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PMC:2889865 / 11628-12156 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15991 10-20 NN denotes Inhibition
T15992 21-23 IN denotes of
T15993 24-29 NN denotes NF-κB
T15994 30-38 NN denotes activity
T15995 39-41 IN denotes by
T15996 42-45 NN denotes NAI
T15997 47-53 NN denotes Jurkat
T15998 54-61 NN denotes T-cells
T15999 62-66 VB denotes were
T16000 67-78 VB denotes transfected
T16001 79-83 IN denotes with
T16002 84-94 NN denotes luciferase
T16003 95-103 NN denotes reporter
T16004 104-112 NN denotes plasmids
T16005 113-123 VB denotes containing
T16006 124-130 CC denotes either
T16007 131-136 NN denotes NF-κB
T16008 137-139 CC denotes or
T16009 140-144 NN denotes AP-1
T16010 145-155 JJ denotes cis-acting
T16011 156-164 NN denotes elements
T16012 166-169 DT denotes The
T16013 170-175 NN denotes cells
T16014 176-180 VB denotes were
T16015 181-190 VB denotes incubated
T16016 191-195 IN denotes with
T16017 196-201 NN denotes NF-κB
T16018 202-212 NN denotes activation
T16019 213-222 NN denotes inhibitor
T16020 223-224 -LRB- denotes (
T16021 224-227 NN denotes NAI
T16022 227-228 -RRB- denotes )
T16023 229-232 IN denotes for
T16024 233-234 CD denotes 1
T16025 235-236 NN denotes h
T16026 237-245 VB denotes followed
T16027 246-248 IN denotes by
T16028 249-260 NN denotes stimulation
T16029 261-265 IN denotes with
T16030 266-269 NN denotes PMA
T16031 270-271 -LRB- denotes (
T16032 271-274 CD denotes 162
T16033 275-277 NN denotes nM
T16034 277-278 -COMMA- denotes ,
T16035 279-280 NN denotes A
T16036 281-284 CC denotes and
T16037 285-286 NN denotes C
T16038 286-287 -RRB- denotes )
T16039 288-290 CC denotes or
T16040 291-293 NN denotes HK
T16041 294-296 FW denotes E.
T16042 297-301 FW denotes coli
T16043 302-303 -LRB- denotes (
T16044 303-304 CD denotes 5
T16045 305-306 NN denotes ×
T16046 307-310 CD denotes 107
T16047 311-317 NNP denotes CFU/ml
T16048 317-318 -COMMA- denotes ,
T16049 319-320 NN denotes B
T16050 321-324 CC denotes and
T16051 325-326 NN denotes D
T16052 326-327 -RRB- denotes )
T16053 328-331 IN denotes for
T16054 332-334 CD denotes 24
T16055 335-337 NN denotes h.
T16056 338-339 -LRB- denotes (
T16057 339-340 NN denotes A
T16058 340-341 -COMMA- denotes ,
T16059 342-343 NN denotes B
T16060 343-344 -RRB- denotes )
T16061 345-350 NN denotes NF-κB
T16062 350-351 -COMMA- denotes ,
T16063 352-355 CC denotes but
T16064 356-359 RB denotes not
T16065 360-361 -LRB- denotes (
T16066 361-362 NN denotes C
T16067 362-363 -COMMA- denotes ,
T16068 364-365 NN denotes D
T16069 365-366 -RRB- denotes )
T16070 367-371 NN denotes AP-1
