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PMC:2889865 / 11254-11426 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5236 0-3 NN denotes NAI
T5237 4-7 VB denotes did
T5238 8-11 RB denotes not
T5239 12-18 VB denotes affect
T5240 19-22 NN denotes TNF
T5241 23-33 NN denotes expression
T5242 34-35 -LRB- denotes (
T5243 35-41 NN denotes figure
T5244 42-44 NN denotes 5b
T5245 44-45 -RRB- denotes )
T5246 46-56 VB denotes indicating
T5247 57-61 IN denotes that
T5248 62-67 NN denotes NF-κB
T5249 68-70 VB denotes is
T5250 71-74 RB denotes not
T5251 75-78 DT denotes the
T5252 79-83 JJ denotes main
T5253 84-93 NN denotes regulator
T5254 94-96 IN denotes of
T5255 97-102 NN denotes CXCL8
T5256 103-105 CC denotes or
T5257 106-109 NN denotes TNF
T5258 110-119 VB denotes following
T5259 120-126 CC denotes either
T5260 127-130 NN denotes PMA
T5261 131-133 CC denotes or
T5262 134-136 NN denotes HK
T5263 137-139 FW denotes E.
T5264 140-144 FW denotes coli
T5265 145-153 NN denotes exposure
T5266 154-156 IN denotes in
T5267 157-163 NN denotes Jurkat
T5268 164-171 NN denotes T-cells
R4285 T5236 T5237 arg1Of NAI,did
R4286 T5236 T5239 arg1Of NAI,affect
R4287 T5239 T5237 arg2Of affect,did
R4288 T5239 T5238 arg1Of affect,not
R4289 T5239 T5246 modOf affect,indicating
R4290 T5241 T5239 arg2Of expression,affect
R4291 T5241 T5240 arg1Of expression,TNF
R4292 T5241 T5242 arg1Of expression,(
R4293 T5244 T5242 arg2Of 5b,(
R4294 T5244 T5243 arg1Of 5b,figure
R4295 T5245 T5242 arg3Of ),(
R4296 T5248 T5249 arg1Of NF-κB,is
R4297 T5249 T5246 arg2Of is,indicating
R4298 T5249 T5247 arg1Of is,that
R4299 T5249 T5250 arg1Of is,not
R4300 T5253 T5249 arg2Of regulator,is
R4301 T5253 T5251 arg1Of regulator,the
R4302 T5253 T5252 arg1Of regulator,main
R4303 T5253 T5254 arg1Of regulator,of
R4304 T5253 T5258 arg1Of regulator,following
R4305 T5255 T5256 arg1Of CXCL8,or
R4306 T5256 T5254 arg2Of or,of
R4307 T5257 T5256 arg2Of TNF,or
R4308 T5260 T5261 arg1Of PMA,or
R4309 T5261 T5258 arg2Of or,following
R4310 T5261 T5259 arg1Of or,either
R4311 T5261 T5266 arg1Of or,in
R4312 T5265 T5261 arg2Of exposure,or
R4313 T5265 T5262 arg1Of exposure,HK
R4314 T5265 T5263 arg1Of exposure,E.
R4315 T5265 T5264 arg1Of exposure,coli
R4316 T5268 T5266 arg2Of T-cells,in
R4317 T5268 T5267 arg1Of T-cells,Jurkat

