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PMC:2800179 / 25092-25765 JSONTXT

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GO-MF

Id Subject Object Predicate Lexical cue
T17417 501-503 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

GO-BP

Id Subject Object Predicate Lexical cue
T9778 0-8 http://purl.obolibrary.org/obo/GO_0009056 denotes Degraded
T9779 114-130 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T9780 114-130 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production
T17413 404-412 http://purl.obolibrary.org/obo/GO_0009056 denotes Degraded
T17414 606-614 http://purl.obolibrary.org/obo/GO_0009056 denotes degraded
T17415 445-460 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T17416 501-503 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9635 0-8 VB denotes Degraded
T9636 9-12 NN denotes CGN
T9637 13-19 VB denotes Induce
T9638 20-22 DT denotes an
T9639 23-31 NN denotes Increase
T9640 32-34 IN denotes in
T9641 35-41 NN denotes ICAM-1
T9642 42-45 CC denotes and
T9643 46-51 NN denotes TNF-α
T9644 52-56 NN denotes mRNA
T9645 57-67 NN denotes Expression
T9646 68-71 DT denotes The
T9647 72-80 NN denotes increase
T9648 81-83 IN denotes in
T9649 84-91 NN denotes surface
T9650 92-98 NN denotes ICAM-1
T9651 99-109 NN denotes expression
T9652 110-113 CC denotes and
T9653 114-119 NN denotes TNF-α
T9654 120-130 NN denotes production
T9655 131-133 IN denotes by
T9656 134-143 NN denotes monocytes
T9657 144-154 VB denotes correlated
T9658 155-159 IN denotes with
T9659 160-162 DT denotes an
T9660 163-175 NN denotes upregulation
T9661 176-178 IN denotes of
T9662 179-183 NN denotes mRNA
T9663 184-187 IN denotes for
T9664 188-193 DT denotes these
T9665 194-203 NN denotes molecules
T9666 205-209 DT denotes Both
T9667 210-212 CD denotes 10
T9668 213-216 NN denotes kDa
T9669 217-220 CC denotes and
T9670 221-223 CD denotes 40
T9671 224-227 NN denotes kDa
T9672 228-232 NN denotes dCGN
T9673 233-240 VB denotes induced
T9674 241-242 DT denotes a
T9675 243-249 JJ denotes robust
T9676 250-258 NN denotes increase
T9677 259-261 IN denotes in
T9678 262-266 NN denotes mRNA
T9679 267-270 IN denotes for
T9680 271-275 CC denotes both
T9681 276-282 NN denotes ICAM-1
T9682 283-286 CC denotes and
T9683 287-292 NN denotes TNF-α
T9684 293-294 -LRB- denotes (
T9685 294-298 NN denotes Fig.
T9686 299-300 CD denotes 6
T9687 300-301 -RRB- denotes )
T9688 301-308 NN denotes . β-act
T9689 308-312 NN denotes in m
T9690 312-318 NN denotes RNA le
T9691 318-322 VB denotes vels
T9692 323-326 RB denotes wer
T9693 326-334 VB denotes e not af
T9694 334-336 IN denotes fe
T9695 336-340 NN denotes cted
T9696 341-350 NN denotes by dCGN t
T17323 404-412 VB denotes Degraded
T17324 413-416 NN denotes CGN
T17325 417-427 VB denotes stimulated
T17326 428-434 NN denotes ICAM-1
T17327 435-438 CC denotes and
T17328 439-444 NN denotes TNF-α
T17329 445-449 NN denotes gene
T17330 450-460 NN denotes expression
T17331 461-463 IN denotes in
T17332 464-473 NN denotes monocytes
T17333 475-489 JJ denotes Representative
T17334 490-497 NN denotes samples
T17335 498-500 IN denotes of
T17336 501-507 NN denotes RT-PCR
T17337 508-516 NN denotes analysis
T17338 517-524 VB denotes showing
T17339 525-529 IN denotes over
T17340 530-540 NN denotes expression
T17341 541-543 IN denotes of
T17342 544-550 NN denotes ICAM-1
T17343 551-554 CC denotes and
T17344 555-560 NN denotes TNF-α
T17345 561-566 IN denotes after
T17346 567-578 NN denotes stimulation
T17347 579-581 IN denotes of
T17348 582-591 NN denotes monocytes
T17349 592-596 IN denotes with
T17350 597-598 CD denotes 1
T17351 599-602 NN denotes g/l
T17352 603-605 IN denotes of
T17353 606-614 VB denotes degraded
T17354 615-619 NNP denotes CGN.
