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PMC:3062687 / 32510-32947 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22106 0-10 P08659 denotes Luciferase
T22107 32-42 P08659 denotes Luciferase
T22108 195-205 P08659 denotes luciferase
T22109 232-242 P08659 denotes luciferase
T22110 412-422 P08659 denotes Luciferase

2_test

Id Subject Object Predicate Lexical cue
21399639-18045535-74765189 102-103 18045535 denotes 6
21399639-18045535-74765189 102-103 18045535 denotes 6

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22041 0-10 NNP denotes Luciferase
T22042 11-19 NNP denotes Reporter
T22043 20-24 NNP denotes Gene
T22044 25-31 NN denotes Assays
T22045 32-42 NN denotes Luciferase
T22046 43-51 NN denotes reporter
T22047 52-56 NN denotes gene
T22048 57-63 NN denotes assays
T22049 64-68 VB denotes were
T22050 69-78 VB denotes performed
T22051 79-81 IN denotes as
T22052 82-92 RB denotes previously
T22053 93-103 NN denotes described6
T22054 105-112 RB denotes Briefly
T22055 112-113 -COMMA- denotes ,
T22056 114-119 NN denotes cells
T22057 120-124 VB denotes were
T22058 125-138 VB denotes cotransfected
T22059 139-141 IN denotes at
T22060 142-143 DT denotes a
T22061 144-149 NN denotes ratio
T22062 150-152 IN denotes of
T22063 153-155 CD denotes 10
T22064 155-156 -COLON- denotes :
T22065 156-157 CD denotes 1
T22066 158-162 IN denotes with
T22067 163-170 JJ denotes various
T22068 171-186 JJ denotes promoter-driven
T22069 187-194 NN denotes firefly
T22070 195-205 NN denotes luciferase
T22071 206-216 NN denotes constructs
T22072 217-219 TO denotes to
T22073 220-223 DT denotes the
T22074 224-231 NNP denotes Renilla
T22075 232-242 NN denotes luciferase
T22076 243-248 NN denotes pTKRL
T22077 249-256 NN denotes plasmid
T22078 256-257 -COMMA- denotes ,
T22079 258-266 RB denotes together
T22080 267-271 IN denotes with
T22081 272-281 VB denotes indicated
T22082 282-290 NN denotes plasmids
T22083 292-297 NN denotes Cells
T22084 298-302 VB denotes were
T22085 303-311 VB denotes cultured
T22086 312-315 IN denotes for
T22087 316-319 CD denotes 1–2
T22088 320-324 NN denotes days
T22089 325-328 CC denotes and
T22090 329-333 RB denotes then
T22091 334-344 VB denotes stimulated
T22092 345-347 IN denotes in
T22093 348-358 NN denotes triplicate
T22094 359-365 IN denotes before
T22095 366-373 NN denotes harvest
T22096 375-382 NN denotes Lysates
T22097 383-387 VB denotes were
T22098 388-396 VB denotes analyzed
T22099 397-402 VB denotes using
T22100 403-406 DT denotes the
T22101 407-422 NN denotes Dual-Luciferase
T22102 423-426 NN denotes Kit
T22103 427-428 -LRB- denotes (
T22104 428-435 NN denotes Promega
T22105 435-436 -RRB- denotes )
R17564 T22043 T22041 arg1Of Gene,Luciferase
R17565 T22043 T22042 arg1Of Gene,Reporter
R17566 T22044 T22043 arg1Of Assays,Gene
R17567 T22048 T22045 arg1Of assays,Luciferase
R17568 T22048 T22046 arg1Of assays,reporter
R17569 T22048 T22047 arg1Of assays,gene
R17570 T22048 T22049 arg1Of assays,were
R17571 T22048 T22050 arg2Of assays,performed
R17572 T22050 T22049 arg2Of performed,were
R17573 T22050 T22051 arg1Of performed,as
R17574 T22053 T22051 arg2Of described6,as
R17575 T22053 T22052 arg1Of described6,previously
R17576 T22056 T22057 arg1Of cells,were
R17577 T22056 T22058 arg2Of cells,cotransfected
R17578 T22058 T22054 arg1Of cotransfected,Briefly
R17579 T22058 T22055 arg1Of cotransfected,","
R17580 T22058 T22057 arg2Of cotransfected,were
R17581 T22058 T22059 arg1Of cotransfected,at
R17582 T22061 T22059 arg2Of ratio,at
