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PMC:2806624 / 54561-54788 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T26564 0-5 JJ denotes Human
T26565 6-11 JJ denotes naive
T26566 12-15 NNP denotes CD4
T26567 15-16 CD denotes +
T26568 17-18 NNP denotes T
T26569 19-24 NNS denotes cells
T26570 25-29 VBD denotes were
T26571 30-38 VBN denotes cultured
T26572 39-45 RB denotes either
T26573 46-50 IN denotes with
T26574 51-55 NN denotes IL-2
T26575 56-60 RB denotes only
T26576 61-63 CC denotes or
T26577 64-68 IN denotes with
T26578 69-73 NN denotes IL-2
T26579 73-74 , denotes ,
T26580 75-83 JJ denotes anti-CD2
T26581 83-84 NN denotes /
T26582 84-88 CD denotes 3/28
T26583 88-89 , denotes ,
T26584 90-93 CC denotes and
T26585 94-99 NNP denotes TGF-β
T26586 100-103 IN denotes for
T26587 104-106 CD denotes 72
T26588 107-108 NN denotes h
T26589 108-109 , denotes ,
T26590 110-113 CC denotes and
T26591 114-121 NN denotes protein
T26592 122-125 NNP denotes DNA
T26593 126-135 NNS denotes complexes
T26594 136-140 VBD denotes were
T26595 141-146 VBN denotes fixed
T26596 147-149 IN denotes by
T26597 150-163 JJ denotes cross-linking
T26598 164-168 IN denotes with
T26599 169-181 NN denotes formaldehyde
T26600 182-184 IN denotes in
T26601 185-186 DT denotes a
T26602 187-192 JJ denotes final
T26603 193-206 NN denotes concentration
T26604 207-209 IN denotes of
T26605 210-214 CD denotes 1.42
T26606 214-215 NN denotes %
T26607 216-219 IN denotes for
T26608 220-222 CD denotes 15
T26609 223-226 NN denotes min
T26610 226-227 . denotes .
R20714 T26564 T26569 amod Human,cells
R20715 T26565 T26569 amod naive,cells
R20716 T26566 T26569 compound CD4,cells
R20717 T26567 T26569 nummod +,cells
R20718 T26568 T26569 compound T,cells
R20719 T26569 T26571 nsubjpass cells,cultured
R20720 T26570 T26571 auxpass were,cultured
R20721 T26571 T26571 ROOT cultured,cultured
R20722 T26572 T26571 advmod either,cultured
R20723 T26573 T26571 prep with,cultured
R20724 T26574 T26573 pobj IL-2,with
R20725 T26575 T26576 advmod only,or
R20726 T26576 T26573 cc or,with
R20727 T26577 T26573 conj with,with
R20728 T26578 T26577 pobj IL-2,with
R20729 T26579 T26578 punct ",",IL-2
R20730 T26580 T26578 appos anti-CD2,IL-2
R20731 T26581 T26578 appos /,IL-2
R20732 T26582 T26581 nummod 3/28,/
R20733 T26583 T26581 punct ",",/
R20734 T26584 T26578 cc and,IL-2
R20735 T26585 T26578 conj TGF-β,IL-2
R20736 T26586 T26585 prep for,TGF-β
R20737 T26587 T26588 nummod 72,h
R20738 T26588 T26586 pobj h,for
R20739 T26589 T26585 punct ",",TGF-β
R20740 T26590 T26585 cc and,TGF-β
R20741 T26591 T26585 conj protein,TGF-β
R20742 T26592 T26593 compound DNA,complexes
R20743 T26593 T26595 nsubjpass complexes,fixed
R20744 T26594 T26595 auxpass were,fixed
R20745 T26595 T26571 advcl fixed,cultured
R20746 T26596 T26595 agent by,fixed
R20747 T26597 T26596 pobj cross-linking,by
R20748 T26598 T26597 prep with,cross-linking
R20749 T26599 T26598 pobj formaldehyde,with
R20750 T26600 T26595 prep in,fixed
R20751 T26601 T26603 det a,concentration
R20752 T26602 T26603 amod final,concentration
R20753 T26603 T26600 pobj concentration,in
R20754 T26604 T26603 prep of,concentration
R20755 T26605 T26606 nummod 1.42,%
R20756 T26606 T26604 pobj %,of
R20757 T26607 T26606 prep for,%
R20758 T26608 T26609 nummod 15,min
R20759 T26609 T26607 pobj min,for
R20760 T26610 T26571 punct .,cultured

GO-MF

Id Subject Object Predicate Lexical cue
T26978 51-55 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2
T26979 69-73 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2

GO-CC

Id Subject Object Predicate Lexical cue
T26989 19-24 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T26991 114-135 http://purl.obolibrary.org/obo/GO_0001114 denotes protein–DNA complexes
T26992 114-135 http://purl.obolibrary.org/obo/GO_0032993 denotes protein–DNA complexes
T26993 114-135 http://purl.obolibrary.org/obo/GO_0097522 denotes protein–DNA complexes

sentences

Id Subject Object Predicate Lexical cue
T26526 0-227 Sentence denotes Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min.
T376 0-227 Sentence denotes Human naive CD4+ T cells were cultured either with IL-2 only or with IL-2, anti-CD2/3/28, and TGF-β for 72 h, and protein–DNA complexes were fixed by cross-linking with formaldehyde in a final concentration of 1.42% for 15 min.

events-check-again

Id Subject Object Predicate Lexical cue
T27039 12-15 Protein denotes CD4
T27040 51-55 Protein denotes IL-2
T27041 69-73 Protein denotes IL-2
T27042 80-83 Protein denotes CD2
T27043 84-85 Protein denotes 3
T27044 86-88 Protein denotes 28
T27045 94-99 Protein denotes TGF-β

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T27003 12-16 Protein denotes CD4+
T27004 51-55 Protein denotes IL-2
T27005 69-73 Protein denotes IL-2
T27006 94-99 Protein denotes TGF-β

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T26506 12-15 Protein denotes CD4
T26507 51-55 Protein denotes IL-2
T26508 69-73 Protein denotes IL-2
T26509 80-83 Protein denotes CD2
T26510 84-85 Protein denotes 3
T26511 86-88 Protein denotes 28
T26512 94-99 Protein denotes TGF-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T26537 12-15 P01730 denotes CD4
T26538 51-55 P60568 denotes IL-2
T26539 69-73 P60568 denotes IL-2
T26540 80-83 P06729 denotes CD2
T26541 94-99 P01137 denotes TGF-β

test2

Id Subject Object Predicate Lexical cue
T26486 12-15 Protein denotes CD4
T26487 51-55 Protein denotes IL-2
T26488 69-73 Protein denotes IL-2
T26489 80-83 Protein denotes CD2
T26490 84-85 Protein denotes 3
T26491 86-88 Protein denotes 28
T26492 94-99 Protein denotes TGF-β