T16071 372-375 VB denotes was
T16072 376-385 VB denotes inhibited
T16073 387-398 JJ denotes Statistical
T16074 399-411 NN denotes significance
T16075 412-416 IN denotes from
T16076 417-420 DT denotes the
T16077 421-429 JJ denotes positive
T16078 430-437 NN denotes control
T16079 438-439 -LRB- denotes (
T16080 439-445 NN denotes PMA/HK
T16081 446-448 FW denotes E.
T16082 449-453 FW denotes coli
T16083 453-454 -RRB- denotes )
T16084 455-458 VB denotes was
T16085 459-469 VB denotes determined
T16086 470-475 VB denotes using
T16087 476-483 NN denotes Student
T16088 483-485 POS denotes 's
T16089 486-493 NN denotes t-test.
T16090 494-495 -LRB- denotes (
T16091 495-496 NN denotes n
T16092 497-498 SYM denotes =
T16093 499-500 CD denotes 4
T16094 500-501 -RRB- denotes )
T16095 503-511 NN denotes Controls
T16096 512-516 VB denotes were
T16097 517-520 VB denotes set
T16098 521-523 TO denotes to
T16099 524-525 CD denotes 1
R13004 T15991 T15992 arg1Of Inhibition,of
R13005 T15991 T15995 arg1Of Inhibition,by
R13006 T15994 T15992 arg2Of activity,of
R13007 T15994 T15993 arg1Of activity,NF-κB
R13008 T15996 T15995 arg2Of NAI,by
R13009 T15998 T15997 arg1Of T-cells,Jurkat
R13010 T15998 T15999 arg1Of T-cells,were
R13011 T15998 T16000 arg2Of T-cells,transfected
R13012 T16000 T15999 arg2Of transfected,were
R13013 T16000 T16001 arg1Of transfected,with
R13014 T16004 T16001 arg2Of plasmids,with
R13015 T16004 T16002 arg1Of plasmids,luciferase
R13016 T16004 T16003 arg1Of plasmids,reporter
R13017 T16004 T16005 arg1Of plasmids,containing
R13018 T16007 T16008 arg1Of NF-κB,or
R13019 T16009 T16008 arg2Of AP-1,or
R13020 T16011 T16005 arg2Of elements,containing
R13021 T16011 T16006 arg1Of elements,either
R13022 T16011 T16007 arg1Of elements,NF-κB
R13023 T16011 T16009 arg1Of elements,AP-1
R13024 T16011 T16010 arg1Of elements,cis-acting
R13025 T16013 T16012 arg1Of cells,The
R13026 T16013 T16014 arg1Of cells,were
R13027 T16013 T16015 arg2Of cells,incubated
R13028 T16015 T16014 arg2Of incubated,were
R13029 T16015 T16016 arg1Of incubated,with
R13030 T16015 T16026 modOf incubated,followed
R13031 T16015 T16063 arg1Of incubated,but
R13032 T16019 T16016 arg2Of inhibitor,with
R13033 T16019 T16017 arg1Of inhibitor,NF-κB
R13034 T16019 T16018 arg1Of inhibitor,activation
R13035 T16019 T16020 arg1Of inhibitor,(
R13036 T16019 T16023 arg1Of inhibitor,for
R13037 T16021 T16020 arg2Of NAI,(
R13038 T16022 T16020 arg3Of ),(
R13039 T16025 T16023 arg2Of h,for
R13040 T16025 T16024 arg1Of h,1
R13041 T16028 T16026 arg1Of stimulation,followed
R13042 T16028 T16027 arg2Of stimulation,by
R13043 T16028 T16029 arg1Of stimulation,with
