PMC:2806624 / 54561-54788 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T26564","span":{"begin":0,"end":5},"obj":"JJ"},{"id":"T26565","span":{"begin":6,"end":11},"obj":"JJ"},{"id":"T26566","span":{"begin":12,"end":15},"obj":"NNP"},{"id":"T26567","span":{"begin":15,"end":16},"obj":"CD"},{"id":"T26568","span":{"begin":17,"end":18},"obj":"NNP"},{"id":"T26569","span":{"begin":19,"end":24},"obj":"NNS"},{"id":"T26570","span":{"begin":25,"end":29},"obj":"VBD"},{"id":"T26571","span":{"begin":30,"end":38},"obj":"VBN"},{"id":"T26572","span":{"begin":39,"end":45},"obj":"RB"},{"id":"T26573","span":{"begin":46,"end":50},"obj":"IN"},{"id":"T26574","span":{"begin":51,"end":55},"obj":"NN"},{"id":"T26575","span":{"begin":56,"end":60},"obj":"RB"},{"id":"T26576","span":{"begin":61,"end":63},"obj":"CC"},{"id":"T26577","span":{"begin":64,"end":68},"obj":"IN"},{"id":"T26578","span":{"begin":69,"end":73},"obj":"NN"},{"id":"T26579","span":{"begin":73,"end":74},"obj":","},{"id":"T26580","span":{"begin":75,"end":83},"obj":"JJ"},{"id":"T26581","span":{"begin":83,"end":84},"obj":"NN"},{"id":"T26582","span":{"begin":84,"end":88},"obj":"CD"},{"id":"T26583","span":{"begin":88,"end":89},"obj":","},{"id":"T26584","span":{"begin":90,"end":93},"obj":"CC"},{"id":"T26585","span":{"begin":94,"end":99},"obj":"NNP"},{"id":"T26586","span":{"begin":100,"end":103},"obj":"IN"},{"id":"T26587","span":{"begin":104,"end":106},"obj":"CD"},{"id":"T26588","span":{"begin":107,"end":108},"obj":"NN"},{"id":"T26589","span":{"begin":108,"end":109},"obj":","},{"id":"T26590","span":{"begin":110,"end":113},"obj":"CC"},{"id":"T26591","span":{"begin":114,"end":121},"obj":"NN"},{"id":"T26592","span":{"begin":122,"end":125},"obj":"NNP"},{"id":"T26593","span":{"begin":126,"end":135},"obj":"NNS"},{"id":"T26594","span":{"begin":136,"end":140},"obj":"VBD"},{"id":"T26595","span":{"begin":141,"end":146},"obj":"VBN"},{"id":"T26596","span":{"begin":147,"end":149},"obj":"IN"},{"id":"T26597","span":{"begin":150,"end":163},"obj":"JJ"},{"id":"T26598","span":{"begin":164,"end":168},"obj":"IN"},{"id":"T26599","span":{"begin":169,"end":181},"obj":"NN"},{"id":"T26600","span":{"begin":182,"end":184},"obj":"IN"},{"id":"T26601","span":{"begin":185,"end":186},"obj":"DT"},{"id":"T26602","span":{"begin":187,"end":192},"obj":"JJ"},{"id":"T26603","span":{"begin":193,"end":206},"obj":"NN"},{"id":"T26604","span":{"begin":207,"end":209},"obj":"IN"},{"id":"T26605","span":{"begin":210,"end":214},"obj":"CD"},{"id":"T26606","span":{"begin":214,"end":215},"obj":"NN"},{"id":"T26607","span":{"begin":216,"end":219},"obj":"IN"},{"id":"T26608","span":{"begin":220,"end":222},"obj":"CD"},{"id":"T26609","span":{"begin":223,"end":226},"obj":"NN"},{"id":"T26610","span":{"begin":226,"end":227},"obj":"."}],"relations":[{"id":"R20714","pred":"amod","subj":"T26564","obj":"T26569"},{"id":"R20715","pred":"amod","subj":"T26565","obj":"T26569"},{"id":"R20716","pred":"compound","subj":"T26566","obj":"T26569"},{"id":"R20717","pred":"nummod","subj":"T26567","obj":"T26569"},{"id":"R20718","pred":"compound","subj":"T26568","obj":"T26569"},{"id":"R20719","pred":"nsubjpass","subj":"T26569","obj":"T26571"},{"id":"R20720","pred":"auxpass","subj":"T26570","obj":"T26571"},{"id":"R20721","pred":"ROOT","subj":"T26571","obj":"T26571"},{"id":"R20722","pred":"advmod","subj":"T26572","obj":"T26571"},{"id":"R20723","pred":"prep","subj":"T26573","obj":"T26571"},{"id":"R20724","pred":"pobj","subj":"T26574","obj":"T26573"},{"id":"R20725","pred":"advmod","subj":"T26575","obj":"T26576"},{"id":"R20726","pred":"cc","subj":"T26576","obj":"T26573"},{"id":"R20727","pred":"conj","subj":"T26577","obj":"T26573"},{"id":"R20728","pred":"pobj","subj":"T26578","obj":"T26577"},{"id":"R20729","pred":"punct","subj":"T26579","obj":"T26578"},{"id":"R20730","pred":"appos","subj":"T26580","obj":"T26578"},{"id":"R20731","pred":"appos","subj":"T26581","obj":"T26578"},{"id":"R20732","pred":"nummod","subj":"T26582","obj":"T26581"},{"id":"R20733","pred":"punct","subj":"T26583","obj":"T26581"},{"id":"R20734","pred":"cc","subj":"T26584","obj":"T26578"},{"id":"R20735","pred":"conj","subj":"T26585","obj":"T26578"},{"id":"R20736","pred":"prep","subj":"T26586","obj":"T26585"},{"id":"R20737","pred":"nummod","subj":"T26587","obj":"T26588"},{"id":"R20738","pred":"pobj","subj":"T26588","obj":"T26586"},{"id":"R20739","pred":"punct","subj":"T26589","obj":"T26585"},{"id":"R20740","pred":"cc","subj":"T26590","obj":"T26585"},{"id":"R20741","pred":"conj","subj":"T26591","obj":"T26585"},{"id":"R20742","pred":"compound","subj":"T26592","obj":"T26593"},{"id":"R20743","pred":"nsubjpass","subj":"T26593","obj":"T26595"},{"id":"R20744","pred":"auxpass","subj":"T26594","obj":"T26595"},{"id":"R20745","pred":"advcl","subj":"T26595","obj":"T26571"},{"id":"R20746","pred":"agent","subj":"T26596","obj":"T26595"},{"id":"R20747","pred":"pobj","subj":"T26597","obj":"T26596"},{"id":"R20748","pred":"prep","subj":"T26598","obj":"T26597"},{"id":"R20749","pred":"pobj","subj":"T26599","obj":"T26598"},{"id":"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naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T26978","span":{"begin":51,"end":55},"obj":"http://purl.obolibrary.org/obo/GO_0005134"},{"id":"T26979","span":{"begin":69,"end":73},"obj":"http://purl.obolibrary.org/obo/GO_0005134"}],"text":"Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T26989","span":{"begin":19,"end":24},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T26991","span":{"begin":114,"end":135},"obj":"http://purl.obolibrary.org/obo/GO_0001114"},{"id":"T26992","span":{"begin":114,"end":135},"obj":"http://purl.obolibrary.org/obo/GO_0032993"},{"id":"T26993","span":{"begin":114,"end":135},"obj":"http://purl.obolibrary.org/obo/GO_0097522"}],"text":"Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min."}

