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PMC:2806624 / 47131-47950 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T23299 0-3 NN denotes RNA
T23300 4-16 NN denotes interference
T23301 18-22 JJ denotes CD4+
T23302 23-25 CC denotes or
T23303 26-31 JJ denotes naive
T23304 32-36 JJ denotes CD4+
T23305 37-38 NN denotes T
T23306 39-44 NN denotes cells
T23307 45-49 VB denotes were
T23308 50-61 VB denotes resuspended
T23309 62-64 IN denotes in
T23310 65-68 CD denotes 100
T23311 69-71 NN denotes µl
T23312 72-74 IN denotes of
T23313 75-87 NN denotes Nucleofector
T23314 88-96 NN denotes solution
T23315 97-98 -LRB- denotes (
T23316 98-103 NN denotes Lonza
T23317 103-104 -RRB- denotes )
T23318 105-108 CC denotes and
T23319 109-123 VB denotes electroporated
T23320 124-128 IN denotes with
T23321 129-130 CD denotes 2
T23322 131-133 NN denotes µM
T23323 134-139 NN denotes siRNA
T23324 140-145 VB denotes using
T23325 146-149 DT denotes the
T23326 150-162 NN denotes Nucleofector
T23327 163-173 NN denotes technology
T23328 174-181 NN denotes program
T23329 182-186 NN denotes U-14
T23330 187-188 -LRB- denotes (
T23331 188-193 NN denotes Lonza
T23332 193-194 -RRB- denotes )
T23333 196-200 CD denotes Five
T23334 201-210 JJ denotes different
T23335 211-219 NN denotes Silencer
T23336 220-222 CC denotes or
T23337 223-231 NNP denotes Silencer
T23338 232-238 NNP denotes Select
T23339 239-251 JJ denotes Pre-designed
T23340 252-258 NN denotes siRNAs
T23341 259-262 IN denotes for
T23342 263-268 NN denotes RUNX1
T23343 269-270 -LRB- denotes (
T23344 270-277 NNP denotes Applied
T23345 278-288 NNP denotes Biosystems
T23346 288-289 -RRB- denotes )
T23347 290-293 CC denotes and
T23348 294-299 CD denotes three
T23349 300-308 NN denotes Silencer
T23350 309-321 JJ denotes Pre-designed
T23351 322-328 NN denotes siRNAs
T23352 329-332 IN denotes for
T23353 333-338 NN denotes RUNX3
T23354 339-340 -LRB- denotes (
T23355 340-347 NNP denotes Applied
T23356 348-358 NNP denotes Biosystems
T23357 358-359 -RRB- denotes )
T23358 360-364 VB denotes were
T23359 365-371 VB denotes tested
T23360 371-372 -COMMA- denotes ,
T23361 373-376 CC denotes and
T23362 377-380 DT denotes the
T23363 381-385 JJ denotes best
T23364 386-389 VB denotes was
T23365 390-398 VB denotes selected
T23366 399-402 IN denotes for
T23367 403-406 DT denotes all
T23368 407-414 JJ denotes further
T23369 415-426 NN denotes experiments
T23370 428-431 DT denotes The
T23371 432-440 NNP denotes Silencer
T23372 441-449 JJ denotes Negative
T23373 450-457 NNP denotes Control
T23374 458-459 -SHARP- denotes #
T23375 459-460 CD denotes 1
T23376 461-466 NN denotes siRNA
T23377 467-468 -LRB- denotes (
T23378 468-475 NNP denotes Applied
T23379 476-486 NNP denotes Biosystems
T23380 486-487 -RRB- denotes )
T23381 488-491 VB denotes was
T23382 492-496 VB denotes used
T23383 497-500 IN denotes for
T23384 501-514 NN denotes normalization
T23385 516-521 NN denotes Cells
T23386 522-526 VB denotes were
T23387 527-531 RB denotes then
T23388 532-536 VB denotes left
T23389 537-549 JJ denotes unstimulated
T23390 550-552 CC denotes or
T23391 553-557 VB denotes were
T23392 558-568 VB denotes stimulated
T23393 569-574 IN denotes after
T23394 575-577 CD denotes 12
