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PMC:2791889 / 9204-9319 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5612 6-9 P01730 denotes CD4
T5613 40-45 Q14765 denotes STAT4
T5614 101-106 P29459 denotes IL-12
T5615 101-106 P29460 denotes IL-12
T5616 111-114 E2RVI8 denotes OVA

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4900 6-9 Protein denotes CD4
T4901 27-36 Negative_regulation denotes deficient
T4902 40-45 Protein denotes STAT4
T4903 101-106 Protein denotes IL-12
T4904 111-114 Protein denotes OVA
R3693 T4902 T4901 themeOf STAT4,deficient

2_test

Id Subject Object Predicate Lexical cue
19646904-9846495-46582687 62-66 9846495 denotes 1998
T54011 62-66 9846495 denotes 1998

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5091 0-5 JJ denotes Naive
T5092 6-10 JJ denotes CD4+
T5093 11-18 NN denotes D011.10
T5094 19-26 NN denotes T cells
T5095 27-36 JJ denotes deficient
T5096 37-39 IN denotes in
T5097 40-45 NN denotes STAT4
T5098 46-47 -LRB- denotes (
T5099 47-53 NNP denotes Ouyang
T5100 54-60 NNP denotes et al.
T5101 60-61 -COMMA- denotes ,
T5102 62-66 CD denotes 1998
T5103 66-67 -RRB- denotes )
T5104 68-72 VB denotes were
T5105 73-81 VB denotes cultured
T5106 82-84 IN denotes in
T5107 85-88 DT denotes the
T5108 89-97 NN denotes presence
T5109 98-100 IN denotes of
T5110 101-106 NN denotes IL-12
T5111 107-110 CC denotes and
T5112 111-114 NN denotes OVA
R3823 T5094 T5091 arg1Of T cells,Naive
R3824 T5094 T5092 arg1Of T cells,CD4+
R3825 T5094 T5093 arg1Of T cells,D011.10
R3826 T5094 T5095 arg1Of T cells,deficient
R3827 T5094 T5098 arg1Of T cells,(
R3828 T5094 T5104 arg1Of T cells,were
R3829 T5094 T5105 arg2Of T cells,cultured
R3830 T5095 T5096 arg1Of deficient,in
R3831 T5097 T5096 arg2Of STAT4,in
R3832 T5100 T5098 arg2Of et al.,(
R3833 T5100 T5099 arg1Of et al.,Ouyang
R3834 T5100 T5101 arg1Of et al.,","
R3835 T5102 T5101 arg2Of 1998,","
R3836 T5103 T5098 arg3Of ),(
R3837 T5105 T5104 arg2Of cultured,were
R3838 T5105 T5106 arg1Of cultured,in
R3839 T5108 T5106 arg2Of presence,in
R3840 T5108 T5107 arg1Of presence,the
R3841 T5108 T5109 arg1Of presence,of
R3842 T5110 T5111 arg1Of IL-12,and
R3843 T5111 T5109 arg2Of and,of
R3844 T5112 T5111 arg2Of OVA,and

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5736 0-5 JJ denotes Naive
T5737 6-9 NNP denotes CD4
T5738 9-10 NNP denotes +
T5739 11-15 NNP denotes D011
T5740 15-18 CD denotes .10
T5741 19-20 NNP denotes T
T5742 21-26 NNS denotes cells
T5743 27-36 NN denotes deficient
T5744 37-39 IN denotes in
T5745 40-45 NNP denotes STAT4
T5746 46-47 -LRB- denotes (
T5747 47-53 NNP denotes Ouyang
T5748 54-56 FW denotes et
T5749 57-60 FW denotes al.
T5750 60-61 , denotes ,
T5751 62-66 CD denotes 1998
T5752 66-67 -RRB- denotes )
T5753 68-72 VBD denotes were
T5754 73-81 VBN denotes cultured
T5755 82-84 IN denotes in
T5756 85-88 DT denotes the
T5757 89-97 NN denotes presence
T5758 98-100 IN denotes of
T5759 101-106 NN denotes IL-12
T5760 107-110 CC denotes and
T5761 111-114 NNP denotes OVA
T5762 114-115 . denotes .
R4394 T5736 T5742 amod Naive,cells
R4395 T5737 T5742 nmod CD4,cells
R4396 T5738 T5742 nmod +,cells
R4397 T5739 T5742 nmod D011,cells
R4398 T5740 T5742 nummod .10,cells
R4399 T5741 T5742 compound T,cells
R4400 T5742 T5753 nsubj cells,were
R4401 T5743 T5742 acl deficient,cells
R4402 T5744 T5743 prep in,deficient
R4403 T5745 T5744 pobj STAT4,in
R4404 T5746 T5749 punct (,al.
R4405 T5747 T5749 nmod Ouyang,al.
R4406 T5748 T5749 nmod et,al.
R4407 T5749 T5743 appos al.,deficient
R4408 T5750 T5749 punct ",",al.
R4409 T5751 T5749 npadvmod 1998,al.
R4410 T5752 T5742 punct ),cells
R4411 T5753 T5753 ROOT were,were
R4412 T5754 T5753 acomp cultured,were
R4413 T5755 T5754 prep in,cultured
R4414 T5756 T5757 det the,presence
R4415 T5757 T5755 pobj presence,in
R4416 T5758 T5757 prep of,presence
R4417 T5759 T5758 pobj IL-12,of
R4418 T5760 T5759 cc and,IL-12
R4419 T5761 T5759 conj OVA,IL-12
R4420 T5762 T5753 punct .,were

GO-MF

Id Subject Object Predicate Lexical cue
T6375 101-106 http://purl.obolibrary.org/obo/GO_0005143 denotes IL-12

GO-CC

Id Subject Object Predicate Lexical cue
T6383 21-26 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T5021 0-115 Sentence denotes Naive CD4+ D011.10 T cells deficient in STAT4 (Ouyang et al., 1998) were cultured in the presence of IL-12 and OVA.
T48 0-115 Sentence denotes Naive CD4+ D011.10 T cells deficient in STAT4 (Ouyang et al., 1998) were cultured in the presence of IL-12 and OVA.

events-check-again

Id Subject Object Predicate Lexical cue
T6684 6-9 Protein denotes CD4
T6685 27-36 Negative_regulation denotes deficient
T6686 40-45 Protein denotes STAT4
T6687 101-106 Protein denotes IL-12
T6688 111-114 Protein denotes OVA
R5092 T6686 T6685 themeOf STAT4,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T6815 40-45 Protein denotes STAT4
T6816 101-106 Protein denotes IL-12
T6817 27-36 Negative_regulation denotes deficient
R5192 T6815 T6817 themeOf STAT4,deficient

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T4773 6-9 Protein denotes CD4 true
T4774 27-36 Negative_regulation denotes deficient true
T4775 40-45 Protein denotes STAT4
T4776 101-106 Protein denotes IL-12
T4777 111-114 Protein denotes OVA
R3614 T4775 T4774 themeOf STAT4,deficient