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4861 0-3 NNP denotes NAI
T4862 4-7 VBD denotes did
T4863 8-11 RB denotes not
T4864 12-18 VB denotes affect
T4865 19-22 NNP denotes TNF
T4866 23-33 NN denotes expression
T4867 34-35 -LRB- denotes (
T4868 35-41 NN denotes figure
T4869 42-44 NN denotes 5b
T4870 44-45 -RRB- denotes )
T4871 46-56 VBG denotes indicating
T4872 57-61 IN denotes that
T4873 62-67 NNP denotes NF-κB
T4874 68-70 VBZ denotes is
T4875 71-74 RB denotes not
T4876 75-78 DT denotes the
T4877 79-83 JJ denotes main
T4878 84-93 NN denotes regulator
T4879 94-96 IN denotes of
T4880 97-102 CD denotes CXCL8
T4881 103-105 CC denotes or
T4882 106-109 NNP denotes TNF
T4883 110-119 VBG denotes following
T4884 120-126 CC denotes either
T4885 127-130 NNP denotes PMA
T4886 131-133 CC denotes or
T4887 134-136 NNP denotes HK
T4888 137-139 NNP denotes E.
T4889 140-144 NNS denotes coli
T4890 145-153 NN denotes exposure
T4891 154-156 IN denotes in
T4892 157-163 NNP denotes Jurkat
T4893 164-171 NNS denotes T-cells
T4894 171-172 . denotes .
R3910 T4861 T4864 nsubj NAI,affect
R3911 T4862 T4864 aux did,affect
R3912 T4863 T4864 neg not,affect
R3913 T4864 T4864 ROOT affect,affect
R3914 T4865 T4866 compound TNF,expression
R3915 T4866 T4864 dobj expression,affect
R3916 T4867 T4869 punct (,5b
R3917 T4868 T4869 compound figure,5b
R3918 T4869 T4866 appos 5b,expression
R3919 T4870 T4864 punct ),affect
R3920 T4871 T4864 advcl indicating,affect
R3921 T4872 T4874 mark that,is
R3922 T4873 T4874 nsubj NF-κB,is
R3923 T4874 T4871 ccomp is,indicating
R3924 T4875 T4874 neg not,is
R3925 T4876 T4878 det the,regulator
R3926 T4877 T4878 amod main,regulator
R3927 T4878 T4874 attr regulator,is
R3928 T4879 T4878 prep of,regulator
R3929 T4880 T4879 pobj CXCL8,of
R3930 T4881 T4880 cc or,CXCL8
R3931 T4882 T4880 conj TNF,CXCL8
R3932 T4883 T4878 prep following,regulator
R3933 T4884 T4885 preconj either,PMA
R3934 T4885 T4883 pobj PMA,following
R3935 T4886 T4885 cc or,PMA
R3936 T4887 T4890 compound HK,exposure
R3937 T4888 T4889 compound E.,coli
R3938 T4889 T4890 compound coli,exposure
R3939 T4890 T4885 conj exposure,PMA
R3940 T4891 T4890 prep in,exposure
R3941 T4892 T4893 compound Jurkat,T-cells
R3942 T4893 T4891 pobj T-cells,in
R3943 T4894 T4864 punct .,affect

GO-CC

Id Subject Object Predicate Lexical cue
T5586 166-171 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T4757 0-172 Sentence denotes NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells.
T85 0-172 Sentence denotes NAI did not affect TNF expression (figure 5b) indicating that NF-κB is not the main regulator of CXCL8 or TNF following either PMA or HK E. coli exposure in Jurkat T-cells.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T5826 84-93 Regulation denotes regulator true
T5827 97-102 Protein denotes CXCL8
T5828 110-119 Positive_regulation denotes following
R4724 T5827 T5828 themeOf CXCL8,following
R4725 T5828 T5826 themeOf following,regulator

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5885 19-22 Protein denotes TNF
T5886 62-67 Protein denotes NF-κB
T5887 97-102 Protein denotes CXCL8
T5888 106-109 Protein denotes TNF
T5889 23-33 Gene_expression denotes expression
T5890 84-93 Regulation denotes regulator
T5891 12-18 Regulation denotes affect
R4760 T5885 T5889 themeOf TNF,expression
R4761 T5886 T5890 themeOf NF-κB,regulator
R4762 T5889 T5891 themeOf expression,affect

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T4708 84-93 Regulation denotes regulator true
T4709 97-102 Protein denotes CXCL8
T4710 110-119 Positive_regulation denotes following
R3785 T4709 T4710 themeOf CXCL8,following
R3786 T4710 T4708 themeOf following,regulator

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5515 19-22 P01375 denotes TNF
T5516 97-102 P10145 denotes CXCL8
T5517 106-109 P01375 denotes TNF

test2

Id Subject Object Predicate Lexical cue Speculation
T4665 12-18 Regulation denotes affect
T4666 23-33 Gene_expression denotes expression
T4667 84-93 Regulation denotes regulator
T4668 97-102 Protein denotes CXCL8 true
T4669 110-119 Positive_regulation denotes following
R3755 T4666 T4665 themeOf expression,affect
R3756 T4668 T4669 themeOf CXCL8,following
R3757 T4669 T4667 themeOf following,regulator