998 T12999 prep In,inserted
R9104 T13000 T12998 pobj brief,In
R9105 T13001 T12999 punct ", ",inserted
R9106 T13002 T13003 det an,cassette
R9107 T13003 T12999 nsubjpass cassette,inserted
R9108 T13004 T13005 compound IRES,neo
R9109 T13005 T13003 compound neo,cassette
R9110 T13006 T13005 punct -,neo
R9111 T13007 T13005 compound LacZ,neo
R9112 T13008 T13005 punct -,neo
R9113 T13009 T13003 prep with,cassette
R9114 T13010 T13011 nummod 5,arms
R9115 T13011 T13009 pobj arms,with
R9116 T13012 T13010 punct ′,5
R9117 T13013 T13010 cc and,5
R9118 T13014 T13010 conj 3,5
R9119 T13015 T13014 punct ′,3
R9120 T13016 T13011 compound homology,arms
R9121 T13017 T13011 prep of,arms
R9122 T13018 T13019 nummod 3.5,kb
R9123 T13019 T13017 pobj kb,of
R9124 T13020 T13019 cc and,kb
R9125 T13021 T13022 nummod 1.8,kb
R9126 T13022 T13019 conj kb,kb
R9127 T13023 T12999 auxpass was,inserted
R9128 T13024 T12999 prep into,inserted
R9129 T13025 T13026 det a,site
R9130 T13026 T13024 pobj site,into
R9131 T13027 T13026 amod unique,site
R9132 T13028 T13026 compound BamHI,site
R9133 T13029 T13030 dep that,lies
R9134 T13030 T13026 relcl lies,site
R9135 T13031 T13032 nummod 479,nucleotides
R9136 T13032 T13033 npadvmod nucleotides,downstream
R9137 T13033 T13030 advmod downstream,lies
R9138 T13034 T13033 prep of,downstream
R9139 T13035 T13036 det the,site
R9140 T13036 T13034 pobj site,of
R9141 T13037 T13036 amod transcriptional,site
R9142 T13038 T13036 compound initiation,site
R9143 T13039 T13030 punct (,lies
R9144 T13040 T13030 advcl relative,lies
R9145 T13041 T13040 prep to,relative
R9146 T13042 T13043 det the,sequence
R9147 T13043 T13041 pobj sequence,to
R9148 T13044 T13043 compound mRNA,sequence
R9149 T13045 T13030 punct ),lies
R9150 T13046 T13030 prep in,lies
R9151 T13047 T13046 pobj exon,in
R9152 T13048 T13047 nummod 3,exon
R9153 T13049 T12999 punct .,inserted

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12940 14-18 SO:0000243 denotes IRES
T12941 19-23 PR:000033987 denotes LacZ
T12942 28-36 SO:0005853 denotes cassette
T12943 114-119 PR:P23940 denotes BamHI
T12944 169-200 SO:0000315 denotes transcriptional initiation site
T12945 236-240 SO:0000147 denotes exon

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12953 14-18 SO_EXT:0000243 denotes IRES
T12954 19-23 PR_EXT:000033987 denotes LacZ
T12955 24-27 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes neo
T12956 28-36 SO_EXT:0005853 denotes cassette
T12957 74-75 CHEBI_SO_EXT:base denotes b
T12958 85-86 CHEBI_SO_EXT:base denotes b
T12959 91-99 SO_EXT:sequence_insertion_process denotes inserted
T12960 114-119 PR_EXT:P23940 denotes BamHI
T12961 139-150 CHEBI_SO_EXT:nucleotide denotes nucleotides
T12962 151-161 SO_EXT:sequence_downstreamness denotes downstream
T12963 169-184 GO_EXT:transcription denotes transcriptional
T12964 169-200 SO_EXT:0000315 denotes transcriptional initiation site
T12965 218-222 CHEBI_SO_EXT:mRNA denotes mRNA
T12966 223-231 SO_EXT:biological_sequence denotes sequence
T12967 236-240 SO_EXT:0000147 denotes exon