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PMC:3062687 / 1793-2063 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1146 115-120 P23396 denotes NleH1
T1147 187-191 P23396 denotes RPS3
T1148 233-236 P21579 denotes p65
T1149 233-236 Q04206 denotes p65

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T934 16-20 FW denotes coli
T935 21-22 -LRB- denotes (
T936 22-26 NN denotes EHEC
T937 26-27 -RRB- denotes )
T938 27-28 CD denotes 9
T939 30-32 IN denotes In
T940 33-43 JJ denotes particular
T941 43-44 -COMMA- denotes ,
T942 45-51 NNP denotes the E.
T943 52-61 NN denotes coli O157
T944 61-62 -COLON- denotes :
T945 62-64 NN denotes H7
T946 65-69 NN denotes type
T947 70-73 CD denotes III
T948 74-83 NN denotes secretion
T949 84-90 NN denotes system
T950 91-92 -LRB- denotes (
T951 92-96 NN denotes T3SS
T952 96-97 -RRB- denotes )
T953 98-106 NN denotes effector
T954 107-114 NN denotes protein
T955 115-120 NN denotes NleH1
T956 121-132 RB denotes selectively
T957 133-139 VB denotes blocks
T958 140-145 NN denotes NF-κB
T959 146-152 NN denotes target
T960 153-157 NN denotes gene
T961 158-171 NN denotes transcription
T962 172-174 IN denotes by
T963 175-186 VB denotes attenuating
T964 187-191 NN denotes RPS3
T965 192-199 JJ denotes nuclear
T966 200-213 NN denotes translocation
T967 213-214 -COMMA- denotes ,
T968 215-222 IN denotes without
T969 223-232 VB denotes affecting
T970 233-236 NN denotes p65
T971 237-250 NN denotes localization9
T972 252-263 RB denotes Nonetheless
T973 263-264 -COMMA- denotes ,
T974 265-268 WRB denotes how
R765 T934 T935 arg1Of coli,(
R766 T936 T935 arg2Of EHEC,(
R767 T937 T935 arg3Of ),(
R768 T940 T939 arg2Of particular,In
R769 T943 T942 arg1Of coli O157,the E.
R770 T943 T944 arg1Of coli O157,:
R771 T949 T944 arg2Of system,:
R772 T949 T945 arg1Of system,H7
R773 T949 T946 arg1Of system,type
R774 T949 T947 arg1Of system,III
R775 T949 T948 arg1Of system,secretion
R776 T949 T950 arg1Of system,(
R777 T951 T950 arg2Of T3SS,(
R778 T952 T950 arg3Of ),(
R779 T955 T953 arg1Of NleH1,effector
R780 T955 T954 arg1Of NleH1,protein
R781 T955 T957 arg1Of NleH1,blocks
R782 T955 T963 arg1Of NleH1,attenuating
R783 T957 T939 arg1Of blocks,In
R784 T957 T941 arg1Of blocks,","
R785 T957 T943 arg1Of blocks,coli O157
R786 T957 T956 arg1Of blocks,selectively
R787 T957 T962 arg1Of blocks,by
R788 T960 T958 arg1Of gene,NF-κB
R789 T960 T959 arg1Of gene,target
R790 T961 T957 arg2Of transcription,blocks
R791 T961 T960 arg1Of transcription,gene
R792 T963 T962 arg2Of attenuating,by
R793 T963 T967 arg1Of attenuating,","
R794 T963 T968 arg1Of attenuating,without
R795 T966 T963 arg2Of translocation,attenuating
R796 T966 T964 arg1Of translocation,RPS3
R797 T966 T965 arg1Of translocation,nuclear
R798 T969 T968 arg2Of affecting,without
R799 T971 T969 arg2Of localization9,affecting
R800 T971 T970 arg1Of localization9,p65

