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PMC:2806624 / 55947-56220 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T26846 0-8 JJ denotes Specific
T26847 9-16 NNS denotes primers
T26848 17-20 IN denotes for
T26849 21-24 DT denotes the
T26850 25-30 CD denotes FOXP3
T26851 31-39 NN denotes promoter
T26852 39-40 , denotes ,
T26853 41-49 VBG denotes spanning
T26854 50-53 DT denotes the
T26855 54-60 NN denotes region
T26856 61-65 IN denotes from
T26857 66-67 CD denotes −
T26858 67-69 CD denotes 87
T26859 70-72 TO denotes to
T26860 73-74 CD denotes −
T26861 74-75 CD denotes 3
T26862 75-76 , denotes ,
T26863 77-82 CD denotes FOXP3
T26864 83-91 NN denotes promoter
T26865 92-99 RB denotes forward
T26866 100-106 JJR denotes primer
T26867 107-108 CD denotes 5
T26868 108-109 SYM denotes ′
T26869 109-110 : denotes -
T26870 110-130 NN denotes AGAGGTCTGCGGCTTCCA-3
T26871 130-131 NN denotes ′
T26872 131-132 , denotes ,
T26873 133-138 CD denotes FOXP3
T26874 139-147 NN denotes promoter
T26875 148-155 NN denotes reverse
T26876 156-162 NN denotes primer
T26877 163-164 CD denotes 5
T26878 164-165 SYM denotes ′
T26879 165-166 : denotes -
T26880 166-193 NN denotes GGAAACTGTCACGTATCAAAAACAA-3
T26881 193-194 NN denotes ′
T26882 194-195 , denotes ,
T26883 196-198 CC denotes or
T26884 199-206 NN denotes control
T26885 207-212 NNP denotes GAPDH
T26886 213-219 NN denotes primer
T26887 220-221 -LRB- denotes (
T26888 221-223 NNP denotes SA
T26889 224-235 NNPS denotes Biosciences
T26890 235-236 -RRB- denotes )
T26891 237-240 IN denotes for
T26892 241-244 DT denotes the
T26893 245-248 NNP denotes RNA
T26894 249-259 NN denotes polymerase
T26895 260-262 NNP denotes II
T26896 263-267 VBD denotes were
T26897 268-272 VBN denotes used
T26898 272-273 . denotes .
R20996 T26846 T26847 amod Specific,primers
R20997 T26847 T26897 nsubjpass primers,used
R20998 T26848 T26847 prep for,primers
R20999 T26849 T26851 det the,promoter
R21000 T26850 T26851 nummod FOXP3,promoter
R21001 T26851 T26848 pobj promoter,for
R21002 T26852 T26897 punct ",",used
R21003 T26853 T26897 advcl spanning,used
R21004 T26854 T26855 det the,region
R21005 T26855 T26853 dobj region,spanning
R21006 T26856 T26853 prep from,spanning
R21007 T26857 T26856 pobj −,from
R21008 T26858 T26866 meta 87,primer
R21009 T26859 T26866 cc to,primer
R21010 T26860 T26866 dep −,primer
R21011 T26861 T26860 appos 3,−
R21012 T26862 T26866 punct ",",primer
R21013 T26863 T26864 nummod FOXP3,promoter
R21014 T26864 T26866 npadvmod promoter,primer
R21015 T26865 T26866 advmod forward,primer
R21016 T26866 T26897 advcl primer,used
R21017 T26867 T26871 nummod 5,′
R21018 T26868 T26870 punct ′,AGAGGTCTGCGGCTTCCA-3
R21019 T26869 T26870 punct -,AGAGGTCTGCGGCTTCCA-3
R21020 T26870 T26871 compound AGAGGTCTGCGGCTTCCA-3,′
R21021 T26871 T26866 appos ′,primer
R21022 T26872 T26871 punct ",",′
R21023 T26873 T26876 nummod FOXP3,primer
R21024 T26874 T26876 compound promoter,primer
R21025 T26875 T26876 compound reverse,primer
R21026 T26876 T26897 nsubjpass primer,used
R21027 T26877 T26881 nummod 5,′
R21028 T26878 T26880 punct ′,GGAAACTGTCACGTATCAAAAACAA-3
R21029 T26879 T26880 punct -,GGAAACTGTCACGTATCAAAAACAA-3
R21030 T26880 T26881 compound GGAAACTGTCACGTATCAAAAACAA-3,′
R21031 T26881 T26876 appos ′,primer
R21032 T26882 T26881 punct ",",′
R21033 T26883 T26881 cc or,′
R21034 T26884 T26881 conj control,′
R21035 T26885 T26886 compound GAPDH,primer
R21036 T26886 T26897 nsubjpass primer,used
R21037 T26887 T26889 punct (,Biosciences
R21038 T26888 T26889 compound SA,Biosciences
R21039 T26889 T26886 appos Biosciences,primer
R21040 T26890 T26886 punct ),primer
R21041 T26891 T26886 prep for,primer
R21042 T26892 T26895 det the,II
R21043 T26893 T26894 compound RNA,polymerase
R21044 T26894 T26895 compound polymerase,II
R21045 T26895 T26891 pobj II,for
R21046 T26896 T26897 auxpass were,used
R21047 T26897 T26897 ROOT used,used
R21048 T26898 T26897 punct .,used

