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PMC:2806624 / 25224-25519 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T32367 0-3 CD denotes One
T32368 4-6 IN denotes of
T32369 7-12 CD denotes three
T32370 13-24 NN denotes experiments
T32371 25-27 VB denotes is
T32372 28-34 NN denotes shown.
T32373 35-36 -LRB- denotes (
T32374 36-37 NN denotes D
T32375 37-38 -RRB- denotes )
T32376 39-44 JJ denotes Human
T32377 45-50 JJ denotes naive
T32378 51-55 JJ denotes CD4+
T32379 56-57 NN denotes T
T32380 58-63 NN denotes cells
T32381 63-64 -COMMA- denotes ,
T32382 65-76 VB denotes transfected
T32383 77-81 IN denotes with
T32384 82-87 NN denotes RUNX1
T32385 88-91 CC denotes and
T32386 92-97 NN denotes RUNX3
T32387 98-103 NN denotes siRNA
T32388 104-107 CC denotes and
T32389 108-116 VB denotes cultured
T32390 117-122 IN denotes under
T32391 123-125 PRP denotes iT
T32392 126-129 NN denotes reg
T32393 130-145 VB denotes differentiating
T32394 146-156 NN denotes conditions
T32395 157-161 VB denotes were
T32396 162-166 VB denotes used
T32397 167-169 IN denotes in
T32398 170-172 DT denotes an
T32399 173-175 FW denotes in
T32400 176-181 FW denotes vitro
T32401 182-193 NN denotes suppression
T32402 194-199 NN denotes assay
T32403 199-200 -COMMA- denotes ,
T32404 201-209 VB denotes cultured
T32405 210-218 RB denotes together
T32406 219-223 IN denotes with
T32407 224-234 JJ denotes autologous
T32408 235-247 JJ denotes CFSE-labeled
T32409 248-252 JJ denotes CD4+
T32410 253-254 NN denotes T
T32411 255-260 NN denotes cells
T32412 260-261 -COMMA- denotes ,
T32413 262-265 CC denotes and
T32414 266-276 VB denotes stimulated
T32415 277-281 IN denotes with
T32416 282-290 JJ denotes anti-CD3
T32417 291-294 NN denotes mAb
R24760 T32367 T32368 arg1Of One,of
R24761 T32367 T32371 arg1Of One,is
R24762 T32370 T32368 arg2Of experiments,of
R24763 T32370 T32369 arg1Of experiments,three
R24764 T32374 T32373 arg2Of D,(
R24765 T32375 T32373 arg3Of ),(
R24766 T32376 T32372 arg1Of Human,shown.
R24767 T32376 T32373 arg1Of Human,(
R24768 T32380 T32376 arg1Of cells,Human
R24769 T32380 T32377 arg1Of cells,naive
R24770 T32380 T32378 arg1Of cells,CD4+
R24771 T32380 T32379 arg1Of cells,T
R24772 T32380 T32381 arg1Of cells,","
R24773 T32380 T32382 arg2Of cells,transfected
R24774 T32380 T32389 arg2Of cells,cultured
R24775 T32380 T32395 arg1Of cells,were
R24776 T32380 T32396 arg2Of cells,used
R24777 T32380 T32414 arg2Of cells,stimulated
R24778 T32382 T32383 arg1Of transfected,with
R24779 T32382 T32388 arg1Of transfected,and
R24780 T32384 T32385 arg1Of RUNX1,and
R24781 T32385 T32383 arg2Of and,with
R24782 T32387 T32385 arg2Of siRNA,and
R24783 T32387 T32386 arg1Of siRNA,RUNX3
R24784 T32389 T32388 arg2Of cultured,and
R24785 T32389 T32390 arg1Of cultured,under
R24786 T32394 T32390 arg2Of conditions,under
R24787 T32394 T32391 arg1Of conditions,iT
R24788 T32394 T32392 arg1Of conditions,reg
R24789 T32394 T32393 arg1Of conditions,differentiating
R24790 T32396 T32397 arg1Of used,in
R24791 T32396 T32413 arg1Of used,and
R24792 T32400 T32399 arg1Of vitro,in
R24793 T32402 T32397 arg2Of assay,in
R24794 T32402 T32398 arg1Of assay,an
R24795 T32402 T32400 arg1Of assay,vitro
R24796 T32402 T32401 arg1Of assay,suppression
R24797 T32402 T32403 arg1Of assay,","
R24798 T32402 T32404 arg2Of assay,cultured
R24799 T32404 T32405 arg1Of cultured,together
R24800 T32404 T32406 arg1Of cultured,with
R24801 T32411 T32406 arg2Of cells,with
R24802 T32411 T32407 arg1Of cells,autologous
R24803 T32411 T32408 arg1Of cells,CFSE-labeled
R24804 T32411 T32409 arg1Of cells,CD4+
R24805 T32411 T32410 arg1Of cells,T
R24806 T32413 T32371 arg2Of and,is
R24807 T32413 T32395 arg2Of and,were
R24808 T32413 T32412 arg1Of and,","
R24809 T32414 T32413 arg2Of stimulated,and
R24810 T32414 T32415 arg1Of stimulated,with
R24811 T32417 T32415 arg2Of mAb,with
R24812 T32417 T32416 arg1Of mAb,anti-CD3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T32742 0-3 CD denotes One
