PMC:2791889 / 4348-4770 JSONTXT

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    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1171","span":{"begin":101,"end":133},"obj":"P28482"},{"id":"T1172","span":{"begin":101,"end":133},"obj":"P27361"},{"id":"T1173","span":{"begin":188,"end":193},"obj":"P01579"},{"id":"T1174","span":{"begin":201,"end":206},"obj":"P29459"},{"id":"T1175","span":{"begin":201,"end":206},"obj":"P29460"},{"id":"T1176","span":{"begin":267,"end":271},"obj":"P27361"},{"id":"T1177","span":{"begin":276,"end":280},"obj":"P28482"},{"id":"T1178","span":{"begin":317,"end":321},"obj":"P05112"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1078","span":{"begin":158,"end":164},"obj":"Positive_regulation"},{"id":"T1079","span":{"begin":178,"end":187},"obj":"Gene_expression"},{"id":"T1080","span":{"begin":188,"end":193},"obj":"Protein"},{"id":"T1081","span":{"begin":201,"end":206},"obj":"Protein"},{"id":"T1082","span":{"begin":207,"end":218},"obj":"Regulation"},{"id":"T1083","span":{"begin":267,"end":271},"obj":"Protein"},{"id":"T1084","span":{"begin":276,"end":280},"obj":"Protein"},{"id":"T1085","span":{"begin":281,"end":291},"obj":"Positive_regulation"},{"id":"T1086","span":{"begin":281,"end":291},"obj":"Positive_regulation"},{"id":"T1087","span":{"begin":293,"end":298},"obj":"Positive_regulation"},{"id":"T1088","span":{"begin":293,"end":298},"obj":"Positive_regulation"},{"id":"T1089","span":{"begin":317,"end":321},"obj":"Protein"},{"id":"T1090","span":{"begin":322,"end":331},"obj":"Localization"}],"relations":[{"id":"R785","pred":"themeOf","subj":"T1079","obj":"T1078"},{"id":"R786","pred":"themeOf","subj":"T1079","obj":"T1082"},{"id":"R787","pred":"themeOf","subj":"T1080","obj":"T1079"},{"id":"R788","pred":"causeOf","subj":"T1081","obj":"T1082"},{"id":"R789","pred":"themeOf","subj":"T1083","obj":"T1086"},{"id":"R790","pred":"themeOf","subj":"T1084","obj":"T1085"},{"id":"R791","pred":"causeOf","subj":"T1085","obj":"T1088"},{"id":"R792","pred":"causeOf","subj":"T1086","obj":"T1087"},{"id":"R793","pred":"themeOf","subj":"T1089","obj":"T1090"},{"id":"R794","pred":"themeOf","subj":"T1090","obj":"T1087"},{"id":"R795","pred":"themeOf","subj":"T1090","obj":"T1088"}],"attributes":[{"id":"M5","pred":"Negation","subj":"T1082","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    2_test

    {"project":"2_test","denotations":[{"id":"19646904-7595230-46582682","span":{"begin":416,"end":420},"obj":"7595230"},{"id":"19646904-7595228-46582682","span":{"begin":416,"end":420},"obj":"7595228"},{"id":"19646904-12594266-46582682","span":{"begin":416,"end":420},"obj":"12594266"},{"id":"19646904-16172258-46582682","span":{"begin":416,"end":420},"obj":"16172258"},{"id":"T93907","span":{"begin":416,"end":420},"obj":"7595230"},{"id":"T87974","span":{"begin":416,"end":420},"obj":"7595228"},{"id":"T12507","span":{"begin":416,"end":420},"obj":"12594266"},{"id":"T81044","span":{"begin":416,"end":420},"obj":"16172258"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    bionlp-st-ge-2016-spacy-parsed