    sentences

    {"project":"sentences","denotations":[{"id":"T26526","span":{"begin":0,"end":227},"obj":"Sentence"},{"id":"T376","span":{"begin":0,"end":227},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T27039","span":{"begin":12,"end":15},"obj":"Protein"},{"id":"T27040","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T27041","span":{"begin":69,"end":73},"obj":"Protein"},{"id":"T27042","span":{"begin":80,"end":83},"obj":"Protein"},{"id":"T27043","span":{"begin":84,"end":85},"obj":"Protein"},{"id":"T27044","span":{"begin":86,"end":88},"obj":"Protein"},{"id":"T27045","span":{"begin":94,"end":99},"obj":"Protein"}],"text":"Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T27003","span":{"begin":12,"end":16},"obj":"Protein"},{"id":"T27004","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T27005","span":{"begin":69,"end":73},"obj":"Protein"},{"id":"T27006","span":{"begin":94,"end":99},"obj":"Protein"}],"text":"Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T26506","span":{"begin":12,"end":15},"obj":"Protein"},{"id":"T26507","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T26508","span":{"begin":69,"end":73},"obj":"Protein"},{"id":"T26509","span":{"begin":80,"end":83},"obj":"Protein"},{"id":"T26510","span":{"begin":84,"end":85},"obj":"Protein"},{"id":"T26511","span":{"begin":86,"end":88},"obj":"Protein"},{"id":"T26512","span":{"begin":94,"end":99},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T26537","span":{"begin":12,"end":15},"obj":"P01730"},{"id":"T26538","span":{"begin":51,"end":55},"obj":"P60568"},{"id":"T26539","span":{"begin":69,"end":73},"obj":"P60568"},{"id":"T26540","span":{"begin":80,"end":83},"obj":"P06729"},{"id":"T26541","span":{"begin":94,"end":99},"obj":"P01137"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min."}

    test2

    {"project":"test2","denotations":[{"id":"T26486","span":{"begin":12,"end":15},"obj":"Protein"},{"id":"T26487","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T26488","span":{"begin":69,"end":73},"obj":"Protein"},{"id":"T26489","span":{"begin":80,"end":83},"obj":"Protein"},{"id":"T26490","span":{"begin":84,"end":85},"obj":"Protein"},{"id":"T26491","span":{"begin":86,"end":88},"obj":"Protein"},{"id":"T26492","span":{"begin":94,"end":99},"obj":"Protein"}],"text":"Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min."}