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PMC:2889865 / 31744-32647 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14699 0-7 JJ denotes Reverse
T14700 8-21 NN denotes transcription
T14701 22-34 JJ denotes quantitative
T14702 35-38 NN denotes PCR
T14703 39-40 -LRB- denotes (
T14704 40-47 NN denotes RT-qPCR
T14705 47-48 -RRB- denotes )
T14706 49-56 NN denotes RT-qPCR
T14707 57-60 VB denotes was
T14708 61-65 VB denotes used
T14709 66-68 TO denotes to
T14710 69-78 VB denotes determine
T14711 79-83 NN denotes gene
T14712 84-94 NN denotes expression
T14713 95-101 NN denotes levels
T14714 102-104 IN denotes of
T14715 105-109 NN denotes il-6
T14716 110-113 CC denotes and
T14717 114-119 NN denotes cxcl8
T14718 120-122 IN denotes in
T14719 123-131 NN denotes response
T14720 132-134 TO denotes to
T14721 135-138 NN denotes PMA
T14722 139-148 VB denotes following
T14723 149-159 NN denotes inhibition
T14724 160-162 IN denotes of
T14725 163-168 NN denotes NF-κB
T14726 168-169 -COMMA- denotes ,
T14727 170-173 NN denotes JNK
T14728 174-177 CC denotes and
T14729 178-181 NN denotes PKC
T14730 183-186 DT denotes The
T14731 187-196 VB denotes following
T14732 197-203 NN denotes primer
T14733 204-213 NN denotes sequences
T14734 214-218 VB denotes were
T14735 219-223 VB denotes used
T14736 223-224 -COMMA- denotes ,
T14737 225-229 NN denotes il-6
T14738 229-230 -COLON- denotes :
T14739 231-239 JJ denotes forward-
T14740 240-264 NN denotes TGTGAAAGCAGCAAAGAGGCACTG
T14741 264-265 -COMMA- denotes ,
T14742 266-274 NN denotes reverse-
T14743 275-299 NN denotes ACAGCTCTGGCTTGTTCCTCACTA
T14744 299-300 -COLON- denotes ;
T14745 301-306 NN denotes cxcl8
T14746 306-307 -COLON- denotes :
T14747 308-316 JJ denotes forward-
T14748 317-341 NN denotes ACCACACTGCGCCAACACAGAAAT
T14749 341-342 -COMMA- denotes ,
T14750 343-351 NN denotes reverse-
T14751 352-376 NN denotes AAACTTCTCCACAACCCTCTGCAC
T14752 378-391 VB denotes Thermocycling
T14753 392-402 NN denotes conditions
T14754 403-406 IN denotes for
T14755 407-411 NN denotes CYBR
T14756 412-417 NNP denotes Green
T14757 418-419 -LRB- denotes (
T14758 419-425 NNP denotes Quanta
T14759 425-426 -COMMA- denotes ,
T14760 427-430 NNP denotes USA
T14761 430-431 -RRB- denotes )
T14762 432-441 VB denotes consisted
T14763 442-444 IN denotes of
T14764 445-446 DT denotes a
T14765 447-459 NN denotes denaturation
T14766 460-464 NN denotes step
T14767 465-468 IN denotes for
T14768 469-471 CD denotes 10
T14769 472-475 NN denotes min
T14770 476-478 IN denotes at
T14771 479-481 CD denotes 95
T14772 482-484 NN denotes °C
T14773 485-493 VB denotes followed
T14774 494-496 IN denotes by
T14775 497-499 CD denotes 60
T14776 500-506 NN denotes cycles
T14777 507-509 IN denotes of
T14778 510-514 NN denotes 95°C
T14779 515-518 IN denotes for
T14780 519-521 NN denotes 1s
T14781 522-525 CC denotes and
T14782 526-530 NN denotes 60°C
T14783 531-534 IN denotes for
T14784 535-538 CD denotes 30s
T14785 540-544 NN denotes Gene
T14786 545-555 NN denotes expression
T14787 556-559 VB denotes was
T14788 560-568 VB denotes analysed
T14789 569-574 VB denotes using
T14790 575-585 NN denotes Stratagene
T14791 586-587 -LRB- denotes (
T14792 587-595 NN denotes Mx3000p™
T14793 595-596 -RRB- denotes )
T14794 597-598 -LRB- denotes (
T14795 598-600 NN denotes AH
T14796 601-612 NN denotes diagnostics
T14797 612-613 -RRB- denotes )
T14798 615-618 DT denotes The
T14799 619-627 VB denotes obtained
T14800 628-630 NN denotes Ct
T14801 631-637 NN denotes values
T14802 638-642 VB denotes were
T14803 643-653 VB denotes normalized
T14804 654-661 IN denotes against
T14805 662-665 NN denotes 18S
T14806 667-676 RB denotes Initially
T14807 676-677 -COMMA- denotes ,