    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high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T2137","span":{"begin":46,"end":49},"obj":"http://purl.obolibrary.org/obo/GO_0006283"},{"id":"T2173","span":{"begin":96,"end":99},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T2174","span":{"begin":135,"end":139},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T2175","span":{"begin":267,"end":271},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T2177","span":{"begin":276,"end":280},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T2180","span":{"begin":109,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0034199"},{"id":"T2181","span":{"begin":109,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0032147"},{"id":"T2182","span":{"begin":109,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0030295"},{"id":"T2183","span":{"begin":109,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0032111"},{"id":"T2184","span":{"begin":141,"end":156},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T2186","span":{"begin":267,"end":291},"obj":"http://purl.obolibrary.org/obo/GO_0070374"},{"id":"T2187","span":{"begin":303,"end":321},"obj":"http://purl.obolibrary.org/obo/GO_0071353"},{"id":"T2188","span":{"begin":303,"end":321},"obj":"http://purl.obolibrary.org/obo/GO_0070670"},{"id":"T2189","span":{"begin":317,"end":331},"obj":"http://purl.obolibrary.org/obo/GO_0072602"},{"id":"T2190","span":{"begin":322,"end":331},"obj":"http://purl.obolibrary.org/obo/GO_0046903"},{"id":"T2157","span":{"begin":50,"end":59},"obj":"http://purl.obolibrary.org/obo/GO_0023052"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T2206","span":{"begin":201,"end":206},"obj":"http://purl.obolibrary.org/obo/GO_0005143"},{"id":"T2211","span":{"begin":317,"end":321},"obj":"http://purl.obolibrary.org/obo/GO_0005136"},{"id":"T2217","span":{"begin":96,"end":99},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T2218","span":{"begin":135,"end":139},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T2219","span":{"begin":267,"end":271},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T2221","span":{"begin":276,"end":280},"obj":"http://purl.obolibrary.org/obo/GO_0004707"},{"id":"T2224","span":{"begin":109,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0030295"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T2242","span":{"begin":46,"end":49},"obj":"http://purl.obolibrary.org/obo/GO_0042101"},{"id":"T2246","span":{"begin":64,"end":77},"obj":"http://purl.obolibrary.org/obo/GO_0005576"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1128","span":{"begin":0,"end":422},"obj":"Sentence"},{"id":"T24","span":{"begin":0,"end":422},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T2515","span":{"begin":158,"end":164},"obj":"Positive_regulation"},{"id":"T2516","span":{"begin":178,"end":187},"obj":"Gene_expression"},{"id":"T2517","span":{"begin":188,"end":193},"obj":"Protein"},{"id":"T2518","span":{"begin":201,"end":206},"obj":"Protein"},{"id":"T2519","span":{"begin":207,"end":218},"obj":"Regulation"},{"id":"T2520","span":{"begin":267,"end":271},"obj":"Protein"},{"id":"T2521","span":{"begin":276,"end":280},"obj":"Protein"},{"id":"T2522","span":{"begin":281,"end":291},"obj":"Positive_regulation"},{"id":"T2523","span":{"begin":281,"end":291},"obj":"Positive_regulation"},{"id":"T2524","span":{"begin":293,"end":298},"obj":"Positive_regulation"},{"id":"T2525","span":{"begin":293,"end":298},"obj":"Positive_regulation"},{"id":"T2526","span":{"begin":317,"end":321},"obj":"Protein"},{"id":"T2527","span":{"begin":322,"end":331},"obj":"Localization"}],"relations":[{"id":"R1925","pred":"themeOf","subj":"T2516","obj":"T2515"},{"id":"R1926","pred":"themeOf","subj":"T2516","obj":"T2519"},{"id":"R1927","pred":"themeOf","subj":"T2517","obj":"T2516"},{"id":"R1928","pred":"causeOf","subj":"T2518","obj":"T2519"},{"id":"R1929","pred":"themeOf","subj":"T2520","obj":"T2523"},{"id":"R1930","pred":"themeOf","subj":"T2521","obj":"T2522"},{"id":"R1932","pred":"causeOf","subj":"T2522","obj":"T2525"},{"id":"R1933","pred":"causeOf","subj":"T2523","obj":"T2524"},{"id":"R1936","pred":"themeOf","subj":"T2526","obj":"T2527"},{"id":"R1938","pred":"themeOf","subj":"T2527","obj":"T2524"},{"id":"R1939","pred":"themeOf","subj":"T2527","obj":"T2525"}],"attributes":[{"id":"M11","pred":"Negation","subj":"T2519","obj":"true"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2602","span":{"begin":46,"end