T17355 620-627 NN denotes β-actin
T17356 628-638 NN denotes expression
T17357 639-642 VB denotes was
T17358 643-647 VB denotes used
T17359 648-650 IN denotes as
T17360 651-664 NN denotes normalization
T17361 665-669 NN denotes gene
R8446 T9636 T9635 arg2Of CGN,Degraded
R8447 T9636 T9637 arg1Of CGN,Induce
R8448 T9639 T9637 arg2Of Increase,Induce
R8449 T9639 T9638 arg1Of Increase,an
R8450 T9639 T9640 arg1Of Increase,in
R8451 T9641 T9642 arg1Of ICAM-1,and
R8452 T9642 T9640 arg2Of and,in
R8453 T9645 T9642 arg2Of Expression,and
R8454 T9645 T9643 arg1Of Expression,TNF-α
R8455 T9645 T9644 arg1Of Expression,mRNA
R8456 T9647 T9646 arg1Of increase,The
R8457 T9647 T9648 arg1Of increase,in
R8458 T9647 T9657 arg1Of increase,correlated
R8459 T9651 T9649 arg1Of expression,surface
R8460 T9651 T9650 arg1Of expression,ICAM-1
R8461 T9651 T9652 arg1Of expression,and
R8462 T9652 T9648 arg2Of and,in
R8463 T9652 T9655 arg1Of and,by
R8464 T9654 T9652 arg2Of production,and
R8465 T9654 T9653 arg1Of production,TNF-α
R8466 T9656 T9655 arg2Of monocytes,by
R8467 T9657 T9658 arg1Of correlated,with
R8468 T9660 T9658 arg2Of upregulation,with
R8469 T9660 T9659 arg1Of upregulation,an
R8470 T9660 T9661 arg1Of upregulation,of
R8471 T9662 T9661 arg2Of mRNA,of
R8472 T9662 T9663 arg1Of mRNA,for
R8473 T9665 T9663 arg2Of molecules,for
R8474 T9665 T9664 arg1Of molecules,these
R8475 T9668 T9669 arg1Of kDa,and
R8476 T9669 T9667 arg1Of and,10
R8477 T9670 T9669 arg2Of 40,and
R8478 T9672 T9666 arg1Of dCGN,Both
R8479 T9672 T9668 arg1Of dCGN,kDa
R8480 T9672 T9670 arg1Of dCGN,40
R8481 T9672 T9671 arg1Of dCGN,kDa
R8482 T9672 T9673 arg1Of dCGN,induced
R8483 T9676 T9673 arg2Of increase,induced
R8484 T9676 T9674 arg1Of increase,a
R8485 T9676 T9675 arg1Of increase,robust
R8486 T9676 T9677 arg1Of increase,in
R8487 T9676 T9679 arg1Of increase,for
R8488 T9678 T9677 arg2Of mRNA,in
R8489 T9681 T9682 arg1Of ICAM-1,and
R8490 T9682 T9679 arg2Of and,for
R8491 T9682 T9680 arg1Of and,both
R8492 T9683 T9682 arg2Of TNF-α,and
R8493 T9685 T9684 arg2Of Fig.,(
R8494 T9685 T9686 arg1Of Fig.,6
R8495 T9687 T9684 arg3Of ),(
R8496 T9690 T9684 arg1Of RNA le,(
R8497 T9690 T9688 arg1Of RNA le,. β-act
R8498 T9690 T9689 arg1Of RNA le,in m
R8499 T9690 T9691 arg1Of RNA le,vels
R8500 T9690 T9693 arg2Of RNA le,e not af
R8501 T9693 T9673 arg3Of e not af,induced
R8502 T9693 T9691 arg2Of e not af,vels
R8503 T9693 T9692 arg1Of e not af,wer
R8504 T9696 T9693 arg1Of by dCGN t,e not af
R8505 T9696 T9694 arg2Of by dCGN t,fe
R8506 T9696 T9695 arg1Of by dCGN t,cted
R14828 T17324 T17323 arg2Of CGN,Degraded
R14829 T17324 T17325 arg1Of CGN,stimulated
R14830 T17326 T17327 arg1Of ICAM-1,and
R14831 T17327 T17325 arg2Of and,stimulated
R14832 T17327 T17331 arg1Of and,in
R14833 T17330 T17327 arg2Of expression,and
R14834 T17330 T17328 arg1Of expression,TNF-α
R14835 T17330 T17329 arg1Of expression,gene
R14836 T17332 T17331 arg2Of monocytes,in
R14837 T17334 T17333 arg1Of samples,Representative
R14838 T17334 T17335 arg1Of samples,of
R14839 T17334 T17357 arg1Of samples,was