T32743 4-6 IN denotes of
T32744 7-12 CD denotes three
T32745 13-24 NNS denotes experiments
T32746 25-27 VBZ denotes is
T32747 28-33 VBN denotes shown
T32748 33-34 . denotes .
T32749 35-36 -LRB- denotes (
T32750 36-37 NNP denotes D
T32751 37-38 -RRB- denotes )
T32752 39-44 NNP denotes Human
T32753 45-50 JJ denotes naive
T32754 51-54 NNP denotes CD4
T32755 54-55 CD denotes +
T32756 56-57 NNP denotes T
T32757 58-63 NNS denotes cells
T32758 63-64 , denotes ,
T32759 65-76 VBN denotes transfected
T32760 77-81 IN denotes with
T32761 82-87 NNP denotes RUNX1
T32762 88-91 CC denotes and
T32763 92-97 NNP denotes RUNX3
T32764 98-103 NNP denotes siRNA
T32765 104-107 CC denotes and
T32766 108-116 VBN denotes cultured
T32767 117-122 IN denotes under
T32768 123-125 NNP denotes iT
T32769 126-129 NN denotes reg
T32770 130-145 NN denotes differentiating
T32771 146-156 NNS denotes conditions
T32772 157-161 VBD denotes were
T32773 162-166 VBN denotes used
T32774 167-169 IN denotes in
T32775 170-172 DT denotes an
T32776 173-175 IN denotes in
T32777 176-181 NN denotes vitro
T32778 182-193 NN denotes suppression
T32779 194-199 NN denotes assay
T32780 199-200 , denotes ,
T32781 201-209 VBN denotes cultured
T32782 210-218 RB denotes together
T32783 219-223 IN denotes with
T32784 224-234 JJ denotes autologous
T32785 235-247 JJ denotes CFSE-labeled
T32786 248-251 NNP denotes CD4
T32787 251-252 CD denotes +
T32788 253-254 NNP denotes T
T32789 255-260 NNS denotes cells
T32790 260-261 , denotes ,
T32791 262-265 CC denotes and
T32792 266-276 VBN denotes stimulated
T32793 277-281 IN denotes with
T32794 282-290 JJ denotes anti-CD3
T32795 291-294 NNP denotes mAb
T32796 294-295 . denotes .
R25078 T32742 T32747 nsubjpass One,shown
R25079 T32743 T32742 prep of,One
R25080 T32744 T32745 nummod three,experiments
R25081 T32745 T32743 pobj experiments,of
R25082 T32746 T32747 auxpass is,shown
R25083 T32747 T32747 ROOT shown,shown
R25084 T32748 T32747 punct .,shown
R25085 T32749 T32752 punct (,Human
R25086 T32750 T32752 nmod D,Human
R25087 T32751 T32752 punct ),Human
R25088 T32752 T32753 npadvmod Human,naive
R25089 T32753 T32757 amod naive,cells
R25090 T32754 T32757 compound CD4,cells
R25091 T32755 T32757 nummod +,cells
R25092 T32756 T32757 compound T,cells
R25093 T32757 T32773 nsubjpass cells,used
R25094 T32758 T32757 punct ",",cells
R25095 T32759 T32757 acl transfected,cells
R25096 T32760 T32759 prep with,transfected
R25097 T32761 T32760 pobj RUNX1,with
R25098 T32762 T32761 cc and,RUNX1
R25099 T32763 T32764 compound RUNX3,siRNA
R25100 T32764 T32761 conj siRNA,RUNX1
R25101 T32765 T32759 cc and,transfected
R25102 T32766 T32759 conj cultured,transfected
R25103 T32767 T32766 prep under,cultured
R25104 T32768 T32769 compound iT,reg
R25105 T32769 T32771 compound reg,conditions
R25106 T32770 T32771 compound differentiating,conditions
R25107 T32771 T32767 pobj conditions,under
R25108 T32772 T32773 auxpass were,used
R25109 T32773 T32773 ROOT used,used
R25110 T32774 T32773 prep in,used
R25111 T32775 T32779 det an,assay
R25112 T32776 T32779 nmod in,assay
R25113 T32777 T32778 amod vitro,suppression
R25114 T32778 T32779 compound suppression,assay
R25115 T32779 T32774 pobj assay,in
R25117 T32781 T32773 conj cultured,used
R25118 T32782 T32781 advmod together,cultured
R25119 T32783 T32781 prep with,cultured
R25120 T32784 T32789 amod autologous,cells
R25121 T32785 T32789 amod CFSE-labeled,cells
R25122 T32786 T32789 nmod CD4,cells
R25123 T32787 T32789 nummod +,cells
R25124 T32788 T32789 compound T,cells
R25125 T32789 T32783 pobj cells,with
R25126 T32790 T32781 punct ",",cultured
R25127 T32791 T32781 cc and,cultured
R25128 T32792 T32781 conj stimulated,cultured
R25129 T32793 T32792 prep with,stimulated
R25130 T32794 T32795 compound anti-CD3,mAb
R25131 T32795 T32793 pobj mAb,with
R25132 T32796 T32773 punct .,used
R25116 T32780 T32773 punct ",",used