R13044 T16030 T16031 arg1Of PMA,(
R13045 T16030 T16039 arg1Of PMA,or
R13046 T16033 T16032 arg1Of nM,162
R13047 T16033 T16034 arg1Of nM,","
R13048 T16034 T16036 arg1Of ",",and
R13049 T16035 T16034 arg2Of A,","
R13050 T16036 T16031 arg2Of and,(
R13051 T16037 T16036 arg2Of C,and
R13052 T16038 T16031 arg3Of ),(
R13053 T16039 T16029 arg2Of or,with
R13054 T16042 T16040 arg1Of coli,HK
R13055 T16042 T16041 arg1Of coli,E.
R13056 T16042 T16043 arg1Of coli,(
R13057 T16042 T16053 arg1Of coli,for
R13058 T16042 T16056 arg1Of coli,(
R13059 T16047 T16048 arg1Of CFU/ml,","
R13060 T16048 T16050 arg1Of ",",and
R13061 T16049 T16048 arg2Of B,","
R13062 T16050 T16043 arg2Of and,(
R13063 T16050 T16044 arg1Of and,5
R13064 T16050 T16045 arg1Of and,×
R13065 T16050 T16046 arg1Of and,107
R13066 T16051 T16050 arg2Of D,and
R13067 T16052 T16043 arg3Of ),(
R13068 T16055 T16053 arg2Of h.,for
R13069 T16055 T16054 arg1Of h.,24
R13070 T16057 T16056 arg2Of A,(
R13071 T16057 T16058 arg1Of A,","
R13072 T16059 T16058 arg2Of B,","
R13073 T16060 T16056 arg3Of ),(
R13074 T16061 T16039 arg2Of NF-κB,or
R13075 T16061 T16042 arg1Of NF-κB,coli
R13076 T16063 T16062 arg1Of but,","
R13077 T16063 T16064 arg1Of but,not
R13078 T16066 T16065 arg2Of C,(
R13079 T16066 T16067 arg1Of C,","
R13080 T16068 T16067 arg2Of D,","
R13081 T16069 T16065 arg3Of ),(
R13082 T16070 T16065 arg1Of AP-1,(
R13083 T16070 T16071 arg1Of AP-1,was
R13084 T16070 T16072 arg2Of AP-1,inhibited
R13085 T16072 T16063 arg2Of inhibited,but
R13086 T16072 T16071 arg2Of inhibited,was
R13087 T16074 T16073 arg1Of significance,Statistical
R13088 T16074 T16075 arg1Of significance,from
R13089 T16074 T16084 arg1Of significance,was
R13090 T16074 T16085 arg2Of significance,determined
R13091 T16078 T16075 arg2Of control,from
R13092 T16078 T16076 arg1Of control,the
R13093 T16078 T16077 arg1Of control,positive
R13094 T16078 T16079 arg1Of control,(
R13095 T16082 T16079 arg2Of coli,(
R13096 T16082 T16080 arg1Of coli,PMA/HK
R13097 T16082 T16081 arg1Of coli,E.
R13098 T16083 T16079 arg3Of ),(
R13099 T16085 T16084 arg2Of determined,was
R13100 T16086 T16085 arg3Of using,determined
R13101 T16087 T16088 arg2Of Student,'s
R13102 T16089 T16086 arg2Of t-test.,using
R13103 T16089 T16088 arg1Of t-test.,'s
R13104 T16089 T16090 arg1Of t-test.,(
R13105 T16091 T16090 arg2Of n,(
R13106 T16091 T16092 arg1Of n,=
R13107 T16091 T16093 arg1Of n,4
R13108 T16094 T16090 arg3Of ),(
R13109 T16095 T16096 arg1Of Controls,were
R13110 T16095 T16097 arg2Of Controls,set
R13111 T16097 T16096 arg2Of set,were
R13112 T16097 T16098 arg1Of set,to
R13113 T16099 T16098 arg2Of 1,to