R14840 T17334 T17358 arg2Of samples,used
R14841 T17337 T17335 arg2Of analysis,of
R14842 T17337 T17336 arg1Of analysis,RT-PCR
R14843 T17337 T17338 arg1Of analysis,showing
R14844 T17338 T17339 arg1Of showing,over
R14845 T17338 T17345 arg1Of showing,after
R14846 T17340 T17339 arg2Of expression,over
R14847 T17340 T17341 arg1Of expression,of
R14848 T17342 T17343 arg1Of ICAM-1,and
R14849 T17343 T17341 arg2Of and,of
R14850 T17344 T17343 arg2Of TNF-α,and
R14851 T17346 T17345 arg2Of stimulation,after
R14852 T17346 T17347 arg1Of stimulation,of
R14853 T17346 T17349 arg1Of stimulation,with
R14854 T17348 T17347 arg2Of monocytes,of
R14855 T17351 T17349 arg2Of g/l,with
R14856 T17351 T17350 arg1Of g/l,1
R14857 T17351 T17352 arg1Of g/l,of
R14858 T17356 T17352 arg2Of expression,of
R14859 T17356 T17353 arg2Of expression,degraded
R14860 T17356 T17354 arg1Of expression,CGN.
R14861 T17356 T17355 arg1Of expression,β-actin
R14862 T17358 T17357 arg2Of used,was
R14863 T17358 T17359 arg1Of used,as
R14864 T17361 T17359 arg2Of gene,as
R14865 T17361 T17360 arg1Of gene,normalization

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T9697 188-203 Anaphor denotes these molecules
T9698 92-98 Antecedent denotes ICAM-1
T9699 114-119 Antecedent denotes TNF-α
R8507 T9697 T9698 boundBy these molecules,ICAM-1
R8508 T9697 T9699 boundBy these molecules,TNF-α

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9710 0-8 JJ denotes Degraded
T9711 9-12 NNP denotes CGN
T9712 13-19 VB denotes Induce
T9713 20-22 DT denotes an
T9714 23-31 VB denotes Increase
T9715 32-34 IN denotes in
T9716 35-41 NNP denotes ICAM-1
T9717 42-45 CC denotes and
T9718 46-51 NNP denotes TNF-α
T9719 52-56 NNP denotes mRNA
T9720 57-67 NNP denotes Expression
T9721 68-71 NNP denotes The
T9722 72-80 NN denotes increase
T9723 81-83 IN denotes in
T9724 84-91 NN denotes surface
T9725 92-98 NN denotes ICAM-1
T9726 99-109 NN denotes expression
T9727 110-113 CC denotes and
T9728 114-119 JJ denotes TNF-α
T9729 120-130 NN denotes production
T9730 131-133 IN denotes by
T9731 134-143 NNS denotes monocytes
T9732 144-154 VBN denotes correlated
T9733 155-159 IN denotes with
T9734 160-162 DT denotes an
T9735 163-175 NN denotes upregulation
T9736 176-178 IN denotes of
T9737 179-183 NNP denotes mRNA
T9738 184-187 IN denotes for
T9739 188-193 DT denotes these
T9740 194-203 NNS denotes molecules
T9741 203-204 . denotes .
T9742 205-209 DT denotes Both
T9743 210-212 CD denotes 10
T9744 213-216 NN denotes kDa
T9745 217-220 CC denotes and
T9746 221-223 CD denotes 40
T9747 224-227 NNP denotes kDa
T9748 228-232 NNP denotes dCGN
T9749 233-240 VBD denotes induced
T9750 241-242 DT denotes a
T9751 243-249 JJ denotes robust
T9752 250-258 NN denotes increase
T9753 259-261 IN denotes in
T9754 262-266 NNP denotes mRNA
T9755 267-270 IN denotes for
T9756 271-275 DT denotes both
T9757 276-282 NNP denotes ICAM-1
T9758 283-286 CC denotes and
T9759 287-292 NNP denotes TNF-α
T9760 293-294 -LRB- denotes (
T9761 294-298 NNP denotes Fig.