T14808 678-681 DT denotes all
T14809 682-690 VB denotes measured
T14810 691-694 NN denotes 18S
T14811 695-697 NN denotes Ct
T14812 698-704 NN denotes values
T14813 705-709 VB denotes were
T14814 710-714 VB denotes used
T14815 715-717 TO denotes to
T14816 718-727 VB denotes calculate
T14817 728-729 DT denotes a
T14818 730-734 JJ denotes mean
T14819 735-737 NN denotes Ct
T14820 738-743 NN denotes value
T14821 744-748 WDT denotes that
T14822 749-752 VB denotes was
T14823 753-757 VB denotes used
T14824 758-760 TO denotes to
T14825 761-770 VB denotes determine
T14826 771-774 DT denotes the
T14827 775-778 NN denotes ΔCt
T14828 779-785 NN denotes values
T14829 786-789 IN denotes for
T14830 790-794 DT denotes each
T14831 795-801 NN denotes sample
T14832 803-807 NN denotes Gene
T14833 808-818 NN denotes expression
T14834 819-827 NN denotes patterns
T14835 828-831 IN denotes for
T14836 832-836 NN denotes il-6
T14837 837-840 CC denotes and
T14838 841-846 NN denotes cxcl8
T14839 847-851 VB denotes were
T14840 852-856 RB denotes then
T14841 857-867 VB denotes normalized
T14842 868-872 IN denotes with
T14843 873-879 NN denotes regard
T14844 880-882 TO denotes to
T14845 883-886 DT denotes the
T14846 887-894 NN denotes samples
T14847 895-898 NN denotes 18S
T14848 899-902 NNP denotes ΔCt
R11930 T14702 T14699 arg1Of PCR,Reverse
R11931 T14702 T14700 arg1Of PCR,transcription
R11932 T14702 T14701 arg1Of PCR,quantitative
R11933 T14702 T14703 arg1Of PCR,(
R11934 T14704 T14703 arg2Of RT-qPCR,(
R11935 T14705 T14703 arg3Of ),(
R11936 T14706 T14707 arg1Of RT-qPCR,was
R11937 T14706 T14708 arg2Of RT-qPCR,used
R11938 T14708 T14707 arg2Of used,was
R11939 T14708 T14718 arg1Of used,in
R11940 T14708 T14722 arg1Of used,following
R11941 T14710 T14708 arg3Of determine,used
R11942 T14710 T14709 arg1Of determine,to
R11943 T14713 T14710 arg2Of levels,determine
R11944 T14713 T14711 arg1Of levels,gene
R11945 T14713 T14712 arg1Of levels,expression
R11946 T14713 T14714 arg1Of levels,of
R11947 T14715 T14716 arg1Of il-6,and
R11948 T14716 T14714 arg2Of and,of
R11949 T14717 T14716 arg2Of cxcl8,and
R11950 T14718 T14720 arg1Of in,to
R11951 T14719 T14718 arg2Of response,in
R11952 T14721 T14718 arg3Of PMA,in
R11953 T14723 T14722 arg2Of inhibition,following
R11954 T14723 T14724 arg1Of inhibition,of
R11955 T14725 T14726 arg1Of NF-κB,","
R11956 T14726 T14728 arg1Of ",",and
R11957 T14727 T14726 arg2Of JNK,","
R11958 T14728 T14724 arg2Of and,of
R11959 T14729 T14728 arg2Of PKC,and
R11960 T14733 T14730 arg1Of sequences,The
R11961 T14733 T14731 arg1Of sequences,following
R11962 T14733 T14732 arg1Of sequences,primer
R11963 T14733 T14734 arg1Of sequences,were
R11964 T14733 T14735 arg2Of sequences,used
R11965 T14735 T14734 arg2Of used,were
R11966 T14735 T14736 arg1Of used,","
R11967 T14737 T14735 arg3Of il-6,used
R11968 T14737 T14738 arg1Of il-6,:
R11969 T14740 T14738 arg2Of TGTGAAAGCAGCAAAGAGGCACTG,:
R11970 T14740 T14739 arg1Of TGTGAAAGCAGCAAAGAGGCACTG,forward-
R11971 T14740 T14741 arg1Of TGTGAAAGCAGCAAAGAGGCACTG,","
R11972 T14740 T14744 arg1Of TGTGAAAGCAGCAAAGAGGCACTG,;
R11973 T14743 T14741 arg2Of ACAGCTCTGGCTTGTTCCTCACTA,","
R11974 T14743 T14742 arg1Of ACAGCTCTGGCTTGTTCCTCACTA,reverse-
R11975 T14745 T14744 arg2Of cxcl8,;
R11976 T14745 T14746 arg1Of cxcl8,:
R11977 T14748 T14746 arg2Of ACCACACTGCGCCAACACAGAAAT,:
R11978 T14748 T14747 arg1Of ACCACACTGCGCCAACACAGAAAT,forward-
R11979 T14748 T14749 arg1Of ACCACACTGCGCCAACACAGAAAT,","
R11980 T14751 T14749 arg2Of AAACTTCTCCACAACCCTCTGCAC,","
R11981 T14751 T14750 arg1Of AAACTTCTCCACAACCCTCTGCAC,reverse-
R11982 T14753 T14752 arg1Of conditions,Thermocycling
R11983 T14753 T14754 arg1Of conditions,for
R11984 T14753 T14762 arg1Of conditions,consisted