T23395 578-579 NN denotes h
T23396 580-584 IN denotes with
T23397 585-593 NN denotes anti-CD2
T23398 593-594 -COMMA- denotes ,
T23399 595-603 NN denotes anti-CD3
T23400 603-604 -COMMA- denotes ,
T23401 605-608 CC denotes and
T23402 609-618 NN denotes anti-CD28
T23403 620-625 NN denotes Cells
T23404 626-630 VB denotes were
T23405 631-639 VB denotes cultured
T23406 640-642 IN denotes in
T23407 643-653 JJ denotes serum-free
T23408 654-659 NN denotes AIM-V
T23409 660-666 NN denotes medium
T23410 667-671 IN denotes with
T23411 672-675 DT denotes the
T23412 676-684 NN denotes addition
T23413 685-687 IN denotes of
T23414 688-689 CD denotes 1
T23415 690-696 NN denotes nmol/l
T23416 697-701 NN denotes IL-2
T23417 702-703 -LRB- denotes (
T23418 703-708 NN denotes Roche
T23419 708-709 -RRB- denotes )
T23420 711-716 NN denotes Cells
T23421 717-721 VB denotes were
T23422 722-731 VB denotes harvested
T23423 732-735 IN denotes for
T23424 736-740 NN denotes mRNA
T23425 741-750 NN denotes detection
T23426 751-753 IN denotes of
T23427 754-757 DT denotes the
T23428 758-764 NN denotes target
T23429 765-770 NN denotes genes
T23430 771-776 IN denotes after
T23431 777-779 CD denotes 24
T23432 780-781 NN denotes h
T23433 782-785 CC denotes and
T23434 786-789 IN denotes for
T23435 790-797 NN denotes protein
T23436 798-807 NN denotes detection
T23437 808-813 IN denotes after
T23438 814-816 CD denotes 48
T23439 817-818 NN denotes h
R18006 T23300 T23299 arg1Of interference,RNA
R18007 T23301 T23302 arg1Of CD4+,or
R18008 T23303 T23302 arg2Of naive,or
R18009 T23306 T23301 arg1Of cells,CD4+
R18010 T23306 T23303 arg1Of cells,naive
R18011 T23306 T23304 arg1Of cells,CD4+
R18012 T23306 T23305 arg1Of cells,T
R18013 T23306 T23307 arg1Of cells,were
R18014 T23306 T23308 arg2Of cells,resuspended
R18015 T23306 T23319 arg2Of cells,electroporated
R18016 T23308 T23309 arg1Of resuspended,in
R18017 T23308 T23318 arg1Of resuspended,and
R18018 T23311 T23309 arg2Of µl,in
R18019 T23311 T23310 arg1Of µl,100
R18020 T23311 T23312 arg1Of µl,of
R18021 T23314 T23312 arg2Of solution,of
R18022 T23314 T23313 arg1Of solution,Nucleofector
R18023 T23314 T23315 arg1Of solution,(
R18024 T23316 T23315 arg2Of Lonza,(
R18025 T23317 T23315 arg3Of ),(
R18026 T23318 T23307 arg2Of and,were
R18027 T23319 T23318 arg2Of electroporated,and
R18028 T23319 T23320 arg1Of electroporated,with
R18029 T23323 T23320 arg2Of siRNA,with
R18030 T23323 T23321 arg1Of siRNA,2
R18031 T23323 T23322 arg1Of siRNA,µM
R18032 T23323 T23324 arg1Of siRNA,using
R18033 T23329 T23324 arg2Of U-14,using
R18034 T23329 T23325 arg1Of U-14,the
R18035 T23329 T23326 arg1Of U-14,Nucleofector
R18036 T23329 T23327 arg1Of U-14,technology
R18037 T23329 T23328 arg1Of U-14,program
R18038 T23329 T23330 arg1Of U-14,(
R18039 T23331 T23330 arg2Of Lonza,(
R18040 T23332 T23330 arg3Of ),(
R18041 T23335 T23333 arg1Of Silencer,Five
R18042 T23335 T23334 arg1Of Silencer,different
R18043 T23335 T23336 arg1Of Silencer,or
R18044 T23336 T23341 arg1Of or,for
R18045 T23336 T23358 arg1Of or,were
R18046 T23336 T23359 arg2Of or,tested
R18047 T23338 T23337 arg1Of Select,Silencer
R18048 T23340 T23336 arg2Of siRNAs,or
R18049 T23340 T23338 arg1Of siRNAs,Select
R18050 T23340 T23339 arg1Of siRNAs,Pre-designed
R18051 T23342 T23343 arg1Of RUNX1,(