T9762 299-300 CD denotes 6
T9763 300-301 -RRB- denotes )
T9764 301-302 . denotes .
T9765 303-310 JJ denotes β-actin
T9766 311-315 NN denotes mRNA
T9767 316-322 NNS denotes levels
T9768 323-327 VBD denotes were
T9769 328-331 RB denotes not
T9770 332-340 VBN denotes affected
T9771 341-343 IN denotes by
T9772 344-348 NNP denotes dCGN
T9773 349-358 NN denotes treatment
T9774 358-359 . denotes .
T17369 404-412 JJ denotes Degraded
T17370 413-416 NNP denotes CGN
T17371 417-427 VBD denotes stimulated
T17372 428-434 NNP denotes ICAM-1
T17373 435-438 CC denotes and
T17374 439-444 NNP denotes TNF-α
T17375 445-449 NN denotes gene
T17376 450-460 NN denotes expression
T17377 461-463 IN denotes in
T17378 464-473 NNS denotes monocytes
T17379 473-474 . denotes .
T17380 475-489 NNP denotes Representative
T17381 490-497 NNS denotes samples
T17382 498-500 IN denotes of
T17383 501-507 NN denotes RT-PCR
T17384 508-516 NN denotes analysis
T17385 517-524 VBG denotes showing
T17386 525-529 IN denotes over
T17387 530-540 NN denotes expression
T17388 541-543 IN denotes of
T17389 544-550 NNP denotes ICAM-1
T17390 551-554 CC denotes and
T17391 555-560 NNP denotes TNF-α
T17392 561-566 IN denotes after
T17393 567-578 NN denotes stimulation
T17394 579-581 IN denotes of
T17395 582-591 NNS denotes monocytes
T17396 592-596 IN denotes with
T17397 597-598 CD denotes 1
T17398 599-602 NN denotes g/l
T17399 603-605 IN denotes of
T17400 606-614 JJ denotes degraded
T17401 615-618 NNP denotes CGN
T17402 618-619 . denotes .
T17403 620-627 JJ denotes β-actin
T17404 628-638 NN denotes expression
T17405 639-642 VBD denotes was
T17406 643-647 VBN denotes used
T17407 648-650 IN denotes as
T17408 651-664 NN denotes normalization
T17409 665-669 NN denotes gene
T17410 669-670 . denotes .
R8509 T9710 T9712 amod Degraded,Induce
R8510 T9711 T9712 nsubj CGN,Induce
R8511 T9712 T9712 ROOT Induce,Induce
R8512 T9713 T9714 det an,Increase
R8513 T9714 T9712 dobj Increase,Induce
R8514 T9715 T9714 prep in,Increase
R8515 T9716 T9715 pobj ICAM-1,in
R8516 T9717 T9716 cc and,ICAM-1
R8517 T9718 T9719 compound TNF-α,mRNA
R8518 T9719 T9720 compound mRNA,Expression
R8519 T9720 T9716 conj Expression,ICAM-1
R8520 T9721 T9722 det The,increase
R8521 T9722 T9712 dobj increase,Induce
R8522 T9723 T9722 prep in,increase
R8523 T9724 T9726 nmod surface,expression
R8524 T9725 T9726 compound ICAM-1,expression
R8525 T9726 T9723 pobj expression,in
R8526 T9727 T9726 cc and,expression
R8527 T9728 T9729 amod TNF-α,production
R8528 T9729 T9726 conj production,expression
R8529 T9730 T9722 prep by,increase
R8530 T9731 T9730 pobj monocytes,by
R8531 T9732 T9731 acl correlated,monocytes
R8532 T9733 T9732 prep with,correlated
R8533 T9734 T9735 det an,upregulation
R8534 T9735 T9733 pobj upregulation,with
R8535 T9736 T9735 prep of,upregulation
R8536 T9737 T9736 pobj mRNA,of
R8537 T9738 T9735 prep for,upregulation
R8538 T9739 T9740 det these,molecules
R8539 T9740 T9738 pobj molecules,for
R8540 T9741 T9712 punct .,Induce
R8541 T9742 T9744 preconj Both,kDa
R8542 T9743 T9744 nummod 10,kDa
R8543 T9744 T9749 nsubj kDa,induced
R8544 T9745 T9744 cc and,kDa
R8545 T9746 T9748 nummod 40,dCGN
R8546 T9747 T9748 compound kDa,dCGN
R8547 T9748 T9744 conj dCGN,kDa
R8548 T9749 T9749 ROOT induced,induced
R8549 T9750 T9752 det a,increase
R8550 T9751 T9752 amod robust,increase
R8551 T9752 T9749 dobj increase,induced
R8552 T9753 T9752 prep in,increase
R8553 T9754 T9753 pobj mRNA,in
R8554 T9755 T9752 prep for,increase
R8555 T9756 T9757 det both,ICAM-1
R8556 T9757 T9755 pobj ICAM-1,for
R8557 T9758 T9757 cc and,ICAM-1
R8558 T9759 T9757 conj TNF-α,ICAM-1
R8559 T9760 T9761 punct (,Fig.