R11985 T14756 T14754 arg2Of Green,for
R11986 T14756 T14755 arg1Of Green,CYBR
R11987 T14756 T14757 arg1Of Green,(
R11988 T14758 T14757 arg2Of Quanta,(
R11989 T14758 T14759 arg1Of Quanta,","
R11990 T14758 T14760 arg1Of Quanta,USA
R11991 T14761 T14757 arg3Of ),(
R11992 T14762 T14763 arg1Of consisted,of
R11993 T14762 T14773 modOf consisted,followed
R11994 T14766 T14763 arg2Of step,of
R11995 T14766 T14764 arg1Of step,a
R11996 T14766 T14765 arg1Of step,denaturation
R11997 T14766 T14767 arg1Of step,for
R11998 T14769 T14767 arg2Of min,for
R11999 T14769 T14768 arg1Of min,10
R12000 T14769 T14770 arg1Of min,at
R12001 T14772 T14770 arg2Of °C,at
R12002 T14772 T14771 arg1Of °C,95
R12003 T14776 T14773 arg1Of cycles,followed
R12004 T14776 T14774 arg2Of cycles,by
R12005 T14776 T14775 arg1Of cycles,60
R12006 T14776 T14777 arg1Of cycles,of
R12007 T14778 T14777 arg2Of 95°C,of
R12008 T14778 T14779 arg1Of 95°C,for
R12009 T14780 T14781 arg1Of 1s,and
R12010 T14781 T14779 arg2Of and,for
R12011 T14782 T14781 arg2Of 60°C,and
R12012 T14782 T14783 arg1Of 60°C,for
R12013 T14784 T14783 arg2Of 30s,for
R12014 T14786 T14785 arg1Of expression,Gene
R12015 T14786 T14787 arg1Of expression,was
R12016 T14786 T14788 arg2Of expression,analysed
R12017 T14788 T14787 arg2Of analysed,was
R12018 T14788 T14789 modOf analysed,using
R12019 T14790 T14789 arg2Of Stratagene,using
R12020 T14790 T14791 arg1Of Stratagene,(
R12021 T14790 T14794 arg1Of Stratagene,(
R12022 T14792 T14791 arg2Of Mx3000p™,(
R12023 T14793 T14791 arg3Of ),(
R12024 T14796 T14794 arg2Of diagnostics,(
R12025 T14796 T14795 arg1Of diagnostics,AH
R12026 T14797 T14794 arg3Of ),(
R12027 T14801 T14798 arg1Of values,The
R12028 T14801 T14799 arg2Of values,obtained
R12029 T14801 T14800 arg1Of values,Ct
R12030 T14801 T14802 arg1Of values,were
R12031 T14801 T14803 arg2Of values,normalized
R12032 T14803 T14802 arg2Of normalized,were
R12033 T14803 T14804 arg1Of normalized,against
R12034 T14805 T14804 arg2Of 18S,against
R12035 T14812 T14808 arg1Of values,all
R12036 T14812 T14809 arg2Of values,measured
R12037 T14812 T14810 arg1Of values,18S
R12038 T14812 T14811 arg1Of values,Ct
R12039 T14812 T14813 arg1Of values,were
R12040 T14812 T14814 arg2Of values,used
R12041 T14814 T14806 arg1Of used,Initially
R12042 T14814 T14807 arg1Of used,","
R12043 T14814 T14813 arg2Of used,were
R12044 T14816 T14814 arg3Of calculate,used
R12045 T14816 T14815 arg1Of calculate,to
R12046 T14820 T14816 arg2Of value,calculate
R12047 T14820 T14817 arg1Of value,a
R12048 T14820 T14818 arg1Of value,mean
R12049 T14820 T14819 arg1Of value,Ct
R12050 T14820 T14821 arg1Of value,that
R12051 T14820 T14822 arg1Of value,was
R12052 T14820 T14823 arg2Of value,used
R12053 T14823 T14822 arg2Of used,was
R12054 T14823 T14824 modOf used,to
R12055 T14825 T14824 arg1Of determine,to
R12056 T14828 T14825 arg2Of values,determine
R12057 T14828 T14826 arg1Of values,the
R12058 T14828 T14827 arg1Of values,ΔCt
R12059 T14828 T14829 arg1Of values,for
R12060 T14831 T14829 arg2Of sample,for
R12061 T14831 T14830 arg1Of sample,each
R12062 T14834 T14832 arg1Of patterns,Gene
R12063 T14834 T14833 arg1Of patterns,expression
R12064 T14834 T14835 arg1Of patterns,for
R12065 T14834 T14839 arg1Of patterns,were
R12066 T14834 T14841 arg2Of patterns,normalized
R12067 T14836 T14837 arg1Of il-6,and
R12068 T14837 T14835 arg2Of and,for
R12069 T14838 T14837 arg2Of cxcl8,and
R12070 T14841 T14839 arg2Of normalized,were
R12071 T14841 T14840 arg1Of normalized,then
R12072 T14841 T14842 arg1Of normalized,with
R12073 T14843 T14842 arg2Of regard,with
R12074 T14843 T14844 arg1Of regard,to
R12075 T14848 T14844 arg2Of ΔCt,to
R12076 T14848 T14845 arg1Of ΔCt,the
R12077 T14848 T14846 arg1Of ΔCt,samples