R18052 T23342 T23347 arg1Of RUNX1,and
R18053 T23345 T23343 arg2Of Biosystems,(
R18054 T23345 T23344 arg1Of Biosystems,Applied
R18055 T23346 T23343 arg3Of ),(
R18056 T23347 T23341 arg2Of and,for
R18057 T23351 T23347 arg2Of siRNAs,and
R18058 T23351 T23348 arg1Of siRNAs,three
R18059 T23351 T23349 arg1Of siRNAs,Silencer
R18060 T23351 T23350 arg1Of siRNAs,Pre-designed
R18061 T23351 T23352 arg1Of siRNAs,for
R18062 T23353 T23352 arg2Of RUNX3,for
R18063 T23353 T23354 arg1Of RUNX3,(
R18064 T23356 T23354 arg2Of Biosystems,(
R18065 T23356 T23355 arg1Of Biosystems,Applied
R18066 T23357 T23354 arg3Of ),(
R18067 T23359 T23358 arg2Of tested,were
R18068 T23359 T23361 arg1Of tested,and
R18069 T23361 T23360 arg1Of and,","
R18070 T23363 T23362 arg1Of best,the
R18071 T23363 T23364 arg1Of best,was
R18072 T23363 T23365 arg2Of best,selected
R18073 T23365 T23361 arg2Of selected,and
R18074 T23365 T23364 arg2Of selected,was
R18075 T23365 T23366 arg1Of selected,for
R18076 T23369 T23366 arg2Of experiments,for
R18077 T23369 T23367 arg1Of experiments,all
R18078 T23369 T23368 arg1Of experiments,further
R18079 T23372 T23371 arg1Of Negative,Silencer
R18080 T23376 T23370 arg1Of siRNA,The
R18081 T23376 T23372 arg1Of siRNA,Negative
R18082 T23376 T23373 arg1Of siRNA,Control
R18083 T23376 T23374 arg1Of siRNA,#
R18084 T23376 T23375 arg1Of siRNA,1
R18085 T23376 T23377 arg1Of siRNA,(
R18086 T23376 T23381 arg1Of siRNA,was
R18087 T23376 T23382 arg2Of siRNA,used
R18088 T23379 T23377 arg2Of Biosystems,(
R18089 T23379 T23378 arg1Of Biosystems,Applied
R18090 T23380 T23377 arg3Of ),(
R18091 T23382 T23381 arg2Of used,was
R18092 T23382 T23383 arg1Of used,for
R18093 T23384 T23383 arg2Of normalization,for
R18094 T23385 T23386 arg1Of Cells,were
R18095 T23385 T23388 arg2Of Cells,left
R18096 T23385 T23391 arg1Of Cells,were
R18097 T23385 T23392 arg2Of Cells,stimulated
R18098 T23388 T23386 arg2Of left,were
R18099 T23388 T23387 arg1Of left,then
R18100 T23388 T23390 arg1Of left,or
R18101 T23389 T23388 arg3Of unstimulated,left
R18102 T23392 T23390 arg2Of stimulated,or
R18103 T23392 T23391 arg2Of stimulated,were
R18104 T23392 T23393 arg1Of stimulated,after
R18105 T23395 T23393 arg2Of h,after
R18106 T23395 T23394 arg1Of h,12
R18107 T23395 T23396 arg1Of h,with
R18108 T23397 T23398 arg1Of anti-CD2,","
R18109 T23398 T23401 arg1Of ",",and
R18110 T23399 T23398 arg2Of anti-CD3,","
R18111 T23401 T23396 arg2Of and,with
R18112 T23401 T23400 arg1Of and,","
R18113 T23402 T23401 arg2Of anti-CD28,and
R18114 T23403 T23404 arg1Of Cells,were
R18115 T23403 T23405 arg2Of Cells,cultured
R18116 T23405 T23404 arg2Of cultured,were
R18117 T23405 T23406 arg1Of cultured,in
R18118 T23409 T23406 arg2Of medium,in
R18119 T23409 T23407 arg1Of medium,serum-free
R18120 T23409 T23408 arg1Of medium,AIM-V
R18121 T23409 T23410 arg1Of medium,with
R18122 T23412 T23410 arg2Of addition,with
R18123 T23412 T23411 arg1Of addition,the
R18124 T23412 T23413 arg1Of addition,of
R18125 T23416 T23413 arg2Of IL-2,of
R18126 T23416 T23414 arg1Of IL-2,1
R18127 T23416 T23415 arg1Of IL-2,nmol/l
R18128 T23416 T23417 arg1Of IL-2,(
R18129 T23418 T23417 arg2Of Roche,(
R18130 T23419 T23417 arg3Of ),(
R18131 T23420 T23421 arg1Of Cells,were
R18132 T23420 T23422 arg2Of Cells,harvested