R17583 T22061 T22060 arg1Of ratio,a
R17584 T22061 T22062 arg1Of ratio,of
R17585 T22061 T22064 arg1Of ratio,:
R17586 T22063 T22062 arg2Of 10,of
R17587 T22065 T22064 arg2Of 1,:
R17588 T22065 T22066 arg1Of 1,with
R17589 T22071 T22066 arg2Of constructs,with
R17590 T22071 T22067 arg1Of constructs,various
R17591 T22071 T22068 arg1Of constructs,promoter-driven
R17592 T22071 T22069 arg1Of constructs,firefly
R17593 T22071 T22070 arg1Of constructs,luciferase
R17594 T22071 T22072 arg1Of constructs,to
R17595 T22077 T22072 arg2Of plasmid,to
R17596 T22077 T22073 arg1Of plasmid,the
R17597 T22077 T22074 arg1Of plasmid,Renilla
R17598 T22077 T22075 arg1Of plasmid,luciferase
R17599 T22077 T22076 arg1Of plasmid,pTKRL
R17600 T22077 T22078 arg1Of plasmid,","
R17601 T22077 T22080 arg1Of plasmid,with
R17602 T22080 T22079 arg1Of with,together
R17603 T22082 T22080 arg2Of plasmids,with
R17604 T22082 T22081 arg2Of plasmids,indicated
R17605 T22083 T22084 arg1Of Cells,were
R17606 T22083 T22085 arg2Of Cells,cultured
R17607 T22083 T22091 arg2Of Cells,stimulated
R17608 T22085 T22086 arg1Of cultured,for
R17609 T22085 T22089 arg1Of cultured,and
R17610 T22088 T22086 arg2Of days,for
R17611 T22088 T22087 arg1Of days,1–2
R17612 T22089 T22084 arg2Of and,were
R17613 T22091 T22089 arg2Of stimulated,and
R17614 T22091 T22090 arg1Of stimulated,then
R17615 T22091 T22092 arg1Of stimulated,in
R17616 T22093 T22092 arg2Of triplicate,in
R17617 T22093 T22094 arg1Of triplicate,before
R17618 T22095 T22094 arg2Of harvest,before
R17619 T22096 T22097 arg1Of Lysates,were
R17620 T22096 T22098 arg2Of Lysates,analyzed
R17621 T22098 T22097 arg2Of analyzed,were
R17622 T22099 T22098 arg3Of using,analyzed
R17623 T22102 T22099 arg2Of Kit,using
R17624 T22102 T22100 arg1Of Kit,the
R17625 T22102 T22101 arg1Of Kit,Dual-Luciferase
R17626 T22102 T22103 arg1Of Kit,(
R17627 T22104 T22103 arg2Of Promega,(
R17628 T22105 T22103 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22111 0-10 NNP denotes Luciferase
T22112 11-19 NNP denotes Reporter
T22113 20-24 NNP denotes Gene
T22114 25-31 NNP denotes Assays
T22115 32-42 NNP denotes Luciferase
T22116 43-51 NN denotes reporter
T22117 52-56 NN denotes gene
T22118 57-63 NNS denotes assays
T22119 64-68 VBD denotes were
T22120 69-78 VBN denotes performed
T22121 79-81 IN denotes as
T22122 82-92 RB denotes previously
T22123 93-103 CD denotes described6
T22124 103-104 . denotes .
T22125 105-112 RB denotes Briefly
T22126 112-113 , denotes ,
T22127 114-119 NNS denotes cells
T22128 120-124 VBD denotes were
T22129 125-138 VBN denotes cotransfected
T22130 139-141 IN denotes at
T22131 142-143 DT denotes a
T22132 144-149 NN denotes ratio
T22133 150-152 IN denotes of
T22134 153-157 CD denotes 10:1
T22135 158-162 IN denotes with
T22136 163-170 JJ denotes various
T22137 171-186 JJ denotes promoter-driven
T22138 187-194 RB denotes firefly
T22139 195-205 JJ denotes luciferase
T22140 206-216 NNS denotes constructs
T22141 217-219 TO denotes to
T22142 220-223 DT denotes the
T22143 224-231 NNP denotes Renilla
T22144 232-242 NN denotes luciferase
T22145 243-248 NNP denotes pTKRL
T22146 249-256 NN denotes plasmid
T22147 256-257 , denotes ,
T22148 258-266 RB denotes together
T22149 267-271 IN denotes with
T22150 272-281 JJ denotes indicated
T22151 282-290 NNS denotes plasmids
T22152 290-291 . denotes .
T22153 292-297 NNS denotes Cells
T22154 298-302 VBD denotes were
T22155 303-311 VBN denotes cultured
T22156 312-315 IN denotes for
T22157 316-317 CD denotes 1
T22158 318-319 CD denotes 2