R12078 T14848 T14847 arg1Of ΔCt,18S

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14532 0-7 VB denotes Reverse
T14533 8-21 NN denotes transcription
T14534 22-34 JJ denotes quantitative
T14535 35-38 NNP denotes PCR
T14536 39-40 -LRB- denotes (
T14537 40-47 NNP denotes RT-qPCR
T14538 47-48 -RRB- denotes )
T14539 49-56 NN denotes RT-qPCR
T14540 57-60 VBD denotes was
T14541 61-65 VBN denotes used
T14542 66-68 TO denotes to
T14543 69-78 VB denotes determine
T14544 79-83 NN denotes gene
T14545 84-94 NN denotes expression
T14546 95-101 NNS denotes levels
T14547 102-104 IN denotes of
T14548 105-109 JJ denotes il-6
T14549 110-113 CC denotes and
T14550 114-119 CD denotes cxcl8
T14551 120-122 IN denotes in
T14552 123-131 NN denotes response
T14553 132-134 TO denotes to
T14554 135-138 NNP denotes PMA
T14555 139-148 VBG denotes following
T14556 149-159 NN denotes inhibition
T14557 160-162 IN denotes of
T14558 163-168 NNP denotes NF-κB
T14559 168-169 , denotes ,
T14560 170-173 NNP denotes JNK
T14561 174-177 CC denotes and
T14562 178-181 NNP denotes PKC
T14563 181-182 . denotes .
T14564 183-186 DT denotes The
T14565 187-196 JJ denotes following
T14566 197-203 NN denotes primer
T14567 204-213 NNS denotes sequences
T14568 214-218 VBD denotes were
T14569 219-223 VBN denotes used
T14570 223-224 , denotes ,
T14571 225-229 JJ denotes il-6
T14572 229-230 : denotes :
T14573 231-238 RB denotes forward
T14574 238-239 : denotes -
T14575 240-264 NNP denotes TGTGAAAGCAGCAAAGAGGCACTG
T14576 264-265 , denotes ,
T14577 266-273 NN denotes reverse
T14578 273-274 : denotes -
T14579 275-299 NNP denotes ACAGCTCTGGCTTGTTCCTCACTA
T14580 299-300 : denotes ;
T14581 301-306 CD denotes cxcl8
T14582 306-307 : denotes :
T14583 308-315 RB denotes forward
T14584 315-316 : denotes -
T14585 317-341 NNP denotes ACCACACTGCGCCAACACAGAAAT
T14586 341-342 , denotes ,
T14587 343-350 NN denotes reverse
T14588 350-351 : denotes -
T14589 352-376 NNP denotes AAACTTCTCCACAACCCTCTGCAC
T14590 376-377 . denotes .
T14591 378-391 VBG denotes Thermocycling
T14592 392-402 NNS denotes conditions
T14593 403-406 IN denotes for
T14594 407-411 NNP denotes CYBR
T14595 412-417 NNP denotes Green
T14596 418-419 -LRB- denotes (
T14597 419-425 NNP denotes Quanta
T14598 425-426 , denotes ,
T14599 427-430 NNP denotes USA
T14600 430-431 -RRB- denotes )
T14601 432-441 VBD denotes consisted
T14602 442-444 IN denotes of
T14603 445-446 DT denotes a
T14604 447-459 NN denotes denaturation
T14605 460-464 NN denotes step
T14606 465-468 IN denotes for
T14607 469-471 CD denotes 10
T14608 472-475 NN denotes min
T14609 476-478 IN denotes at
T14610 479-481 CD denotes 95
T14611 482-483 CD denotes °
T14612 483-484 NNP denotes C
T14613 485-493 VBN denotes followed
T14614 494-496 IN denotes by
T14615 497-499 CD denotes 60
T14616 500-506 NNS denotes cycles
T14617 507-509 IN denotes of
T14618 510-512 CD denotes 95
T14619 512-513 CD denotes °
T14620 513-514 NNP denotes C
T14621 515-518 IN denotes for
T14622 519-521 NNS denotes 1s
T14623 522-525 CC denotes and
T14624 526-528 CD denotes 60
T14625 528-529 NN denotes °
T14626 529-530 NNP denotes C
T14627 531-534 IN denotes for
T14628 535-538 CD denotes 30s
T14629 538-539 . denotes .
T14630 540-544 NNP denotes Gene
T14631 545-555 NN denotes expression
T14632 556-559 VBD denotes was
T14633 560-568 VBN denotes analysed
T14634 569-574 VBG denotes using
T14635 575-585 NNP denotes Stratagene
T14636 586-587 -LRB- denotes (
T14637 587-594 NNP denotes Mx3000p
T14638 594-595 NNP denotes ™
T14639 595-596 -RRB- denotes )
T14640 597-598 -LRB- denotes (
T14641 598-600 NNP denotes AH
T14642 601-612 NNS denotes diagnostics
T14643 612-613 -RRB- denotes )
T14644 613-614 . denotes .