R18133 T23422 T23421 arg2Of harvested,were
R18134 T23422 T23423 arg1Of harvested,for
R18135 T23422 T23430 arg1Of harvested,after
R18136 T23422 T23434 arg1Of harvested,for
R18137 T23422 T23437 arg1Of harvested,after
R18138 T23425 T23423 arg2Of detection,for
R18139 T23425 T23424 arg1Of detection,mRNA
R18140 T23425 T23426 arg1Of detection,of
R18141 T23429 T23426 arg2Of genes,of
R18142 T23429 T23427 arg1Of genes,the
R18143 T23429 T23428 arg1Of genes,target
R18144 T23430 T23433 arg1Of after,and
R18145 T23432 T23430 arg2Of h,after
R18146 T23432 T23431 arg1Of h,24
R18147 T23434 T23433 arg2Of for,and
R18148 T23436 T23434 arg2Of detection,for
R18149 T23436 T23435 arg1Of detection,protein
R18150 T23439 T23437 arg2Of h,after
R18151 T23439 T23438 arg1Of h,48

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23459 0-3 NNP denotes RNA
T23460 4-16 NN denotes interference
T23461 16-17 . denotes .
T23462 18-21 CD denotes CD4
T23463 21-22 NN denotes +
T23464 23-25 CC denotes or
T23465 26-31 JJ denotes naive
T23466 32-35 NNP denotes CD4
T23467 35-36 CD denotes +
T23468 37-38 NNP denotes T
T23469 39-44 NNS denotes cells
T23470 45-49 VBD denotes were
T23471 50-61 VBN denotes resuspended
T23472 62-64 IN denotes in
T23473 65-68 CD denotes 100
T23474 69-71 NN denotes µl
T23475 72-74 IN denotes of
T23476 75-87 NNP denotes Nucleofector
T23477 88-96 NN denotes solution
T23478 97-98 -LRB- denotes (
T23479 98-103 NNP denotes Lonza
T23480 103-104 -RRB- denotes )
T23481 105-108 CC denotes and
T23482 109-123 VBD denotes electroporated
T23483 124-128 IN denotes with
T23484 129-130 CD denotes 2
T23485 131-133 NNP denotes µM
T23486 134-139 NNP denotes siRNA
T23487 140-145 VBG denotes using
T23488 146-149 DT denotes the
T23489 150-162 NNP denotes Nucleofector
T23490 163-173 NN denotes technology
T23491 174-181 NN denotes program
T23492 182-186 NN denotes U-14
T23493 187-188 -LRB- denotes (
T23494 188-193 NNP denotes Lonza
T23495 193-194 -RRB- denotes )
T23496 194-195 . denotes .
T23497 196-200 CD denotes Five
T23498 201-210 JJ denotes different
T23499 211-219 NN denotes Silencer
T23500 220-222 CC denotes or
T23501 223-231 NNP denotes Silencer
T23502 232-238 NNP denotes Select
T23503 239-251 JJ denotes Pre-designed
T23504 252-258 NNS denotes siRNAs
T23505 259-262 IN denotes for
T23506 263-268 NNP denotes RUNX1
T23507 269-270 -LRB- denotes (
T23508 270-277 NNP denotes Applied
T23509 278-288 NNPS denotes Biosystems
T23510 288-289 -RRB- denotes )
T23511 290-293 CC denotes and
T23512 294-299 CD denotes three
T23513 300-308 NNP denotes Silencer
T23514 309-321 JJ denotes Pre-designed
T23515 322-328 NNS denotes siRNAs
T23516 329-332 IN denotes for
T23517 333-338 NNP denotes RUNX3
T23518 339-340 -LRB- denotes (
T23519 340-347 NNP denotes Applied
T23520 348-358 NNPS denotes Biosystems
T23521 358-359 -RRB- denotes )
T23522 360-364 VBD denotes were
T23523 365-371 VBN denotes tested
T23524 371-372 , denotes ,
T23525 373-376 CC denotes and
T23526 377-380 DT denotes the
T23527 381-385 JJS denotes best
T23528 386-389 VBD denotes was
T23529 390-398 VBN denotes selected
T23530 399-402 IN denotes for
T23531 403-406 DT denotes all
T23532 407-414 JJ denotes further
T23533 415-426 NNS denotes experiments
T23534 426-427 . denotes .