T22159 320-324 NNS denotes days
T22160 325-328 CC denotes and
T22161 329-333 RB denotes then
T22162 334-344 VBD denotes stimulated
T22163 345-347 IN denotes in
T22164 348-358 NN denotes triplicate
T22165 359-365 IN denotes before
T22166 366-373 NN denotes harvest
T22167 373-374 . denotes .
T22168 375-382 NNS denotes Lysates
T22169 383-387 VBD denotes were
T22170 388-396 VBN denotes analyzed
T22171 397-402 VBG denotes using
T22172 403-406 DT denotes the
T22173 407-422 NNP denotes Dual-Luciferase
T22174 423-426 NNP denotes Kit
T22175 427-428 -LRB- denotes (
T22176 428-435 NNP denotes Promega
T22177 435-436 -RRB- denotes )
T22178 436-437 . denotes .
R17629 T22111 T22112 compound Luciferase,Reporter
R17630 T22112 T22118 compound Reporter,assays
R17631 T22113 T22118 compound Gene,assays
R17632 T22114 T22118 compound Assays,assays
R17633 T22115 T22118 compound Luciferase,assays
R17634 T22116 T22117 compound reporter,gene
R17635 T22117 T22118 compound gene,assays
R17636 T22118 T22120 nsubjpass assays,performed
R17637 T22119 T22120 auxpass were,performed
R17638 T22120 T22120 ROOT performed,performed
R17639 T22121 T22120 prep as,performed
R17640 T22122 T22123 advmod previously,described6
R17641 T22123 T22121 pobj described6,as
R17642 T22124 T22120 punct .,performed
R17643 T22125 T22129 advmod Briefly,cotransfected
R17644 T22126 T22129 punct ",",cotransfected
R17645 T22127 T22129 nsubjpass cells,cotransfected
R17646 T22128 T22129 auxpass were,cotransfected
R17647 T22129 T22129 ROOT cotransfected,cotransfected
R17648 T22130 T22129 prep at,cotransfected
R17649 T22131 T22132 det a,ratio
R17650 T22132 T22130 pobj ratio,at
R17651 T22133 T22132 prep of,ratio
R17652 T22134 T22133 pobj 10:1,of
R17653 T22135 T22134 prep with,10:1
R17654 T22136 T22140 amod various,constructs
R17655 T22137 T22140 amod promoter-driven,constructs
R17656 T22138 T22139 advmod firefly,luciferase
R17657 T22139 T22140 amod luciferase,constructs
R17658 T22140 T22135 pobj constructs,with
R17659 T22141 T22140 prep to,constructs
R17660 T22142 T22146 det the,plasmid
R17661 T22143 T22146 compound Renilla,plasmid
R17662 T22144 T22145 compound luciferase,pTKRL
R17663 T22145 T22146 compound pTKRL,plasmid
R17664 T22146 T22141 pobj plasmid,to
R17665 T22147 T22129 punct ",",cotransfected
R17666 T22148 T22149 advmod together,with
R17667 T22149 T22129 prep with,cotransfected
R17668 T22150 T22151 amod indicated,plasmids
R17669 T22151 T22149 pobj plasmids,with
R17670 T22152 T22129 punct .,cotransfected
R17671 T22153 T22154 nsubj Cells,were
R17672 T22154 T22154 ROOT were,were
R17673 T22155 T22154 acomp cultured,were
R17674 T22156 T22155 prep for,cultured
R17675 T22157 T22158 quantmod 1,2
R17676 T22158 T22159 nummod 2,days
R17677 T22159 T22156 pobj days,for
R17678 T22160 T22155 cc and,cultured
R17679 T22161 T22162 advmod then,stimulated
R17680 T22162 T22155 conj stimulated,cultured
R17681 T22163 T22162 prep in,stimulated
R17682 T22164 T22163 pobj triplicate,in
R17683 T22165 T22162 prep before,stimulated
R17684 T22166 T22165 pobj harvest,before
R17685 T22167 T22154 punct .,were
R17686 T22168 T22170 nsubjpass Lysates,analyzed
R17687 T22169 T22170 auxpass were,analyzed
R17688 T22170 T22170 ROOT analyzed,analyzed
R17689 T22171 T22170 advcl using,analyzed
R17690 T22172 T22174 det the,Kit
R17691 T22173 T22174 compound Dual-Luciferase,Kit
R17692 T22174 T22171 dobj Kit,using
R17693 T22175 T22174 punct (,Kit
R17694 T22176 T22174 appos Promega,Kit
R17695 T22177 T22174 punct ),Kit
R17696 T22178 T22170 punct .,analyzed