T14645 615-618 DT denotes The
T14646 619-627 VBN denotes obtained
T14647 628-630 NNP denotes Ct
T14648 631-637 NNS denotes values
T14649 638-642 VBD denotes were
T14650 643-653 VBN denotes normalized
T14651 654-661 IN denotes against
T14652 662-665 NNP denotes 18S
T14653 665-666 . denotes .
T14654 667-676 RB denotes Initially
T14655 676-677 , denotes ,
T14656 678-681 DT denotes all
T14657 682-690 VBN denotes measured
T14658 691-694 NNP denotes 18S
T14659 695-697 NNP denotes Ct
T14660 698-704 NNS denotes values
T14661 705-709 VBD denotes were
T14662 710-714 VBN denotes used
T14663 715-717 TO denotes to
T14664 718-727 VB denotes calculate
T14665 728-729 DT denotes a
T14666 730-734 JJ denotes mean
T14667 735-737 JJ denotes Ct
T14668 738-743 NN denotes value
T14669 744-748 WDT denotes that
T14670 749-752 VBD denotes was
T14671 753-757 VBN denotes used
T14672 758-760 TO denotes to
T14673 761-770 VB denotes determine
T14674 771-774 DT denotes the
T14675 775-778 NNP denotes ΔCt
T14676 779-785 NNS denotes values
T14677 786-789 IN denotes for
T14678 790-794 DT denotes each
T14679 795-801 NN denotes sample
T14680 801-802 . denotes .
T14681 803-807 NNP denotes Gene
T14682 808-818 NN denotes expression
T14683 819-827 NNS denotes patterns
T14684 828-831 IN denotes for
T14685 832-836 JJ denotes il-6
T14686 837-840 CC denotes and
T14687 841-846 CD denotes cxcl8
T14688 847-851 VBD denotes were
T14689 852-856 RB denotes then
T14690 857-867 VBN denotes normalized
T14691 868-872 IN denotes with
T14692 873-879 NN denotes regard
T14693 880-882 TO denotes to
T14694 883-886 DT denotes the
T14695 887-894 NNS denotes samples
T14696 895-898 NNP denotes 18S
T14697 899-902 NNP denotes ΔCt
T14698 902-903 . denotes .
R11763 T14532 T14541 advcl Reverse,used
R11764 T14533 T14532 dobj transcription,Reverse
R11765 T14534 T14535 amod quantitative,PCR
R11766 T14535 T14539 nmod PCR,RT-qPCR
R11767 T14536 T14535 punct (,PCR
R11768 T14537 T14535 appos RT-qPCR,PCR
R11769 T14538 T14535 punct ),PCR
R11770 T14539 T14541 nsubjpass RT-qPCR,used
R11771 T14540 T14541 auxpass was,used
R11772 T14541 T14541 ROOT used,used
R11773 T14542 T14543 aux to,determine
R11774 T14543 T14541 xcomp determine,used
R11775 T14544 T14545 compound gene,expression
R11776 T14545 T14546 compound expression,levels
R11777 T14546 T14543 dobj levels,determine
R11778 T14547 T14546 prep of,levels
R11779 T14548 T14547 pobj il-6,of
R11780 T14549 T14548 cc and,il-6
R11781 T14550 T14548 conj cxcl8,il-6
R11782 T14551 T14543 prep in,determine
R11783 T14552 T14551 pobj response,in
R11784 T14553 T14552 prep to,response
R11785 T14554 T14555 neg PMA,following
R11786 T14555 T14541 prep following,used
R11787 T14556 T14555 dobj inhibition,following
R11788 T14557 T14556 prep of,inhibition
R11789 T14558 T14557 pobj NF-κB,of
R11790 T14559 T14558 punct ",",NF-κB
R11791 T14560 T14558 conj JNK,NF-κB
R11792 T14561 T14560 cc and,JNK
R11793 T14562 T14560 conj PKC,JNK
R11794 T14563 T14541 punct .,used
R11795 T14564 T14567 det The,sequences
R11796 T14565 T14567 amod following,sequences
R11797 T14566 T14567 compound primer,sequences
R11798 T14567 T14569 nsubjpass sequences,used
R11799 T14568 T14569 auxpass were,used
R11800 T14569 T14569 ROOT used,used
R11801 T14570 T14579 punct ",",ACAGCTCTGGCTTGTTCCTCACTA
R11802 T14571 T14579 amod il-6,ACAGCTCTGGCTTGTTCCTCACTA
R11803 T14572 T14579 punct :,ACAGCTCTGGCTTGTTCCTCACTA
R11804 T14573 T14579 advmod forward,ACAGCTCTGGCTTGTTCCTCACTA
R11805 T14574 T14575 punct -,TGTGAAAGCAGCAAAGAGGCACTG
R11806 T14575 T14579 nmod TGTGAAAGCAGCAAAGAGGCACTG,ACAGCTCTGGCTTGTTCCTCACTA
R11807 T14576 T14577 punct ",",reverse
R11808 T14577 T14579 nmod reverse,ACAGCTCTGGCTTGTTCCTCACTA
R11809 T14578 T14579 punct -,ACAGCTCTGGCTTGTTCCTCACTA
R11810 T14579 T14569 dobj ACAGCTCTGGCTTGTTCCTCACTA,used
R11811 T14580 T14579 punct ;,ACAGCTCTGGCTTGTTCCTCACTA