T23535 428-431 DT denotes The
T23536 432-440 NNP denotes Silencer
T23537 441-449 JJ denotes Negative
T23538 450-457 NNP denotes Control
T23539 458-459 # denotes #
T23540 459-460 CD denotes 1
T23541 461-466 NNP denotes siRNA
T23542 467-468 -LRB- denotes (
T23543 468-475 NNP denotes Applied
T23544 476-486 NNPS denotes Biosystems
T23545 486-487 -RRB- denotes )
T23546 488-491 VBD denotes was
T23547 492-496 VBN denotes used
T23548 497-500 IN denotes for
T23549 501-514 NN denotes normalization
T23550 514-515 . denotes .
T23551 516-521 NNS denotes Cells
T23552 522-526 VBD denotes were
T23553 527-531 RB denotes then
T23554 532-536 VBN denotes left
T23555 537-549 JJ denotes unstimulated
T23556 550-552 CC denotes or
T23557 553-557 VBD denotes were
T23558 558-568 VBN denotes stimulated
T23559 569-574 IN denotes after
T23560 575-577 CD denotes 12
T23561 578-579 NN denotes h
T23562 580-584 IN denotes with
T23563 585-593 JJ denotes anti-CD2
T23564 593-594 , denotes ,
T23565 595-603 JJ denotes anti-CD3
T23566 603-604 , denotes ,
T23567 605-608 CC denotes and
T23568 609-618 JJ denotes anti-CD28
T23569 618-619 . denotes .
T23570 620-625 NNS denotes Cells
T23571 626-630 VBD denotes were
T23572 631-639 VBN denotes cultured
T23573 640-642 IN denotes in
T23574 643-653 JJ denotes serum-free
T23575 654-659 NNP denotes AIM-V
T23576 660-666 NN denotes medium
T23577 667-671 IN denotes with
T23578 672-675 DT denotes the
T23579 676-684 NN denotes addition
T23580 685-687 IN denotes of
T23581 688-689 CD denotes 1
T23582 690-696 NN denotes nmol/l
T23583 697-701 NN denotes IL-2
T23584 702-703 -LRB- denotes (
T23585 703-708 NNP denotes Roche
T23586 708-709 -RRB- denotes )
T23587 709-710 . denotes .
T23588 711-716 NNS denotes Cells
T23589 717-721 VBD denotes were
T23590 722-731 VBN denotes harvested
T23591 732-735 IN denotes for
T23592 736-740 NNP denotes mRNA
T23593 741-750 NN denotes detection
T23594 751-753 IN denotes of
T23595 754-757 DT denotes the
T23596 758-764 NN denotes target
T23597 765-770 NNS denotes genes
T23598 771-776 IN denotes after
T23599 777-779 CD denotes 24
T23600 780-781 NN denotes h
T23601 782-785 CC denotes and
T23602 786-789 IN denotes for
T23603 790-797 NN denotes protein
T23604 798-807 NN denotes detection
T23605 808-813 IN denotes after
T23606 814-816 CD denotes 48
T23607 817-819 NN denotes h.