GO-CC

Id Subject Object Predicate Lexical cue
T22186 114-119 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T22039 292-374 Sentence denotes Cells were cultured for 1–2 days and then stimulated in triplicate before harvest.
T22040 375-437 Sentence denotes Lysates were analyzed using the Dual-Luciferase Kit (Promega).
T22036 0-31 Sentence denotes Luciferase Reporter Gene Assays
T22037 32-104 Sentence denotes Luciferase reporter gene assays were performed as previously described6.
T22038 105-291 Sentence denotes Briefly, cells were cotransfected at a ratio of 10:1 with various promoter-driven firefly luciferase constructs to the Renilla luciferase pTKRL plasmid, together with indicated plasmids.
T226 0-31 Sentence denotes Luciferase Reporter Gene Assays
T227 32-104 Sentence denotes Luciferase reporter gene assays were performed as previously described6.
T228 105-291 Sentence denotes Briefly, cells were cotransfected at a ratio of 10:1 with various promoter-driven firefly luciferase constructs to the Renilla luciferase pTKRL plasmid, together with indicated plasmids.
T229 292-374 Sentence denotes Cells were cultured for 1–2 days and then stimulated in triplicate before harvest.
T230 375-437 Sentence denotes Lysates were analyzed using the Dual-Luciferase Kit (Promega).

events-check-again

Id Subject Object Predicate Lexical cue
T22201 195-205 Protein denotes luciferase
T22202 232-242 Protein denotes luciferase

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T22187 0-10 Protein denotes Luciferase
T22188 32-42 Protein denotes Luciferase
T22189 187-216 Protein denotes firefly luciferase constructs
T22190 224-248 Protein denotes Renilla luciferase pTKRL
T22191 407-426 Protein denotes Dual-Luciferase Kit
T22192 428-435 Protein denotes Promega
T22193 397-402 Gene_expression denotes using
T22194 397-402 Gene_expression denotes using
R17697 T22191 T22193 themeOf Dual-Luciferase Kit,using
R17698 T22192 T22194 themeOf Promega,using

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T22035 232-242 Protein denotes luciferase
T22034 195-205 Protein denotes luciferase

test2

Id Subject Object Predicate Lexical cue
T22032 195-205 Protein denotes luciferase
T22033 232-242 Protein denotes luciferase