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15876 10-20 NNP denotes Inhibition
T15877 21-23 IN denotes of
T15878 24-29 JJ denotes NF-κB
T15879 30-38 NN denotes activity
T15880 39-41 IN denotes by
T15881 42-45 NNP denotes NAI
T15882 45-46 . denotes .
T15883 47-53 NNP denotes Jurkat
T15884 54-61 NNS denotes T-cells
T15885 62-66 VBD denotes were
T15886 67-78 VBN denotes transfected
T15887 79-83 IN denotes with
T15888 84-94 NN denotes luciferase
T15889 95-103 NN denotes reporter
T15890 104-112 NNS denotes plasmids
T15891 113-123 VBG denotes containing
T15892 124-130 CC denotes either
T15893 131-136 NNP denotes NF-κB
T15894 137-139 CC denotes or
T15895 140-144 NNP denotes AP-1
T15896 145-155 JJ denotes cis-acting
T15897 156-164 NNS denotes elements
T15898 164-165 . denotes .
T15899 166-169 DT denotes The
T15900 170-175 NNS denotes cells
T15901 176-180 VBD denotes were
T15902 181-190 VBN denotes incubated
T15903 191-195 IN denotes with
T15904 196-201 JJ denotes NF-κB
T15905 202-212 NN denotes activation
T15906 213-222 NN denotes inhibitor
T15907 223-224 -LRB- denotes (
T15908 224-227 NNP denotes NAI
T15909 227-228 -RRB- denotes )
T15910 229-232 IN denotes for
T15911 233-234 CD denotes 1
T15912 235-236 NN denotes h
T15913 237-245 VBN denotes followed
T15914 246-248 IN denotes by
T15915 249-260 NN denotes stimulation
T15916 261-265 IN denotes with
T15917 266-269 NNP denotes PMA
T15918 270-271 -LRB- denotes (
T15919 271-274 CD denotes 162
T15920 275-277 NNP denotes nM
T15921 277-278 , denotes ,
T15922 279-280 NNP denotes A
T15923 281-284 CC denotes and
T15924 285-286 NNP denotes C
T15925 286-287 -RRB- denotes )
T15926 288-290 CC denotes or
T15927 291-293 NNP denotes HK
T15928 294-296 NNP denotes E.
T15929 297-301 NNS denotes coli
T15930 302-303 -LRB- denotes (
T15931 303-304 CD denotes 5
T15932 305-306 CD denotes ×
T15933 307-310 CD denotes 107
T15934 311-317 NNP denotes CFU/ml
T15935 317-318 , denotes ,
T15936 319-320 NNP denotes B
T15937 321-324 CC denotes and
T15938 325-326 NNP denotes D
T15939 326-327 -RRB- denotes )
T15940 328-331 IN denotes for
T15941 332-334 CD denotes 24
T15942 335-337 NN denotes h.
T15943 338-339 -LRB- denotes (
T15944 339-340 DT denotes A
T15945 340-341 , denotes ,
T15946 342-343 NNP denotes B
T15947 343-344 -RRB- denotes )
T15948 345-350 NNP denotes NF-κB
T15949 350-351 , denotes ,
T15950 352-355 CC denotes but
T15951 356-359 RB denotes not
T15952 360-361 -LRB- denotes (
T15953 361-362 NNP denotes C
T15954 362-363 , denotes ,
T15955 364-365 NNP denotes D
T15956 365-366 -RRB- denotes )
T15957 367-371 NN denotes AP-1
T15958 372-375 VBD denotes was
T15959 376-385 VBN denotes inhibited
T15960 385-386 . denotes .
T15961 387-398 NNP denotes Statistical
T15962 399-411 NN denotes significance
T15963 412-416 IN denotes from
T15964 417-420 DT denotes the
T15965 421-429 JJ denotes positive
T15966 430-437 NN denotes control
T15967 438-439 -LRB- denotes (
T15968 439-445 NNP denotes PMA/HK
T15969 446-448 NNP denotes E.
T15970 449-453 NNS denotes coli
T15971 453-454 -RRB- denotes )
T15972 455-458 VBD denotes was
T15973 459-469 VBN denotes determined
T15974 470-475 VBG denotes using
T15975 476-483 NN denotes Student
T15976 483-485 POS denotes 's
T15977 486-492 JJS denotes t-test
T15978 492-493 . denotes .
T15979 494-495 -LRB- denotes (
T15980 495-496 FW denotes n
T15981 497-498 SYM denotes =
T15982 499-500 LS denotes 4
T15983 500-501 -RRB- denotes )
T15984 501-502 . denotes .
T15985 503-511 NNP denotes Controls
T15986 512-516 VBD denotes were
T15987 517-520 VBN denotes set
T15988 521-523 TO denotes to
T15989 524-525 CD denotes 1
T15990 525-526 . denotes .
R12889 T15876 T15876 ROOT Inhibition,Inhibition
R12890 T15877 T15876 prep of,Inhibition
R12891 T15878 T15879 amod NF-κB,activity
R12892 T15879 T15877 pobj activity,of
R12893 T15880 T15879 prep by,activity
R12894 T15881 T15880 pobj NAI,by
R12895 T15882 T15876 punct .,Inhibition
R12896 T15883 T15884 compound Jurkat,T-cells
R12897 T15884 T15886 nsubjpass T-cells,transfected