R18152 T23459 T23460 compound RNA,interference
R18153 T23460 T23460 ROOT interference,interference
R18154 T23461 T23460 punct .,interference
R18155 T23462 T23469 nummod CD4,cells
R18156 T23463 T23469 nmod +,cells
R18157 T23464 T23463 cc or,+
R18158 T23465 T23463 conj naive,+
R18159 T23466 T23469 compound CD4,cells
R18160 T23467 T23469 nummod +,cells
R18161 T23468 T23469 compound T,cells
R18162 T23469 T23471 nsubjpass cells,resuspended
R18163 T23470 T23471 auxpass were,resuspended
R18164 T23471 T23471 ROOT resuspended,resuspended
R18165 T23472 T23471 prep in,resuspended
R18166 T23473 T23474 nummod 100,µl
R18167 T23474 T23472 pobj µl,in
R18168 T23475 T23474 prep of,µl
R18169 T23476 T23477 compound Nucleofector,solution
R18170 T23477 T23475 pobj solution,of
R18171 T23478 T23479 punct (,Lonza
R18172 T23479 T23477 appos Lonza,solution
R18173 T23480 T23479 punct ),Lonza
R18174 T23481 T23471 cc and,resuspended
R18175 T23482 T23471 conj electroporated,resuspended
R18176 T23483 T23482 prep with,electroporated
R18177 T23484 T23486 nummod 2,siRNA
R18178 T23485 T23486 compound µM,siRNA
R18179 T23486 T23487 nsubj siRNA,using
R18180 T23487 T23483 pcomp using,with
R18181 T23488 T23491 det the,program
R18182 T23489 T23491 nmod Nucleofector,program
R18183 T23490 T23491 compound technology,program
R18184 T23491 T23492 compound program,U-14
R18185 T23492 T23487 dobj U-14,using
R18186 T23493 T23492 punct (,U-14
R18187 T23494 T23492 appos Lonza,U-14
R18188 T23495 T23492 punct ),U-14
R18189 T23496 T23471 punct .,resuspended
R18190 T23497 T23499 nummod Five,Silencer
R18191 T23498 T23499 amod different,Silencer
R18192 T23499 T23523 nsubjpass Silencer,tested
R18193 T23500 T23499 cc or,Silencer
R18194 T23501 T23499 conj Silencer,Silencer
R18195 T23502 T23504 compound Select,siRNAs
R18196 T23503 T23504 compound Pre-designed,siRNAs
R18197 T23504 T23499 appos siRNAs,Silencer
R18198 T23505 T23504 prep for,siRNAs
R18199 T23506 T23505 pobj RUNX1,for
R18200 T23507 T23509 punct (,Biosystems
R18201 T23508 T23509 compound Applied,Biosystems
R18202 T23509 T23523 nsubjpass Biosystems,tested
R18203 T23510 T23509 punct ),Biosystems
R18204 T23511 T23509 cc and,Biosystems
R18205 T23512 T23515 nummod three,siRNAs
R18206 T23513 T23515 compound Silencer,siRNAs
R18207 T23514 T23515 compound Pre-designed,siRNAs
R18208 T23515 T23509 conj siRNAs,Biosystems
R18209 T23516 T23515 prep for,siRNAs
R18210 T23517 T23516 pobj RUNX3,for
R18211 T23518 T23520 punct (,Biosystems
R18212 T23519 T23520 compound Applied,Biosystems
R18213 T23520 T23517 appos Biosystems,RUNX3
R18214 T23521 T23517 punct ),RUNX3
R18215 T23522 T23523 auxpass were,tested
R18216 T23523 T23523 ROOT tested,tested
R18217 T23524 T23523 punct ",",tested
R18218 T23525 T23523 cc and,tested
R18219 T23526 T23527 det the,best
R18220 T23527 T23529 nsubjpass best,selected
R18221 T23528 T23529 auxpass was,selected
R18222 T23529 T23523 conj selected,tested
R18223 T23530 T23529 prep for,selected
R18224 T23531 T23533 det all,experiments
R18225 T23532 T23533 amod further,experiments
R18226 T23533 T23530 pobj experiments,for
R18227 T23534 T23529 punct .,selected
R18228 T23535 T23538 det The,Control
R18229 T23536 T23538 compound Silencer,Control
R18230 T23537 T23538 compound Negative,Control
R18231 T23538 T23547 nsubjpass Control,used
R18232 T23539 T23547 nsubjpass #,used
R18233 T23540 T23541 nummod 1,siRNA
R18234 T23541 T23547 nsubjpass siRNA,used
R18235 T23542 T23544 punct (,Biosystems
R18236 T23543 T23544 compound Applied,Biosystems
R18237 T23544 T23541 parataxis Biosystems,siRNA
R18238 T23545 T23544 punct ),Biosystems
R18239 T23546 T23547 auxpass was,used
R18240 T23547 T23547 ROOT used,used
R18241 T23548 T23547 prep for,used
R18242 T23549 T23548 pobj normalization,for
R18243 T23550 T23547 punct .,used
R18244 T23551 T23554 nsubjpass Cells,left
R18245 T23552 T23554 auxpass were,left