R8560 T9761 T9759 appos Fig.,TNF-α
R8561 T9762 T9761 nummod 6,Fig.
R8562 T9763 T9759 punct ),TNF-α
R8563 T9764 T9749 punct .,induced
R8564 T9765 T9767 amod β-actin,levels
R8565 T9766 T9767 compound mRNA,levels
R8566 T9767 T9770 nsubjpass levels,affected
R8567 T9768 T9770 auxpass were,affected
R8568 T9769 T9770 neg not,affected
R8569 T9770 T9770 ROOT affected,affected
R8570 T9771 T9770 agent by,affected
R8571 T9772 T9773 compound dCGN,treatment
R8572 T9773 T9771 pobj treatment,by
R8573 T9774 T9770 punct .,affected
R14866 T17369 T17370 amod Degraded,CGN
R14867 T17370 T17371 nsubj CGN,stimulated
R14868 T17371 T17371 ROOT stimulated,stimulated
R14869 T17372 T17376 poss ICAM-1,expression
R14870 T17373 T17372 cc and,ICAM-1
R14871 T17374 T17372 conj TNF-α,ICAM-1
R14872 T17375 T17376 compound gene,expression
R14873 T17376 T17371 dobj expression,stimulated
R14874 T17377 T17371 prep in,stimulated
R14875 T17378 T17377 pobj monocytes,in
R14876 T17379 T17371 punct .,stimulated
R14877 T17380 T17380 ROOT Representative,Representative
R14878 T17381 T17380 dobj samples,Representative
R14879 T17382 T17381 prep of,samples
R14880 T17383 T17384 amod RT-PCR,analysis
R14881 T17384 T17382 pobj analysis,of
R14882 T17385 T17384 acl showing,analysis
R14883 T17386 T17385 prep over,showing
R14884 T17387 T17386 pobj expression,over
R14885 T17388 T17387 prep of,expression
R14886 T17389 T17388 pobj ICAM-1,of
R14887 T17390 T17389 cc and,ICAM-1
R14888 T17391 T17389 conj TNF-α,ICAM-1
R14889 T17392 T17385 prep after,showing
R14890 T17393 T17392 pobj stimulation,after
R14891 T17394 T17393 prep of,stimulation
R14892 T17395 T17394 pobj monocytes,of
R14893 T17396 T17380 prep with,Representative
R14894 T17397 T17398 nummod 1,g/l
R14895 T17398 T17396 pobj g/l,with
R14896 T17399 T17398 prep of,g/l
R14897 T17400 T17401 amod degraded,CGN
R14898 T17401 T17399 pobj CGN,of
R14899 T17402 T17380 punct .,Representative
R14900 T17403 T17404 amod β-actin,expression
R14901 T17404 T17406 nsubjpass expression,used
R14902 T17405 T17406 auxpass was,used
R14903 T17406 T17406 ROOT used,used
R14904 T17407 T17406 prep as,used
R14905 T17408 T17409 compound normalization,gene
R14906 T17409 T17407 pobj gene,as
R14907 T17410 T17406 punct .,used

sentences

Id Subject Object Predicate Lexical cue
T9632 0-67 Sentence denotes Degraded CGN Induce an Increase in ICAM-1 and TNF-α mRNA Expression
T9633 68-204 Sentence denotes The increase in surface ICAM-1 expression and TNF-α production by monocytes correlated with an upregulation of mRNA for these molecules.
T9634 205-359 Sentence denotes Both 10 kDa and 40 kDa dCGN induced a robust increase in mRNA for both ICAM-1 and TNF-α (Fig. 6). β-actin mRNA levels were not affected by dCGN treatment.