R11812 T14581 T14585 nummod cxcl8,ACCACACTGCGCCAACACAGAAAT
R11813 T14582 T14585 punct :,ACCACACTGCGCCAACACAGAAAT
R11814 T14583 T14585 meta forward,ACCACACTGCGCCAACACAGAAAT
R11815 T14584 T14585 punct -,ACCACACTGCGCCAACACAGAAAT
R11816 T14585 T14579 appos ACCACACTGCGCCAACACAGAAAT,ACAGCTCTGGCTTGTTCCTCACTA
R11817 T14586 T14587 punct ",",reverse
R11818 T14587 T14589 nmod reverse,AAACTTCTCCACAACCCTCTGCAC
R11819 T14588 T14589 punct -,AAACTTCTCCACAACCCTCTGCAC
R11820 T14589 T14585 dobj AAACTTCTCCACAACCCTCTGCAC,ACCACACTGCGCCAACACAGAAAT
R11821 T14590 T14569 punct .,used
R11822 T14591 T14601 csubj Thermocycling,consisted
R11823 T14592 T14591 dobj conditions,Thermocycling
R11824 T14593 T14601 mark for,consisted
R11825 T14594 T14595 compound CYBR,Green
R11826 T14595 T14593 pobj Green,for
R11827 T14596 T14597 punct (,Quanta
R11828 T14597 T14595 appos Quanta,Green
R11829 T14598 T14597 punct ",",Quanta
R11830 T14599 T14597 appos USA,Quanta
R11831 T14600 T14597 punct ),Quanta
R11832 T14601 T14601 ROOT consisted,consisted
R11833 T14602 T14601 prep of,consisted
R11834 T14603 T14605 det a,step
R11835 T14604 T14605 compound denaturation,step
R11836 T14605 T14602 pobj step,of
R11837 T14606 T14605 prep for,step
R11838 T14607 T14608 nummod 10,min
R11839 T14608 T14606 pobj min,for
R11840 T14609 T14601 prep at,consisted
R11841 T14610 T14609 pobj 95,at
R11842 T14611 T14612 nummod °,C
R11843 T14612 T14601 dobj C,consisted
R11844 T14613 T14601 advcl followed,consisted
R11845 T14614 T14613 agent by,followed
R11846 T14615 T14616 nummod 60,cycles
R11847 T14616 T14614 pobj cycles,by
R11848 T14617 T14616 prep of,cycles
R11849 T14618 T14620 nummod 95,C
R11850 T14619 T14620 nummod °,C
R11851 T14620 T14617 pobj C,of
R11852 T14621 T14613 prep for,followed
R11853 T14622 T14621 pobj 1s,for
R11854 T14623 T14622 cc and,1s
R11855 T14624 T14625 nummod 60,°
R11856 T14625 T14626 compound °,C
R11857 T14626 T14622 conj C,1s
R11858 T14627 T14613 prep for,followed
R11859 T14628 T14627 pobj 30s,for
R11860 T14629 T14601 punct .,consisted
R11861 T14630 T14631 compound Gene,expression
R11862 T14631 T14633 nsubjpass expression,analysed
R11863 T14632 T14633 auxpass was,analysed
R11864 T14633 T14633 ROOT analysed,analysed
R11865 T14634 T14633 advcl using,analysed
R11866 T14635 T14634 dobj Stratagene,using
R11867 T14636 T14638 punct (,™
R11868 T14637 T14638 compound Mx3000p,™
R11869 T14638 T14635 appos ™,Stratagene
R11870 T14639 T14638 punct ),™
R11871 T14640 T14642 punct (,diagnostics
R11872 T14641 T14642 compound AH,diagnostics
R11873 T14642 T14638 appos diagnostics,™
R11874 T14643 T14638 punct ),™
R11875 T14644 T14633 punct .,analysed
R11876 T14645 T14648 det The,values
R11877 T14646 T14648 amod obtained,values
R11878 T14647 T14648 amod Ct,values
R11879 T14648 T14649 nsubj values,were
R11880 T14649 T14649 ROOT were,were
R11881 T14650 T14649 acomp normalized,were
R11882 T14651 T14650 prep against,normalized
R11883 T14652 T14651 pobj 18S,against
R11884 T14653 T14649 punct .,were
R11885 T14654 T14662 advmod Initially,used
R11886 T14655 T14662 punct ",",used
R11887 T14656 T14660 det all,values
R11888 T14657 T14660 amod measured,values
R11889 T14658 T14660 compound 18S,values
R11890 T14659 T14660 compound Ct,values
R11891 T14660 T14662 nsubjpass values,used
R11892 T14661 T14662 auxpass were,used
R11893 T14662 T14662 ROOT used,used
R11894 T14663 T14664 aux to,calculate
R11895 T14664 T14662 xcomp calculate,used
R11896 T14665 T14668 det a,value
R11897 T14666 T14668 amod mean,value
R11898 T14667 T14668 amod Ct,value
R11899 T14668 T14664 dobj value,calculate
R11900 T14669 T14671 nsubjpass that,used
R11901 T14670 T14671 auxpass was,used
R11902 T14671 T14668 relcl used,value
R11903 T14672 T14673 aux to,determine
R11904 T14673 T14671 xcomp determine,used
R11905 T14674 T14676 det the,values
R11906 T14675 T14676 compound ΔCt,values
