PMC:2889865 / 11254-11426 JSONTXT

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    pmc-enju-pas

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T4861","span":{"begin":0,"end":3},"obj":"NNP"},{"id":"T4862","span":{"begin":4,"end":7},"obj":"VBD"},{"id":"T4863","span":{"begin":8,"end":11},"obj":"RB"},{"id":"T4864","span":{"begin":12,"end":18},"obj":"VB"},{"id":"T4865","span":{"begin":19,"end":22},"obj":"NNP"},{"id":"T4866","span":{"begin":23,"end":33},"obj":"NN"},{"id":"T4867","span":{"begin":34,"end":35},"obj":"-LRB-"},{"id":"T4868","span":{"begin":35,"end":41},"obj":"NN"},{"id":"T4869","span":{"begin":42,"end":44},"obj":"NN"},{"id":"T4870","span":{"begin":44,"end":45},"obj":"-RRB-"},{"id":"T4871","span":{"begin":46,"end":56},"obj":"VBG"},{"id":"T4872","span":{"begin":57,"end":61},"obj":"IN"},{"id":"T4873","span":{"begin":62,"end":67},"obj":"NNP"},{"id":"T4874","span":{"begin":68,"end":70},"obj":"VBZ"},{"id":"T4875","span":{"begin":71,"end":74},"obj":"RB"},{"id":"T4876","span":{"begin":75,"end":78},"obj":"DT"},{"id":"T4877","span":{"begin":79,"end":83},"obj":"JJ"},{"id":"T4878","span":{"begin":84,"end":93},"obj":"NN"},{"id":"T4879","span":{"begin":94,"end":96},"obj":"IN"},{"id":"T4880","span":{"begin":97,"end":102},"obj":"CD"},{"id":"T4881","span":{"begin":103,"end":105},"obj":"CC"},{"id":"T4882","span":{"begin":106,"end":109},"obj":"NNP"},{"id":"T4883","span":{"begin":110,"end":119},"obj":"VBG"},{"id":"T4884","span":{"begin":120,"end":126},"obj":"CC"},{"id":"T4885","span":{"begin":127,"end":130},"obj":"NNP"},{"id":"T4886","span":{"begin":131,"end":133},"obj":"CC"},{"id":"T4887","span":{"begin":134,"end":136},"obj":"NNP"},{"id":"T4888","span":{"begin":137,"end":139},"obj":"NNP"},{"id":"T4889","span":{"begin":140,"end":144},"obj":"NNS"},{"id":"T4890","span":{"begin":145,"end":153},"obj":"NN"},{"id":"T4891","span":{"begin":154,"end":156},"obj":"IN"},{"id":"T4892","span":{"begin":157,"end":163},"obj":"NNP"},{"id":"T4893","span":{"begin":164,"end":171},"obj":"NNS"},{"id":"T4894","span":{"begin":171,"end":172},"obj":"."}],"relations":[{"id":"R3910","pred":"nsubj","subj":"T4861","obj":"T4864"},{"id":"R3911","pred":"aux","subj":"T4862","obj":"T4864"},{"id":"R3912","pred":"neg","subj":"T4863","obj":"T4864"},{"id":"R3913","pred":"ROOT","subj":"T4864","obj":"T4864"},{"id":"R3914","pred":"compound","subj":"T4865","obj":"T4866"},{"id":"R3915","pred":"dobj","subj":"T4866","obj":"T4864"},{"id":"R3916","pred":"punct","subj":"T4867","obj":"T4869"},{"id":"R3917","pred":"compound","subj":"T4868","obj":"T4869"},{"id":"R3918","pred":"appos","subj":"T4869","obj":"T4866"},{"id":"R3919","pred":"punct","subj":"T4870","obj":"T4864"},{"id":"R3920","pred":"advcl","subj":"T4871","obj":"T4864"},{"id":"R3921","pred":"mark","subj":"T4872","obj":"T4874"},{"id":"R3922","pred":"nsubj","subj":"T4873","obj":"T4874"},{"id":"R3923","pred":"ccomp","subj":"T4874","obj":"T4871"},{"id":"R3924","pred":"neg","subj":"T4875","obj":"T4874"},{"id":"R3925","pred":"det","subj":"T4876","obj":"T4878"},{"id":"R3926","pred":"amod","subj":"T4877","obj":"T4878"},{"id":"R3927","pred":"attr","subj":"T4878","obj":"T4874"},{"id":"R3928","pred":"prep","subj":"T4879","obj":"T4878"},{"id":"R3929","pred":"pobj","subj":"T4880","obj":"T4879"},{"id":"R3930","pred":"cc","subj":"T4881","obj":"T4880"},{"id":"R3931","pred":"conj","subj":"T4882","obj":"T4880"},{"id":"R3932","pred":"prep","subj":"T4883","obj":"T4878"},{"id":"R3933","pred":"preconj","subj":"T4884","obj":"T4885"},{"id":"R3934","pred":"pobj","subj":"T4885","obj":"T4883"},{"id":"R3935","pred":"cc","subj":"T4886","obj":"T4885"},{"id":"R3936","pred":"compound","subj":"T4887","obj":"T4890"},{"id":"R3937","pred":"compound","subj":"T4888","obj":"T4889"},{"id":"R3938","pred":"compound","subj":"T4889","obj":"T4890"},{"id":"R3939","pred":"conj","subj":"T4890","obj":"T4885"},{"id":"R3940","pred":"prep","subj":"T4891","obj":"T4890"},{"id":"R3941","pred":"compound","subj":"T4892","obj":"T4893"},{"id":"R3942","pred":"pobj","subj":"T4893","obj":"T4891"},{"id":"R3943","pred":"punct","subj":"T4894","obj":"T4864"}],"text":"NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T5586","span":{"begin":166,"end":171},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells."}