T17321 404-474 Sentence denotes Degraded CGN stimulated ICAM-1 and TNF-α gene expression in monocytes.
T17322 475-670 Sentence denotes Representative samples of RT-PCR analysis showing over expression of ICAM-1 and TNF-α after stimulation of monocytes with 1 g/l of degraded CGN. β-actin expression was used as normalization gene.
T221 0-67 Sentence denotes Degraded CGN Induce an Increase in ICAM-1 and TNF-α mRNA Expression
T222 68-204 Sentence denotes The increase in surface ICAM-1 expression and TNF-α production by monocytes correlated with an upregulation of mRNA for these molecules.
T223 205-359 Sentence denotes Both 10 kDa and 40 kDa dCGN induced a robust increase in mRNA for both ICAM-1 and TNF-α (Fig. 6). β-actin mRNA levels were not affected by dCGN treatment.
T224 360-474 Sentence denotes 10.1371/journal.pone.0008666.g006 Figure 6 Degraded CGN stimulated ICAM-1 and TNF-α gene expression in monocytes.
T225 475-670 Sentence denotes Representative samples of RT-PCR analysis showing over expression of ICAM-1 and TNF-α after stimulation of monocytes with 1 g/l of degraded CGN. β-actin expression was used as normalization gene.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T9829 13-19 Positive_regulation denotes Induce
T9830 13-19 Positive_regulation denotes Induce
T9831 23-31 Positive_regulation denotes Increase
T9832 23-31 Positive_regulation denotes Increase
T9833 35-41 Protein denotes ICAM-1
T9834 46-51 Protein denotes TNF-α
T9835 52-67 Transcription denotes mRNA Expression
T9836 52-67 Transcription denotes mRNA Expression
T9837 72-80 Positive_regulation denotes increase
T9838 72-80 Positive_regulation denotes increase
T9839 92-98 Protein denotes ICAM-1
T9840 99-109 Gene_expression denotes expression
T9841 114-119 Protein denotes TNF-α
T9842 120-130 Gene_expression denotes production
T9843 163-175 Positive_regulation denotes upregulation
T9844 163-175 Positive_regulation denotes upregulation
T9845 233-240 Positive_regulation denotes induced
T9846 233-240 Positive_regulation denotes induced
T9847 250-258 Positive_regulation denotes increase
T9848 250-258 Positive_regulation denotes increase
T9849 276-282 Protein denotes ICAM-1
T9850 287-292 Protein denotes TNF-α
T9851 303-310 Protein denotes β-actin
T9852 332-340 Regulation denotes affected true
T17442 417-427 Positive_regulation denotes stimulated
T17443 417-427 Positive_regulation denotes stimulated
T17444 428-434 Protein denotes ICAM-1
T17445 439-444 Protein denotes TNF-α
T17446 450-460 Gene_expression denotes expression
T17447 450-460 Gene_expression denotes expression
T17448 530-540 Gene_expression denotes expression
T17449 530-540 Gene_expression denotes expression
T17450 544-550 Protein denotes ICAM-1
T17451 555-560 Protein denotes TNF-α
T17452 620-627 Protein denotes β-actin
T17453 628-638 Gene_expression denotes expression
R8608 T9831 T9829 themeOf Increase,Induce
R8609 T9832 T9830 themeOf Increase,Induce
R8610 T9833 T9835 themeOf ICAM-1,mRNA Expression
R8611 T9834 T9836 themeOf TNF-α,mRNA Expression
R8612 T9835 T9831 themeOf mRNA Expression,Increase
R8613 T9836 T9832 themeOf mRNA Expression,Increase
R8614 T9839 T9840 themeOf ICAM-1,expression
R8615 T9839 T9844 themeOf ICAM-1,upregulation
R8616 T9840 T9838 themeOf expression,increase
R8617 T9841 T9842 themeOf TNF-α,production
R8618 T9841 T9843 themeOf TNF-α,upregulation
R8619 T9842 T9837 themeOf production,increase
R8620 T9847 T9846 themeOf increase,induced
R8621 T9848 T9845 themeOf increase,induced
R8622 T9849 T9848 themeOf ICAM-1,increase
R8623 T9850 T9847 themeOf TNF-α,increase