R18246 T23553 T23554 advmod then,left
R18247 T23554 T23554 ROOT left,left
R18248 T23555 T23554 oprd unstimulated,left
R18249 T23556 T23554 cc or,left
R18250 T23557 T23558 auxpass were,stimulated
R18251 T23558 T23554 conj stimulated,left
R18252 T23559 T23558 prep after,stimulated
R18253 T23560 T23561 nummod 12,h
R18254 T23561 T23559 pobj h,after
R18255 T23562 T23561 prep with,h
R18256 T23563 T23562 pobj anti-CD2,with
R18257 T23564 T23563 punct ",",anti-CD2
R18258 T23565 T23563 conj anti-CD3,anti-CD2
R18259 T23566 T23565 punct ",",anti-CD3
R18260 T23567 T23565 cc and,anti-CD3
R18261 T23568 T23565 conj anti-CD28,anti-CD3
R18262 T23569 T23554 punct .,left
R18263 T23570 T23572 nsubjpass Cells,cultured
R18264 T23571 T23572 auxpass were,cultured
R18265 T23572 T23572 ROOT cultured,cultured
R18266 T23573 T23572 prep in,cultured
R18267 T23574 T23576 amod serum-free,medium
R18268 T23575 T23576 compound AIM-V,medium
R18269 T23576 T23573 pobj medium,in
R18270 T23577 T23572 prep with,cultured
R18271 T23578 T23579 det the,addition
R18272 T23579 T23577 pobj addition,with
R18273 T23580 T23579 prep of,addition
R18274 T23581 T23582 nummod 1,nmol/l
R18275 T23582 T23583 compound nmol/l,IL-2
R18276 T23583 T23580 pobj IL-2,of
R18277 T23584 T23585 punct (,Roche
R18278 T23585 T23583 appos Roche,IL-2
R18279 T23586 T23583 punct ),IL-2
R18280 T23587 T23572 punct .,cultured
R18281 T23588 T23590 nsubjpass Cells,harvested
R18282 T23589 T23590 auxpass were,harvested
R18283 T23590 T23590 ROOT harvested,harvested
R18284 T23591 T23590 prep for,harvested
R18285 T23592 T23593 compound mRNA,detection
R18286 T23593 T23591 pobj detection,for
R18287 T23594 T23593 prep of,detection
R18288 T23595 T23597 det the,genes
R18289 T23596 T23597 compound target,genes
R18290 T23597 T23594 pobj genes,of
R18291 T23598 T23590 prep after,harvested
R18292 T23599 T23600 nummod 24,h
R18293 T23600 T23598 pobj h,after
R18294 T23601 T23598 cc and,after
R18295 T23602 T23598 conj for,after
R18296 T23603 T23604 compound protein,detection
R18297 T23604 T23602 pobj detection,for
R18298 T23605 T23590 prep after,harvested
R18299 T23606 T23607 nummod 48,h.
R18300 T23607 T23605 pobj h.,after

UBERON-AE

Id Subject Object Predicate Lexical cue
T23280 643-648 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T23619 0-16 http://purl.obolibrary.org/obo/GO_0016246 denotes RNA interference

GO-MF

Id Subject Object Predicate Lexical cue
T23620 697-701 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2

GO-CC

Id Subject Object Predicate Lexical cue
T23621 39-44 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T23292 0-17 Sentence denotes RNA interference.
T23293 18-195 Sentence denotes CD4+ or naive CD4+ T cells were resuspended in 100 µl of Nucleofector solution (Lonza) and electroporated with 2 µM siRNA using the Nucleofector technology program U-14 (Lonza).
T23294 196-427 Sentence denotes Five different Silencer or Silencer Select Pre-designed siRNAs for RUNX1 (Applied Biosystems) and three Silencer Pre-designed siRNAs for RUNX3 (Applied Biosystems) were tested, and the best was selected for all further experiments.
T23295 428-515 Sentence denotes The Silencer Negative Control #1 siRNA (Applied Biosystems) was used for normalization.
T23296 516-619 Sentence denotes Cells were then left unstimulated or were stimulated after 12 h with anti-CD2, anti-CD3, and anti-CD28.
T23297 620-710 Sentence denotes Cells were cultured in serum-free AIM-V medium with the addition of 1 nmol/l IL-2 (Roche).
T23298 711-819 Sentence denotes Cells were harvested for mRNA detection of the target genes after 24 h and for protein detection after 48 h.
T322 0-17 Sentence denotes RNA interference.
T323 18-195 Sentence denotes CD4+ or naive CD4+ T cells were resuspended in 100 µl of Nucleofector solution (Lonza) and electroporated with 2 µM siRNA using the Nucleofector technology program U-14 (Lonza).