    sentences

    {"project":"sentences","denotations":[{"id":"T4757","span":{"begin":0,"end":172},"obj":"Sentence"},{"id":"T85","span":{"begin":0,"end":172},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T5826","span":{"begin":84,"end":93},"obj":"Regulation"},{"id":"T5827","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T5828","span":{"begin":110,"end":119},"obj":"Positive_regulation"}],"relations":[{"id":"R4724","pred":"themeOf","subj":"T5827","obj":"T5828"},{"id":"R4725","pred":"themeOf","subj":"T5828","obj":"T5826"}],"attributes":[{"id":"M99","pred":"Negation","subj":"T5826","obj":"true"}],"text":"NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T5885","span":{"begin":19,"end":22},"obj":"Protein"},{"id":"T5886","span":{"begin":62,"end":67},"obj":"Protein"},{"id":"T5887","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T5888","span":{"begin":106,"end":109},"obj":"Protein"},{"id":"T5889","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T5890","span":{"begin":84,"end":93},"obj":"Regulation"},{"id":"T5891","span":{"begin":12,"end":18},"obj":"Regulation"}],"relations":[{"id":"R4760","pred":"themeOf","subj":"T5885","obj":"T5889"},{"id":"R4761","pred":"themeOf","subj":"T5886","obj":"T5890"},{"id":"R4762","pred":"themeOf","subj":"T5889","obj":"T5891"}],"text":"NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T4708","span":{"begin":84,"end":93},"obj":"Regulation"},{"id":"T4709","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T4710","span":{"begin":110,"end":119},"obj":"Positive_regulation"}],"relations":[{"id":"R3785","pred":"themeOf","subj":"T4709","obj":"T4710"},{"id":"R3786","pred":"themeOf","subj":"T4710","obj":"T4708"}],"attributes":[{"id":"M79","pred":"Negation","subj":"T4708","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T5515","span":{"begin":19,"end":22},"obj":"P01375"},{"id":"T5516","span":{"begin":97,"end":102},"obj":"P10145"},{"id":"T5517","span":{"begin":106,"end":109},"obj":"P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells."}

    test2

    {"project":"test2","denotations":[{"id":"T4665","span":{"begin":12,"end":18},"obj":"Regulation"},{"id":"T4666","span":{"begin":23,"end":33},"obj":"Gene_expression"},{"id":"T4667","span":{"begin":84,"end":93},"obj":"Regulation"},{"id":"T4668","span":{"begin":97,"end":102},"obj":"Protein"},{"id":"T4669","span":{"begin":110,"end":119},"obj":"Positive_regulation"}],"relations":[{"id":"R3755","pred":"themeOf","subj":"T4666","obj":"T4665"},{"id":"R3756","pred":"themeOf","subj":"T4668","obj":"T4669"},{"id":"R3757","pred":"themeOf","subj":"T4669","obj":"T4667"}],"attributes":[{"id":"M76","pred":"Speculation","subj":"T4668","obj":"true"}],"text":"NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells."}