R8624 T9851 T9852 themeOf β-actin,affected
R14922 T17444 T17447 themeOf ICAM-1,expression
R14923 T17445 T17446 themeOf TNF-α,expression
R14924 T17446 T17443 themeOf expression,stimulated
R14925 T17447 T17442 themeOf expression,stimulated
R14926 T17450 T17448 themeOf ICAM-1,expression
R14927 T17451 T17449 themeOf TNF-α,expression
R14928 T17452 T17453 themeOf β-actin,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T9853 35-41 Protein denotes ICAM-1
T9854 46-56 Protein denotes TNF-α mRNA
T9855 57-67 Gene_expression denotes Expression
T9856 57-67 Gene_expression denotes Expression
T9857 23-31 Positive_regulation denotes Increase
T9858 23-31 Positive_regulation denotes Increase
T9859 84-98 Protein denotes surface ICAM-1
T9860 114-119 Protein denotes TNF-α
T9861 99-109 Gene_expression denotes expression
T9862 120-130 Gene_expression denotes production
T9863 72-80 Positive_regulation denotes increase
T9864 72-80 Positive_regulation denotes increase
T9865 276-282 Protein denotes ICAM-1
T9866 287-292 Protein denotes TNF-α
T9867 294-297 Protein denotes Fig
T9868 303-315 Protein denotes β-actin mRNA
T9869 250-258 Positive_regulation denotes increase
T9870 250-258 Positive_regulation denotes increase
T9871 332-340 Regulation denotes affected
T17454 413-416 Protein denotes CGN
T17455 428-434 Protein denotes ICAM-1
T17456 439-444 Protein denotes TNF-α
T17457 404-412 Protein_catabolism denotes Degraded
T17458 450-460 Gene_expression denotes expression
T17459 450-460 Gene_expression denotes expression
T17460 417-427 Positive_regulation denotes stimulated
T17461 417-427 Positive_regulation denotes stimulated
T17462 544-550 Protein denotes ICAM-1
T17463 555-560 Protein denotes TNF-α
T17464 615-618 Protein denotes CGN
T17465 620-627 Protein denotes β-actin
T17466 530-540 Gene_expression denotes expression
T17467 530-540 Gene_expression denotes expression
T17468 628-638 Gene_expression denotes expression
T17469 628-638 Gene_expression denotes expression
R8625 T9853 T9855 themeOf ICAM-1,Expression
R8626 T9854 T9856 themeOf TNF-α mRNA,Expression
R8627 T9855 T9857 themeOf Expression,Increase
R8628 T9856 T9858 themeOf Expression,Increase
R8629 T9859 T9861 themeOf surface ICAM-1,expression
R8630 T9860 T9862 themeOf TNF-α,production
R8631 T9861 T9863 themeOf expression,increase
R8632 T9862 T9864 themeOf production,increase
R8633 T9865 T9869 themeOf ICAM-1,increase
R8634 T9866 T9870 themeOf TNF-α,increase
R8635 T9868 T9871 themeOf β-actin mRNA,affected
R14929 T17454 T17457 themeOf CGN,Degraded
R14930 T17455 T17458 themeOf ICAM-1,expression
R14931 T17456 T17459 themeOf TNF-α,expression
R14932 T17457 T17460 causeOf Degraded,stimulated
R14933 T17457 T17461 causeOf Degraded,stimulated
R14934 T17458 T17460 themeOf expression,stimulated
R14935 T17459 T17461 themeOf expression,stimulated
R14936 T17462 T17466 themeOf ICAM-1,expression
R14937 T17463 T17467 themeOf TNF-α,expression
R14938 T17464 T17468 themeOf CGN,expression
R14939 T17465 T17469 themeOf β-actin,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T9619 99-109 Gene_expression denotes expression
T9620 114-119 Protein denotes TNF-α
T9621 120-130 Gene_expression denotes production
T9622 163-175 Positive_regulation denotes upregulation
T9624 233-240 Positive_regulation denotes induced
T9625 233-240 Positive_regulation denotes induced
T9626 250-258 Positive_regulation denotes increase
T9627 250-258 Positive_regulation denotes increase
T9628 276-282 Protein denotes ICAM-1
T9629 287-292 Protein denotes TNF-α
T9630 303-310 Protein denotes β-actin
T9631 332-340 Regulation denotes affected true