R12898 T15885 T15886 auxpass were,transfected
R12899 T15886 T15886 ROOT transfected,transfected
R12900 T15887 T15886 prep with,transfected
R12901 T15888 T15889 compound luciferase,reporter
R12902 T15889 T15890 compound reporter,plasmids
R12903 T15890 T15887 pobj plasmids,with
R12904 T15891 T15890 acl containing,plasmids
R12905 T15892 T15893 preconj either,NF-κB
R12906 T15893 T15897 nmod NF-κB,elements
R12907 T15894 T15893 cc or,NF-κB
R12908 T15895 T15893 conj AP-1,NF-κB
R12909 T15896 T15897 amod cis-acting,elements
R12910 T15897 T15891 dobj elements,containing
R12911 T15898 T15886 punct .,transfected
R12912 T15899 T15900 det The,cells
R12913 T15900 T15902 nsubjpass cells,incubated
R12914 T15901 T15902 auxpass were,incubated
R12915 T15902 T15902 ROOT incubated,incubated
R12916 T15903 T15902 prep with,incubated
R12917 T15904 T15906 amod NF-κB,inhibitor
R12918 T15905 T15906 compound activation,inhibitor
R12919 T15906 T15903 pobj inhibitor,with
R12920 T15907 T15906 punct (,inhibitor
R12921 T15908 T15906 appos NAI,inhibitor
R12922 T15909 T15906 punct ),inhibitor
R12923 T15910 T15902 prep for,incubated
R12924 T15911 T15912 nummod 1,h
R12925 T15912 T15910 pobj h,for
R12926 T15913 T15912 acl followed,h
R12927 T15914 T15913 agent by,followed
R12928 T15915 T15914 pobj stimulation,by
R12929 T15916 T15913 prep with,followed
R12930 T15917 T15916 pobj PMA,with
R12931 T15918 T15920 punct (,nM
R12932 T15919 T15920 nummod 162,nM
R12933 T15920 T15929 nmod nM,coli
R12934 T15921 T15920 punct ",",nM
R12935 T15922 T15920 conj A,nM
R12936 T15923 T15922 cc and,A
R12937 T15924 T15922 conj C,A
R12938 T15925 T15924 punct ),C
R12939 T15926 T15922 cc or,A
R12940 T15927 T15929 compound HK,coli
R12941 T15928 T15929 compound E.,coli
R12942 T15929 T15940 meta coli,for
R12943 T15930 T15929 punct (,coli
R12944 T15931 T15929 appos 5,coli
R12945 T15932 T15934 nummod ×,CFU/ml
R12946 T15933 T15934 nummod 107,CFU/ml
R12947 T15934 T15929 appos CFU/ml,coli
R12948 T15935 T15934 punct ",",CFU/ml
R12949 T15936 T15934 conj B,CFU/ml
R12950 T15937 T15936 cc and,B
R12951 T15938 T15936 conj D,B
R12952 T15939 T15929 punct ),coli
R12953 T15940 T15913 prep for,followed
R12954 T15941 T15942 nummod 24,h.
R12955 T15942 T15940 pobj h.,for
R12956 T15943 T15944 punct (,A
R12957 T15944 T15942 appos A,h.
R12958 T15945 T15948 punct ",",NF-κB
R12959 T15946 T15948 nmod B,NF-κB
R12960 T15947 T15948 punct ),NF-κB
R12961 T15948 T15944 appos NF-κB,A
R12962 T15949 T15948 punct ",",NF-κB
R12963 T15950 T15948 cc but,NF-κB
R12964 T15951 T15953 neg not,C
R12965 T15952 T15953 punct (,C
R12966 T15953 T15948 conj C,NF-κB
R12967 T15954 T15953 punct ",",C
R12968 T15955 T15953 conj D,C
R12969 T15956 T15953 punct ),C
R12970 T15957 T15959 nsubjpass AP-1,inhibited
R12971 T15958 T15959 auxpass was,inhibited
R12972 T15959 T15902 conj inhibited,incubated
R12973 T15960 T15959 punct .,inhibited
R12974 T15961 T15962 compound Statistical,significance
R12975 T15962 T15973 nsubjpass significance,determined
R12976 T15963 T15962 prep from,significance
R12977 T15964 T15966 det the,control
R12978 T15965 T15966 amod positive,control
R12979 T15966 T15963 pobj control,from
R12980 T15967 T15966 punct (,control
R12981 T15968 T15970 compound PMA/HK,coli
R12982 T15969 T15970 compound E.,coli
R12983 T15970 T15966 appos coli,control
R12984 T15971 T15966 punct ),control
R12985 T15972 T15973 auxpass was,determined
R12986 T15973 T15973 ROOT determined,determined
R12987 T15974 T15973 advcl using,determined
R12988 T15975 T15977 poss Student,t-test
R12989 T15976 T15975 case 's,Student
R12990 T15977 T15974 dobj t-test,using
R12991 T15978 T15973 punct .,determined
R12992 T15979 T15982 punct (,4
R12993 T15980 T15982 advmod n,4
R12994 T15981 T15982 punct =,4
R12995 T15982 T15987 meta 4,set
R12996 T15983 T15982 punct ),4
R12997 T15984 T15982 punct .,4
R12998 T15985 T15987 nsubjpass Controls,set
R12999 T15986 T15987 auxpass were,set
R13000 T15987 T15987 ROOT set,set
R13001 T15988 T15987 prep to,set
R13002 T15989 T15988 pobj 1,to
R13003 T15990 T15987 punct .,set