":49},"obj":"Protein"},{"id":"T2603","span":{"begin":96,"end":99},"obj":"Protein"},{"id":"T2604","span":{"begin":101,"end":133},"obj":"Protein"},{"id":"T2605","span":{"begin":135,"end":139},"obj":"Protein"},{"id":"T2606","span":{"begin":188,"end":193},"obj":"Protein"},{"id":"T2607","span":{"begin":267,"end":271},"obj":"Protein"},{"id":"T2608","span":{"begin":276,"end":280},"obj":"Protein"},{"id":"T2609","span":{"begin":317,"end":321},"obj":"Protein"},{"id":"T2610","span":{"begin":85,"end":94},"obj":"Regulation"},{"id":"T2611","span":{"begin":85,"end":94},"obj":"Regulation"},{"id":"T2612","span":{"begin":85,"end":94},"obj":"Regulation"},{"id":"T2613","span":{"begin":141,"end":156},"obj":"Phosphorylation"},{"id":"T2614","span":{"begin":141,"end":156},"obj":"Phosphorylation"},{"id":"T2615","span":{"begin":141,"end":156},"obj":"Phosphorylation"},{"id":"T2616","span":{"begin":141,"end":156},"obj":"Phosphorylation"},{"id":"T2617","span":{"begin":158,"end":164},"obj":"Positive_regulation"},{"id":"T2618","span":{"begin":158,"end":164},"obj":"Positive_regulation"},{"id":"T2619","span":{"begin":158,"end":164},"obj":"Positive_regulation"},{"id":"T2620","span":{"begin":158,"end":164},"obj":"Positive_regulation"},{"id":"T2621","span":{"begin":178,"end":187},"obj":"Gene_expression"},{"id":"T2622","span":{"begin":178,"end":187},"obj":"Gene_expression"},{"id":"T2623","span":{"begin":281,"end":291},"obj":"Positive_regulation"},{"id":"T2624","span":{"begin":281,"end":291},"obj":"Positive_regulation"},{"id":"T2625","span":{"begin":281,"end":291},"obj":"Positive_regulation"},{"id":"T2626","span":{"begin":322,"end":331},"obj":"Localization"},{"id":"T2627","span":{"begin":85,"end":94},"obj":"Regulation"},{"id":"T2628","span":{"begin":85,"end":94},"obj":"Regulation"},{"id":"T2629","span":{"begin":85,"end":94},"obj":"Regulation"},{"id":"T2630","span":{"begin":85,"end":94},"obj":"Regulation"},{"id":"T2631","span":{"begin":158,"end":164},"obj":"Positive_regulation"},{"id":"T2632","span":{"begin":158,"end":164},"obj":"Positive_regulation"}],"relations":[{"id":"R1968","pred":"themeOf","subj":"T2602","obj":"T2613"},{"id":"R1970","pred":"themeOf","subj":"T2603","obj":"T2610"},{"id":"R1971","pred":"themeOf","subj":"T2603","obj":"T2614"},{"id":"R1972","pred":"themeOf","subj":"T2604","obj":"T2611"},{"id":"R1973","pred":"themeOf","subj":"T2604","obj":"T2615"},{"id":"R1974","pred":"themeOf","subj":"T2605","obj":"T2612"},{"id":"R1975","pred":"themeOf","subj":"T2605","obj":"T2616"},{"id":"R1977","pred":"themeOf","subj":"T2606","obj":"T2621"},{"id":"R1979","pred":"themeOf","subj":"T2607","obj":"T2622"},{"id":"R1980","pred":"themeOf","subj":"T2608","obj":"T2623"},{"id":"R1982","pred":"themeOf","subj":"T2609","obj":"T2626"},{"id":"R1983","pred":"themeOf","subj":"T2613","obj":"T2617"},{"id":"R1984","pred":"themeOf","subj":"T2613","obj":"T2627"},{"id":"R1985","pred":"themeOf","subj":"T2614","obj":"T2618"},{"id":"R1986","pred":"themeOf","subj":"T2614","obj":"T2628"},{"id":"R1987","pred":"themeOf","subj":"T2615","obj":"T2619"},{"id":"R1988","pred":"themeOf","subj":"T2615","obj":"T2629"},{"id":"R1989","pred":"themeOf","subj":"T2616","obj":"T2620"},{"id":"R1990","pred":"themeOf","subj":"T2616","obj":"T2630"},{"id":"R1991","pred":"themeOf","subj":"T2621","obj":"T2624"},{"id":"R1992","pred":"themeOf","subj":"T2621","obj":"T2631"},{"id":"R1993","pred":"themeOf","subj":"T2622","obj":"T2625"},{"id":"R1994","pred":"themeOf","subj":"T2622","obj":"T2632"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}

    test2

    {"project":"test2","denotations":[{"id":"T977","span":{"begin":178,"end":187},"obj":"Gene_expression"},{"id":"T978","span":{"begin":188,"end":193},"obj":"Protein"},{"id":"T979","span":{"begin":201,"end":206},"obj":"Protein"},{"id":"T980","span":{"begin":267,"end":271},"obj":"Protein"},{"id":"T981","span":{"begin":276,"end":280},"obj":"Protein"},{"id":"T982","span":{"begin":281,"end":291},"obj":"Positive_regulation"},{"id":"T983","span":{"begin":317,"end":321},"obj":"Protein"},{"id":"T984","span":{"begin":322,"end":331},"obj":"Gene_expression"}],"relations":[{"id":"R720","pred":"themeOf","subj":"T978","obj":"T977"},{"id":"R721","pred":"themeOf","subj":"T980","obj":"T982"},{"id":"R722","pred":"themeOf","subj":"T980","obj":"T984"},{"id":"R723","pred":"themeOf","subj":"T981","obj":"T982"},{"id":"R724","pred":"themeOf","subj":"T983","obj":"T984"}],"text":"Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005)."}