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PMC:2791889 / 4348-4770 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1171 101-133 P28482 denotes mitogen-activated protein kinase
T1172 101-133 P27361 denotes mitogen-activated protein kinase
T1173 188-193 P01579 denotes IFN-γ
T1174 201-206 P29459 denotes IL-12
T1175 201-206 P29460 denotes IL-12
T1176 267-271 P27361 denotes ERK1
T1177 276-280 P28482 denotes ERK2
T1178 317-321 P05112 denotes IL-4

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T1078 158-164 Positive_regulation denotes result
T1079 178-187 Gene_expression denotes producing
T1080 188-193 Protein denotes IFN-γ
T1081 201-206 Protein denotes IL-12
T1082 207-218 Regulation denotes independent true
T1083 267-271 Protein denotes ERK1
T1084 276-280 Protein denotes ERK2
T1085 281-291 Positive_regulation denotes activation
T1086 281-291 Positive_regulation denotes activation
T1087 293-298 Positive_regulation denotes favor
T1088 293-298 Positive_regulation denotes favor
T1089 317-321 Protein denotes IL-4
T1090 322-331 Localization denotes secretion
R785 T1079 T1078 themeOf producing,result
R786 T1079 T1082 themeOf producing,independent
R787 T1080 T1079 themeOf IFN-γ,producing
R788 T1081 T1082 causeOf IL-12,independent
R789 T1083 T1086 themeOf ERK1,activation
R790 T1084 T1085 themeOf ERK2,activation
R791 T1085 T1088 causeOf activation,favor
R792 T1086 T1087 causeOf activation,favor
R793 T1089 T1090 themeOf IL-4,secretion
R794 T1090 T1087 themeOf secretion,favor
R795 T1090 T1088 themeOf secretion,favor

2_test

Id Subject Object Predicate Lexical cue
19646904-7595230-46582682 416-420 7595230 denotes 2005
19646904-7595228-46582682 416-420 7595228 denotes 2005
19646904-12594266-46582682 416-420 12594266 denotes 2005
19646904-16172258-46582682 416-420 16172258 denotes 2005
T93907 416-420 7595230 denotes 2005
T87974 416-420 7595228 denotes 2005
T12507 416-420 12594266 denotes 2005
T81044 416-420 16172258 denotes 2005