R11907 T14676 T14673 dobj values,determine
R11908 T14677 T14676 prep for,values
R11909 T14678 T14679 det each,sample
R11910 T14679 T14677 pobj sample,for
R11911 T14680 T14662 punct .,used
R11912 T14681 T14683 compound Gene,patterns
R11913 T14682 T14683 compound expression,patterns
R11914 T14683 T14690 nsubjpass patterns,normalized
R11915 T14684 T14683 prep for,patterns
R11916 T14685 T14684 pobj il-6,for
R11917 T14686 T14685 cc and,il-6
R11918 T14687 T14685 nummod cxcl8,il-6
R11919 T14688 T14690 auxpass were,normalized
R11920 T14689 T14690 advmod then,normalized
R11921 T14690 T14690 ROOT normalized,normalized
R11922 T14691 T14690 prep with,normalized
R11923 T14692 T14691 pobj regard,with
R11924 T14693 T14692 prep to,regard
R11925 T14694 T14695 det the,samples
R11926 T14695 T14693 pobj samples,to
R11927 T14696 T14697 compound 18S,ΔCt
R11928 T14697 T14695 appos ΔCt,samples
R11929 T14698 T14690 punct .,normalized

GO-BP

Id Subject Object Predicate Lexical cue
T14863 0-21 http://purl.obolibrary.org/obo/GO_0001171 denotes Reverse transcription
T14864 8-21 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T14865 40-42 http://purl.obolibrary.org/obo/GO_0003964 denotes RT
T14866 49-51 http://purl.obolibrary.org/obo/GO_0003964 denotes RT
T14867 79-94 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T14868 540-555 http://purl.obolibrary.org/obo/GO_0010467 denotes Gene expression
T14869 803-818 http://purl.obolibrary.org/obo/GO_0010467 denotes Gene expression
T14870 123-138 http://purl.obolibrary.org/obo/GO_1904627 denotes response to PMA
T14871 170-173 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T14872 178-181 http://purl.obolibrary.org/obo/GO_0004697 denotes PKC
T14873 598-600 http://purl.obolibrary.org/obo/GO_0018818 denotes AH

GO-MF

Id Subject Object Predicate Lexical cue
T14874 40-42 http://purl.obolibrary.org/obo/GO_0003964 denotes RT
T14875 49-51 http://purl.obolibrary.org/obo/GO_0003964 denotes RT
T14876 170-173 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T14877 178-181 http://purl.obolibrary.org/obo/GO_0004697 denotes PKC
T14878 598-600 http://purl.obolibrary.org/obo/GO_0018818 denotes AH

sentences

Id Subject Object Predicate Lexical cue
T14524 0-48 Sentence denotes Reverse transcription quantitative PCR (RT-qPCR)
T14525 49-182 Sentence denotes RT-qPCR was used to determine gene expression levels of il-6 and cxcl8 in response to PMA following inhibition of NF-κB, JNK and PKC.
T14526 183-377 Sentence denotes The following primer sequences were used, il-6: forward- TGTGAAAGCAGCAAAGAGGCACTG, reverse- ACAGCTCTGGCTTGTTCCTCACTA; cxcl8: forward- ACCACACTGCGCCAACACAGAAAT, reverse- AAACTTCTCCACAACCCTCTGCAC.
T14527 378-539 Sentence denotes Thermocycling conditions for CYBR Green (Quanta, USA) consisted of a denaturation step for 10 min at 95 °C followed by 60 cycles of 95°C for 1s and 60°C for 30s.
T14528 540-614 Sentence denotes Gene expression was analysed using Stratagene (Mx3000p™) (AH diagnostics).
T14529 615-666 Sentence denotes The obtained Ct values were normalized against 18S.
T14530 667-802 Sentence denotes Initially, all measured 18S Ct values were used to calculate a mean Ct value that was used to determine the ΔCt values for each sample.
T14531 803-903 Sentence denotes Gene expression patterns for il-6 and cxcl8 were then normalized with regard to the samples 18S ΔCt.
T233 0-48 Sentence denotes Reverse transcription quantitative PCR (RT-qPCR)
T234 49-182 Sentence denotes RT-qPCR was used to determine gene expression levels of il-6 and cxcl8 in response to PMA following inhibition of NF-κB, JNK and PKC.
T235 183-377 Sentence denotes The following primer sequences were used, il-6: forward- TGTGAAAGCAGCAAAGAGGCACTG, reverse- ACAGCTCTGGCTTGTTCCTCACTA; cxcl8: forward- ACCACACTGCGCCAACACAGAAAT, reverse- AAACTTCTCCACAACCCTCTGCAC.