T17309 417-427 Positive_regulation denotes stimulated
T17310 417-427 Positive_regulation denotes stimulated
T17311 428-434 Protein denotes ICAM-1
T17312 439-444 Protein denotes TNF-α
T17313 450-460 Gene_expression denotes expression
T17314 450-460 Gene_expression denotes expression
T17315 530-540 Gene_expression denotes expression
T17316 530-540 Gene_expression denotes expression
T17317 544-550 Protein denotes ICAM-1
T17318 555-560 Protein denotes TNF-α
T17319 620-627 Protein denotes β-actin
T17320 628-638 Gene_expression denotes expression
T9608 13-19 Positive_regulation denotes Induce
T9609 13-19 Positive_regulation denotes Induce
T9610 23-31 Positive_regulation denotes Increase
T9611 23-31 Positive_regulation denotes Increase
T9612 35-41 Protein denotes ICAM-1
T9613 46-51 Protein denotes TNF-α
T9614 52-67 Transcription denotes mRNA Expression
T9615 52-67 Transcription denotes mRNA Expression
T9616 72-80 Positive_regulation denotes increase
T9617 72-80 Positive_regulation denotes increase
T9618 92-98 Protein denotes ICAM-1
T9623 163-175 Positive_regulation denotes upregulation
R8429 T9610 T9608 themeOf Increase,Induce
R8430 T9611 T9609 themeOf Increase,Induce
R8431 T9612 T9614 themeOf ICAM-1,mRNA Expression
R8432 T9613 T9615 themeOf TNF-α,mRNA Expression
R8433 T9614 T9610 themeOf mRNA Expression,Increase
R8434 T9615 T9611 themeOf mRNA Expression,Increase
R8435 T9618 T9619 themeOf ICAM-1,expression
R8436 T9618 T9623 themeOf ICAM-1,upregulation
R8437 T9619 T9617 themeOf expression,increase
R8438 T9620 T9621 themeOf TNF-α,production
R8439 T9620 T9622 themeOf TNF-α,upregulation
R8440 T9621 T9616 themeOf production,increase
R8441 T9626 T9625 themeOf increase,induced
R8442 T9627 T9624 themeOf increase,induced
R8443 T9628 T9627 themeOf ICAM-1,increase
R8444 T9629 T9626 themeOf TNF-α,increase
R8445 T9630 T9631 themeOf β-actin,affected
R14825 T17317 T17315 themeOf ICAM-1,expression
R14826 T17318 T17316 themeOf TNF-α,expression
R14827 T17319 T17320 themeOf β-actin,expression
R14821 T17311 T17314 themeOf ICAM-1,expression
R14822 T17312 T17313 themeOf TNF-α,expression
R14823 T17313 T17310 themeOf expression,stimulated
R14824 T17314 T17309 themeOf expression,stimulated

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9700 35-41 P05362 denotes ICAM-1
T9701 46-49 P01375 denotes TNF
T9702 46-51 P01375 denotes TNF-α
T9703 92-98 P05362 denotes ICAM-1
T9704 114-117 P01375 denotes TNF
T9705 114-119 P01375 denotes TNF-α
T9706 276-282 P05362 denotes ICAM-1
T9707 287-290 P01375 denotes TNF
T9708 287-292 P01375 denotes TNF-α
T9709 303-310 P60709 denotes β-actin
T17362 428-434 P05362 denotes ICAM-1
T17363 439-442 P01375 denotes TNF
T17364 439-444 P01375 denotes TNF-α
T17365 544-550 P05362 denotes ICAM-1
T17366 555-558 P01375 denotes TNF
T17367 555-560 P01375 denotes TNF-α
T17368 620-627 P60709 denotes β-actin

test2

Id Subject Object Predicate Lexical cue
T17300 417-427 Positive_regulation denotes stimulated
T17301 428-434 Protein denotes ICAM-1
T17302 439-444 Protein denotes TNF-α
T17303 450-460 Gene_expression denotes expression
T17304 530-540 Gene_expression denotes expression
T17305 544-550 Protein denotes ICAM-1
T17306 555-560 Protein denotes TNF-α
T17307 620-627 Protein denotes β-actin
T17308 628-638 Gene_expression denotes expression
R14815 T17301 T17303 themeOf ICAM-1,expression
R14816 T17302 T17303 themeOf TNF-α,expression
R14817 T17303 T17300 themeOf expression,stimulated
R14818 T17305 T17304 themeOf ICAM-1,expression
R14819 T17306 T17304 themeOf TNF-α,expression
R14820 T17307 T17308 themeOf β-actin,expression