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1308 16-20 NNS denotes coli
T1309 21-22 -LRB- denotes (
T1310 22-26 NNP denotes EHEC
T1311 26-27 -RRB- denotes )
T1312 27-28 CD denotes 9
T1313 28-29 . denotes .
T1314 30-32 IN denotes In
T1315 33-43 JJ denotes particular
T1316 43-44 , denotes ,
T1317 45-50 NNP denotes the E
T1318 50-51 . denotes .
T1319 52-61 NNP denotes coli O157
T1320 61-62 : denotes :
T1321 62-64 NNP denotes H7
T1322 65-69 NN denotes type
T1323 70-73 NNP denotes III
T1324 74-83 NN denotes secretion
T1325 84-90 NN denotes system
T1326 91-92 -LRB- denotes (
T1327 92-96 CD denotes T3SS
T1328 96-97 -RRB- denotes )
T1329 98-106 NN denotes effector
T1330 107-114 NN denotes protein
T1331 115-120 NNP denotes NleH1
T1332 121-132 RB denotes selectively
T1333 133-139 NNS denotes blocks
T1334 140-145 JJ denotes NF-κB
T1335 146-152 NN denotes target
T1336 153-157 NN denotes gene
T1337 158-171 NN denotes transcription
T1338 172-174 IN denotes by
T1339 175-186 VBG denotes attenuating
T1340 187-191 JJ denotes RPS3
T1341 192-199 JJ denotes nuclear
T1342 200-213 NN denotes translocation
T1343 213-214 , denotes ,
T1344 215-222 IN denotes without
T1345 223-232 VBG denotes affecting
T1346 233-236 CD denotes p65
T1347 237-250 CD denotes localization9
T1348 250-251 . denotes .
T1349 252-263 RB denotes Nonetheless
T1350 263-264 , denotes ,
T1351 265-268 WRB denotes how
R1111 T1309 T1310 punct (,EHEC
R1112 T1310 T1308 appos EHEC,coli
R1113 T1311 T1312 punct ),9
R1114 T1312 T1312 ROOT 9,9
R1115 T1313 T1312 punct .,9
R1116 T1314 T1317 prep In,the E
R1117 T1315 T1314 amod particular,In
R1118 T1316 T1317 punct ",",the E
R1119 T1317 T1317 ROOT the E,the E
R1120 T1318 T1317 punct .,the E
R1121 T1319 T1319 ROOT coli O157,coli O157
R1122 T1320 T1319 punct :,coli O157
R1123 T1321 T1325 compound H7,system
R1124 T1322 T1325 compound type,system
R1125 T1323 T1325 compound III,system
R1126 T1324 T1325 compound secretion,system
R1127 T1325 T1325 ROOT system,system
R1128 T1326 T1325 punct (,system
R1129 T1327 T1325 appos T3SS,system
R1130 T1328 T1325 punct ),system
R1131 T1329 T1330 compound effector,protein
R1132 T1330 T1333 compound protein,blocks
R1133 T1331 T1333 nsubj NleH1,blocks
R1134 T1332 T1333 advmod selectively,blocks
R1135 T1333 T1333 ROOT blocks,blocks
R1136 T1334 T1337 compound NF-κB,transcription
R1137 T1335 T1336 compound target,gene
R1138 T1336 T1337 compound gene,transcription
R1139 T1337 T1333 dobj transcription,blocks
R1140 T1338 T1333 prep by,blocks
R1141 T1339 T1338 pcomp attenuating,by
R1142 T1340 T1342 amod RPS3,translocation
R1143 T1341 T1342 amod nuclear,translocation
R1144 T1342 T1339 dobj translocation,attenuating
R1145 T1343 T1333 punct ",",blocks
R1146 T1344 T1333 prep without,blocks
R1147 T1345 T1344 pcomp affecting,without
R1148 T1346 T1347 nummod p65,localization9
R1149 T1347 T1345 dobj localization9,affecting
R1150 T1348 T1333 punct .,blocks

GO-BP

Id Subject Object Predicate Lexical cue
T1585 158-171 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1590 74-83 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T1591 158-186 http://purl.obolibrary.org/obo/GO_0031555 denotes transcription by attenuating

sentences

Id Subject Object Predicate Lexical cue
T785 30-251 Sentence denotes In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9.
T14 30-251 Sentence denotes In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T1847 115-120 Protein denotes NleH1
T1848 175-186 Negative_regulation denotes attenuating
T1849 187-191 Protein denotes RPS3
T1850 192-199 Entity denotes nuclear
T1851 200-213 Localization denotes translocation
T1852 223-232 Regulation denotes affecting true
T1853 233-236 Protein denotes p65
T1854 237-249 Localization denotes localization
R1475 T1847 T1852 causeOf NleH1,affecting
R1476 T1847 T1848 causeOf NleH1,attenuating
R1478 T1849 T1851 themeOf RPS3,translocation
R1480 T1850 T1851 locationOf nuclear,translocation
R1481 T1851 T1848 themeOf translocation,attenuating
R1482 T1853 T1854 themeOf p65,localization
R1483 T1854 T1852 themeOf localization,affecting

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T1635 115-120 Protein denotes NleH1
T1636 140-145 Protein denotes NF-κB
T1637 187-191 Protein denotes RPS3
T1638 233-236 Protein denotes p65
T1639 237-250 Protein denotes localization9
T1640 74-83 Localization denotes secretion
T1641 158-171 Transcription denotes transcription
T1642 192-199 Entity denotes nuclear
T1643 200-213 Localization denotes translocation
T1644 175-186 Negative_regulation denotes attenuating
R1377 T1635 T1640 themeOf NleH1,secretion
R1378 T1636 T1641 themeOf NF-κB,transcription
R1379 T1637 T1643 themeOf RPS3,translocation
R1382 T1642 T1643 locationOf nuclear,translocation
R1383 T1643 T1644 themeOf translocation,attenuating

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T742 115-120 Protein denotes NleH1
T743 175-186 Negative_regulation denotes attenuating
T744 187-191 Protein denotes RPS3
T745 192-199 Entity denotes nuclear
T746 200-213 Localization denotes translocation
T747 223-232 Regulation denotes affecting true
T748 233-236 Protein denotes p65
T749 237-249 Localization denotes localization
R597 T742 T747 causeOf NleH1,affecting
R598 T742 T743 causeOf NleH1,attenuating
R599 T744 T746 themeOf RPS3,translocation
R600 T745 T746 locationOf nuclear,translocation
R601 T746 T743 themeOf translocation,attenuating
R602 T748 T749 themeOf p65,localization
R603 T749 T747 themeOf localization,affecting

test2

Id Subject Object Predicate Lexical cue
T689 115-120 Protein denotes NleH1
T690 175-186 Negative_regulation denotes attenuating
T691 187-191 Protein denotes RPS3
T692 192-199 Entity denotes nuclear
T693 200-213 Localization denotes translocation
T694 223-232 Regulation denotes affecting
T695 233-236 Protein denotes p65
T696 237-250 Localization denotes localization9
R564 T689 T690 causeOf NleH1,attenuating
R565 T689 T694 causeOf NleH1,affecting
R566 T691 T693 themeOf RPS3,translocation
R567 T692 T693 locationOf nuclear,translocation
R568 T693 T690 themeOf translocation,attenuating
R569 T695 T696 themeOf p65,localization9
R570 T696 T694 themeOf localization9,affecting