GO-CC

Id Subject Object Predicate Lexical cue
T32899 58-63 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T32900 255-260 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T32176 0-295 Sentence denotes One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb.
T169 0-295 Sentence denotes One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb.

events-check-again

Id Subject Object Predicate Lexical cue
T32938 51-54 Protein denotes CD4
T32939 82-87 Protein denotes RUNX1
T32940 92-97 Protein denotes RUNX3
T32941 98-103 Negative_regulation denotes siRNA
T32942 98-103 Negative_regulation denotes siRNA
T32943 248-251 Protein denotes CD4
T32944 287-290 Protein denotes CD3
R25187 T32939 T32941 themeOf RUNX1,siRNA
R25188 T32940 T32942 themeOf RUNX3,siRNA

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T33011 51-55 Protein denotes CD4+
T33012 82-87 Protein denotes RUNX1
T33013 92-103 Protein denotes RUNX3 siRNA
T33014 248-252 Protein denotes CD4+
T33015 282-294 Protein denotes anti-CD3 mAb

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T32160 51-54 Protein denotes CD4
T32161 82-87 Protein denotes RUNX1
T32162 92-97 Protein denotes RUNX3
T32163 98-103 Negative_regulation denotes siRNA
T32164 98-103 Negative_regulation denotes siRNA
T32165 248-251 Protein denotes CD4
T32166 287-290 Protein denotes CD3
R24570 T32161 T32163 themeOf RUNX1,siRNA
R24571 T32162 T32164 themeOf RUNX3,siRNA

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T32500 51-54 P01730 denotes CD4
T32501 82-87 Q01196 denotes RUNX1
T32502 92-97 Q13761 denotes RUNX3
T32503 248-251 P01730 denotes CD4
T32504 287-290 P07766 denotes CD3
T32505 287-290 P20963 denotes CD3
T32506 287-290 P09693 denotes CD3
T32507 287-290 P04234 denotes CD3

test2

Id Subject Object Predicate Lexical cue
T32117 51-54 Protein denotes CD4
T32118 82-87 Protein denotes RUNX1
T32119 92-97 Protein denotes RUNX3
T32120 98-103 Negative_regulation denotes siRNA
T32121 248-251 Protein denotes CD4
T32122 287-290 Protein denotes CD3
R24564 T32118 T32120 themeOf RUNX1,siRNA
R24565 T32119 T32120 themeOf RUNX3,siRNA