GO-BP

Id Subject Object Predicate Lexical cue
T16108 196-212 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T16109 196-222 http://purl.obolibrary.org/obo/GO_1903721 denotes NF-κB activation inhibitor

GO-CC

Id Subject Object Predicate Lexical cue
T16110 56-61 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16111 170-175 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T15871 10-46 Sentence denotes Inhibition of NF-κB activity by NAI.
T15872 47-165 Sentence denotes Jurkat T-cells were transfected with luciferase reporter plasmids containing either NF-κB or AP-1 cis-acting elements.
T15873 166-386 Sentence denotes The cells were incubated with NF-κB activation inhibitor (NAI) for 1 h followed by stimulation with PMA (162 nM, A and C) or HK E. coli (5 × 107 CFU/ml, B and D) for 24 h. (A, B) NF-κB, but not (C, D) AP-1 was inhibited.
T15874 387-502 Sentence denotes Statistical significance from the positive control (PMA/HK E. coli) was determined using Student's t-test. (n = 4).
T15875 503-526 Sentence denotes Controls were set to 1.
T87 0-46 Sentence denotes Figure 4 Inhibition of NF-κB activity by NAI.
T88 47-165 Sentence denotes Jurkat T-cells were transfected with luciferase reporter plasmids containing either NF-κB or AP-1 cis-acting elements.
T89 166-386 Sentence denotes The cells were incubated with NF-κB activation inhibitor (NAI) for 1 h followed by stimulation with PMA (162 nM, A and C) or HK E. coli (5 × 107 CFU/ml, B and D) for 24 h. (A, B) NF-κB, but not (C, D) AP-1 was inhibited.
T90 387-502 Sentence denotes Statistical significance from the positive control (PMA/HK E. coli) was determined using Student's t-test. (n = 4).
T91 503-526 Sentence denotes Controls were set to 1.

events-check-again

Id Subject Object Predicate Lexical cue
T16117 84-94 Protein denotes luciferase

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T16118 24-29 Protein denotes NF-κB
T16119 10-20 Negative_regulation denotes Inhibition
T16120 84-94 Protein denotes luciferase
T16121 131-136 Protein denotes NF-κB
T16122 140-144 Protein denotes AP-1
T16123 196-201 Protein denotes NF-κB
T16124 345-350 Protein denotes NF-κB
T16125 376-385 Negative_regulation denotes inhibited
R13114 T16118 T16119 themeOf NF-κB,Inhibition
R13115 T16124 T16125 themeOf NF-κB,inhibited

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T15870 84-94 Protein denotes luciferase

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16100 84-94 P08659 denotes luciferase
T16101 140-144 P05412 denotes AP-1
T16102 367-371 P05412 denotes AP-1

test2

Id Subject Object Predicate Lexical cue
T15869 84-94 Protein denotes luciferase