T324 196-427 Sentence denotes Five different Silencer or Silencer Select Pre-designed siRNAs for RUNX1 (Applied Biosystems) and three Silencer Pre-designed siRNAs for RUNX3 (Applied Biosystems) were tested, and the best was selected for all further experiments.
T325 428-515 Sentence denotes The Silencer Negative Control #1 siRNA (Applied Biosystems) was used for normalization.
T326 516-619 Sentence denotes Cells were then left unstimulated or were stimulated after 12 h with anti-CD2, anti-CD3, and anti-CD28.
T327 620-710 Sentence denotes Cells were cultured in serum-free AIM-V medium with the addition of 1 nmol/l IL-2 (Roche).
T328 711-819 Sentence denotes Cells were harvested for mRNA detection of the target genes after 24 h and for protein detection after 48 h.

events-check-again

Id Subject Object Predicate Lexical cue
T23650 590-593 Protein denotes CD2
T23651 600-603 Protein denotes CD3
T23652 614-618 Protein denotes CD28
T23653 654-659 Protein denotes AIM-V
T23654 697-701 Protein denotes IL-2
T23644 18-21 Protein denotes CD4
T23645 32-35 Protein denotes CD4
T23646 252-258 Negative_regulation denotes siRNAs
T23647 263-268 Protein denotes RUNX1
T23648 322-328 Negative_regulation denotes siRNAs
T23649 333-338 Protein denotes RUNX3
R18308 T23647 T23646 themeOf RUNX1,siRNAs
R18309 T23649 T23648 themeOf RUNX3,siRNAs

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T23622 18-22 Protein denotes CD4+
T23623 32-36 Protein denotes CD4+
T23624 129-139 Protein denotes 2 µM siRNA
T23625 263-268 Protein denotes RUNX1
T23626 333-338 Protein denotes RUNX3
T23627 252-258 Negative_regulation denotes siRNAs
T23628 322-328 Negative_regulation denotes siRNAs
T23629 322-328 Negative_regulation denotes siRNAs
T23630 590-593 Protein denotes CD2
T23631 600-603 Protein denotes CD3
T23632 609-618 Protein denotes anti-CD28
R18303 T23625 T23627 themeOf RUNX1,siRNAs
R18304 T23625 T23628 themeOf RUNX1,siRNAs
R18305 T23626 T23629 themeOf RUNX3,siRNAs

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T23281 18-21 Protein denotes CD4
T23282 32-35 Protein denotes CD4
T23283 252-258 Negative_regulation denotes siRNAs
T23284 263-268 Protein denotes RUNX1
T23285 322-328 Negative_regulation denotes siRNAs
T23286 333-338 Protein denotes RUNX3
T23287 590-593 Protein denotes CD2
T23288 600-603 Protein denotes CD3
T23289 614-618 Protein denotes CD28
T23290 654-659 Protein denotes AIM-V
T23291 697-701 Protein denotes IL-2
R18004 T23284 T23283 themeOf RUNX1,siRNAs
R18005 T23286 T23285 themeOf RUNX3,siRNAs

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T23440 18-21 P01730 denotes CD4
T23441 32-35 P01730 denotes CD4
T23442 263-268 Q01196 denotes RUNX1
T23443 333-338 Q13761 denotes RUNX3
T23444 590-593 P06729 denotes CD2
T23445 600-603 P20963 denotes CD3
T23446 600-603 P07766 denotes CD3
T23447 600-603 P09693 denotes CD3
T23448 600-603 P04234 denotes CD3
T23449 614-618 P10747 denotes CD28
T23450 654-657 P26358 denotes AIM
T23451 697-701 P60568 denotes IL-2

test2

Id Subject Object Predicate Lexical cue
T23269 18-21 Protein denotes CD4
T23270 32-35 Protein denotes CD4
T23271 252-258 Negative_regulation denotes siRNAs
T23272 263-268 Protein denotes RUNX1
T23273 322-328 Negative_regulation denotes siRNAs
T23274 333-338 Protein denotes RUNX3
T23275 590-593 Protein denotes CD2
T23276 600-603 Protein denotes CD3
T23277 614-618 Protein denotes CD28
T23278 654-659 Protein denotes AIM-V
T23279 697-701 Protein denotes IL-2
R18002 T23272 T23271 themeOf RUNX1,siRNAs
R18003 T23274 T23273 themeOf RUNX3,siRNAs