GO-BP

Id Subject Object Predicate Lexical cue
T26952 245-262 http://purl.obolibrary.org/obo/GO_1990114 denotes RNA polymerase II
T26973 245-262 http://purl.obolibrary.org/obo/GO_0001055 denotes RNA polymerase II
T26975 245-262 http://purl.obolibrary.org/obo/GO_0003899 denotes RNA polymerase II

GO-MF

Id Subject Object Predicate Lexical cue
T26984 245-262 http://purl.obolibrary.org/obo/GO_0001055 denotes RNA polymerase II
T26986 245-262 http://purl.obolibrary.org/obo/GO_0003899 denotes RNA polymerase II

GO-CC

Id Subject Object Predicate Lexical cue
T27002 245-262 http://purl.obolibrary.org/obo/GO_0005665 denotes RNA polymerase II

sentences

Id Subject Object Predicate Lexical cue
T26534 0-273 Sentence denotes Specific primers for the FOXP3 promoter, spanning the region from −87 to −3, FOXP3 promoter forward primer 5′-AGAGGTCTGCGGCTTCCA-3′, FOXP3 promoter reverse primer 5′-GGAAACTGTCACGTATCAAAAACAA-3′, or control GAPDH primer (SA Biosciences) for the RNA polymerase II were used.
T384 0-273 Sentence denotes Specific primers for the FOXP3 promoter, spanning the region from −87 to −3, FOXP3 promoter forward primer 5′-AGAGGTCTGCGGCTTCCA-3′, FOXP3 promoter reverse primer 5′-GGAAACTGTCACGTATCAAAAACAA-3′, or control GAPDH primer (SA Biosciences) for the RNA polymerase II were used.

events-check-again

Id Subject Object Predicate Lexical cue
T27053 25-30 Protein denotes FOXP3
T27054 77-82 Protein denotes FOXP3
T27055 133-138 Protein denotes FOXP3
T27056 207-212 Protein denotes GAPDH
T27057 245-262 Protein denotes RNA polymerase II

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T27015 25-39 Protein denotes FOXP3 promoter
T27016 133-147 Protein denotes FOXP3 promoter
T27017 207-212 Protein denotes GAPDH
T27018 245-262 Protein denotes RNA polymerase II

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T26520 25-30 Protein denotes FOXP3
T26521 77-82 Protein denotes FOXP3
T26522 133-138 Protein denotes FOXP3
T26523 207-212 Protein denotes GAPDH
T26524 245-262 Protein denotes RNA polymerase II

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T26546 25-30 Q9BZS1 denotes FOXP3
T26547 77-82 Q9BZS1 denotes FOXP3
T26548 133-138 Q9BZS1 denotes FOXP3
T26549 207-212 P04406 denotes GAPDH

test2

Id Subject Object Predicate Lexical cue
T26501 25-30 Protein denotes FOXP3
T26502 77-82 Protein denotes FOXP3
T26503 133-138 Protein denotes FOXP3
T26504 207-212 Protein denotes GAPDH
T26505 245-262 Protein denotes RNA polymerase II