T236 378-539 Sentence denotes Thermocycling conditions for CYBR Green (Quanta, USA) consisted of a denaturation step for 10 min at 95 °C followed by 60 cycles of 95°C for 1s and 60°C for 30s.
T237 540-614 Sentence denotes Gene expression was analysed using Stratagene (Mx3000p™) (AH diagnostics).
T238 615-666 Sentence denotes The obtained Ct values were normalized against 18S.
T239 667-802 Sentence denotes Initially, all measured 18S Ct values were used to calculate a mean Ct value that was used to determine the ΔCt values for each sample.
T240 803-903 Sentence denotes Gene expression patterns for il-6 and cxcl8 were then normalized with regard to the samples 18S ΔCt.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T14939 84-94 Gene_expression denotes expression
T14940 84-94 Gene_expression denotes expression
T14941 105-109 Protein denotes il-6
T14942 114-119 Protein denotes cxcl8
T14943 120-134 Positive_regulation denotes in response to
T14944 120-134 Positive_regulation denotes in response to
T14945 139-148 Positive_regulation denotes following true
T14946 139-148 Positive_regulation denotes following true
T14947 225-229 Protein denotes il-6
T14948 301-306 Protein denotes cxcl8
T14949 808-818 Gene_expression denotes expression true
T14950 808-818 Gene_expression denotes expression true
T14951 832-836 Protein denotes il-6
T14952 841-846 Protein denotes cxcl8
R12113 T14939 T14944 themeOf expression,in response to
R12114 T14940 T14943 themeOf expression,in response to
R12115 T14941 T14940 themeOf il-6,expression
R12116 T14942 T14939 themeOf cxcl8,expression
R12117 T14943 T14946 themeOf in response to,following
R12118 T14944 T14945 themeOf in response to,following
R12119 T14951 T14950 themeOf il-6,expression
R12120 T14952 T14949 themeOf cxcl8,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T14953 163-168 Protein denotes NF-κB
T14954 170-173 Protein denotes JNK
T14955 178-181 Protein denotes PKC
T14956 149-159 Negative_regulation denotes inhibition
T14957 149-159 Negative_regulation denotes inhibition
T14958 149-159 Negative_regulation denotes inhibition
T14959 407-411 Protein denotes CYBR
T14960 887-902 Protein denotes samples 18S ΔCt
R12121 T14953 T14956 themeOf NF-κB,inhibition
R12122 T14954 T14957 themeOf JNK,inhibition
R12123 T14955 T14958 themeOf PKC,inhibition

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T14510 84-94 Gene_expression denotes expression
T14511 84-94 Gene_expression denotes expression
T14512 105-109 Protein denotes il-6
T14513 114-119 Protein denotes cxcl8
T14514 120-134 Positive_regulation denotes in response to
T14515 120-134 Positive_regulation denotes in response to
T14516 139-148 Positive_regulation denotes following true
T14517 139-148 Positive_regulation denotes following true
T14518 225-229 Protein denotes il-6
T14519 301-306 Protein denotes cxcl8
T14520 808-818 Gene_expression denotes expression true
T14521 808-818 Gene_expression denotes expression true
T14522 832-836 Protein denotes il-6
T14523 841-846 Protein denotes cxcl8
R11755 T14510 T14515 themeOf expression,in response to
R11756 T14511 T14514 themeOf expression,in response to
R11757 T14512 T14511 themeOf il-6,expression
R11758 T14513 T14510 themeOf cxcl8,expression
R11759 T14514 T14517 themeOf in response to,following
R11760 T14515 T14516 themeOf in response to,following
R11761 T14522 T14521 themeOf il-6,expression
R11762 T14523 T14520 themeOf cxcl8,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14849 105-109 P05231 denotes il-6
T14850 114-119 P10145 denotes cxcl8
T14851 225-229 P05231 denotes il-6
T14852 301-306 P10145 denotes cxcl8
T14853 832-836 P05231 denotes il-6
T14854 841-846 P10145 denotes cxcl8

test2

Id Subject Object Predicate Lexical cue Speculation
T14501 84-94 Gene_expression denotes expression
T14502 105-109 Protein denotes il-6
T14503 114-119 Protein denotes cxcl8
T14504 120-134 Positive_regulation denotes in response to
T14505 225-229 Protein denotes il-6 true
T14506 301-306 Protein denotes cxcl8 true
T14507 808-818 Gene_expression denotes expression true
T14508 832-836 Protein denotes il-6 true
T14509 841-846 Protein denotes cxcl8
R11748 T14501 T14504 themeOf expression,in response to
R11749 T14502 T14501 themeOf il-6,expression
R11750 T14502 T14504 themeOf il-6,in response to
R11751 T14503 T14504 themeOf cxcl8,in response to
R11752 T14503 T14501 themeOf cxcl8,expression
R11753 T14508 T14507 themeOf il-6,expression
R11754 T14509 T14507 themeOf cxcl8,expression