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1844 0-7 IN denotes Whereas
T1845 8-12 JJ denotes high
T1846 13-18 NNS denotes doses
T1847 19-21 IN denotes of
T1848 22-29 NN denotes antigen
T1849 29-30 , denotes ,
T1850 31-35 IN denotes with
T1851 36-45 VBN denotes sustained
T1852 46-49 NNP denotes TCR
T1853 50-59 VBG denotes signaling
T1854 60-63 CC denotes and
T1855 64-84 JJ denotes extracellular-signal
T1856 85-94 VBN denotes regulated
T1857 95-96 -LRB- denotes (
T1858 96-99 NNP denotes ERK
T1859 99-100 -RRB- denotes )
T1860 101-118 JJ denotes mitogen-activated
T1861 119-126 NN denotes protein
T1862 127-133 NN denotes kinase
T1863 134-135 -LRB- denotes (
T1864 135-139 NNP denotes MAPK
T1865 139-140 -RRB- denotes )
T1866 141-156 NN denotes phosphorylation
T1867 156-157 , denotes ,
T1868 158-164 NN denotes result
T1869 165-167 IN denotes in
T1870 168-171 JJ denotes Th1
T1871 172-177 NNS denotes cells
T1872 178-187 VBG denotes producing
T1873 188-193 JJ denotes IFN-γ
T1874 194-197 IN denotes via
T1875 198-200 DT denotes an
T1876 201-218 JJ denotes IL-12-independent
T1877 219-228 NN denotes mechanism
T1878 228-229 , denotes ,
T1879 230-233 JJ denotes low
T1880 234-239 NNS denotes doses
T1881 240-242 IN denotes of
T1882 243-250 NN denotes antigen
T1883 250-251 , denotes ,
T1884 252-256 IN denotes with
T1885 257-266 NN denotes transient
T1886 267-271 CD denotes ERK1
T1887 272-275 CC denotes and
T1888 276-280 CD denotes ERK2
T1889 281-291 NN denotes activation
T1890 291-292 , denotes ,
T1891 293-298 VBP denotes favor
T1892 299-302 JJ denotes Th2
T1893 303-312 NNS denotes responses
T1894 313-316 CC denotes and
T1895 317-321 NN denotes IL-4
T1896 322-331 NN denotes secretion
T1897 332-333 -LRB- denotes (
T1898 333-341 JJ denotes Constant
T1899 342-344 FW denotes et
T1900 345-348 FW denotes al.
T1901 348-349 , denotes ,
T1902 350-354 CD denotes 1995
T1903 354-355 : denotes ;
T1904 356-362 NNP denotes Hosken
T1905 363-365 FW denotes et
T1906 366-369 FW denotes al.
T1907 369-370 , denotes ,
T1908 371-375 CD denotes 1995
T1909 375-376 : denotes ;
T1910 377-386 NNP denotes Jorritsma
T1911 387-389 FW denotes et
T1912 390-393 FW denotes al.
T1913 393-394 , denotes ,
T1914 395-399 CD denotes 2003
T1915 399-400 : denotes ;
T1916 401-407 NNP denotes Yamane
T1917 408-410 FW denotes et
T1918 411-414 FW denotes al.
T1919 414-415 , denotes ,
T1920 416-420 CD denotes 2005
T1921 420-421 -RRB- denotes )
T1922 421-422 . denotes .
R1446 T1844 T1868 mark Whereas,result
R1447 T1845 T1846 amod high,doses
R1448 T1846 T1868 nsubj doses,result
R1450 T1847 T1846 prep of,doses
R1451 T1848 T1847 pobj antigen,of
R1453 T1849 T1868 punct ",",result
R1454 T1850 T1868 prep with,result
R1455 T1851 T1853 amod sustained,signaling
R1457 T1852 T1853 compound TCR,signaling
R1458 T1853 T1850 pobj signaling,with
R1460 T1854 T1853 cc and,signaling
R1461 T1855 T1853 conj extracellular-signal,signaling
R1465 T1856 T1855 acl regulated,extracellular-signal
R1467 T1857 T1855 punct (,extracellular-signal
R1469 T1858 T1855 appos ERK,extracellular-signal
R1471 T1859 T1855 punct ),extracellular-signal
R1472 T1860 T1861 amod mitogen-activated,protein
R1474 T1861 T1868 nsubj protein,result
R1475 T1862 T1861 amod kinase,protein
R1476 T1863 T1864 punct (,MAPK
R1478 T1864 T1862 appos MAPK,kinase
R1479 T1865 T1864 punct ),MAPK
R1480 T1866 T1862 conj phosphorylation,kinase
R1482 T1867 T1866 punct ",",phosphorylation
R1483 T1868 T1891 advcl result,favor
R1484 T1869 T1868 prep in,result
R1485 T1870 T1871 amod Th1,cells
R1486 T1871 T1869 pobj cells,in
R1487 T1872 T1871 acl producing,cells
R1489 T1873 T1872 dobj IFN-γ,producing
R1490 T1874 T1868 prep via,result
R1491 T1875 T1877 det an,mechanism
R1493 T1876 T1877 compound IL-12-independent,mechanism
R1494 T1877 T1874 pobj mechanism,via
R1495 T1878 T1877 punct ",",mechanism
R1496 T1879 T1880 amod low,doses
R1498 T1880 T1877 conj doses,mechanism
R1499 T1881 T1880 prep of,doses
R1500 T1882 T1881 pobj antigen,of
R1502 T1883 T1868 punct ",",result
R1503 T1884 T1868 prep with,result
R1504 T1885 T1891 nmod transient,favor
R1506 T1886 T1885 nummod ERK1,transient
R1507 T1887 T1885 cc and,transient
R1508 T1888 T1889 nummod ERK2,activation
R1509 T1922 T1918 punct .,al.
R1510 T1889 T1885 conj activation,transient
R1511 T1890 T1891 punct ",",favor
R1512 T1891 T1918 ccomp favor,al.
R1514 T1892 T1893 amod Th2,responses
R1515 T1893 T1891 dobj responses,favor
R1518 T1894 T1893 cc and,responses
R1519 T1895 T1896 compound IL-4,secretion
R1521 T1896 T1893 conj secretion,responses
R1522 T1897 T1912 punct (,al.
R1525 T1898 T1900 amod Constant,al.
R1528 T1899 T1900 nmod et,al.
R1529 T1900 T1912 ccomp al.,al.
R1530 T1901 T1900 punct ",",al.
R1531 T1902 T1900 npadvmod 1995,al.
R1532 T1903 T1912 punct ;,al.
R1533 T1904 T1906 compound Hosken,al.
R1534 T1905 T1906 compound et,al.
R1536 T1906 T1912 ccomp al.,al.
R1537 T1907 T1906 punct ",",al.
R1538 T1908 T1906 npadvmod 1995,al.
R1540 T1909 T1912 punct ;,al.
R1541 T1910 T1912 compound Jorritsma,al.
R1542 T1911 T1912 compound et,al.
R1543 T1912 T1896 parataxis al.,secretion
R1545 T1913 T1912 punct ",",al.
R1546 T1914 T1912 npadvmod 2003,al.
R1547 T1915 T1918 punct ;,al.
R1549 T1916 T1918 compound Yamane,al.
R1550 T1917 T1918 compound et,al.
R1551 T1918 T1918 ROOT al.,al.
R1553 T1919 T1918 punct ",",al.
R1554 T1920 T1918 npadvmod 2005,al.
R1555 T1921 T1918 punct ),al.

GO-BP

Id Subject Object Predicate Lexical cue
T2137 46-49 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR
T2173 96-99 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK
T2174 135-139 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK
T2175 267-271 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T2177 276-280 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK2
T2180 109-133 http://purl.obolibrary.org/obo/GO_0034199 denotes activated protein kinase
T2181 109-133 http://purl.obolibrary.org/obo/GO_0032147 denotes activated protein kinase
T2182 109-133 http://purl.obolibrary.org/obo/GO_0030295 denotes activated protein kinase
T2183 109-133 http://purl.obolibrary.org/obo/GO_0032111 denotes activated protein kinase
T2184 141-156 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T2186 267-291 http://purl.obolibrary.org/obo/GO_0070374 denotes ERK1 and ERK2 activation
T2187 303-321 http://purl.obolibrary.org/obo/GO_0071353 denotes responses and IL-4
T2188 303-321 http://purl.obolibrary.org/obo/GO_0070670 denotes responses and IL-4
T2189 317-331 http://purl.obolibrary.org/obo/GO_0072602 denotes IL-4 secretion
T2190 322-331 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T2157 50-59 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-MF

Id Subject Object Predicate Lexical cue
T2206 201-206 http://purl.obolibrary.org/obo/GO_0005143 denotes IL-12
T2211 317-321 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4
T2217 96-99 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK
T2218 135-139 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK
T2219 267-271 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T2221 276-280 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK2
T2224 109-133 http://purl.obolibrary.org/obo/GO_0030295 denotes activated protein kinase

GO-CC

Id Subject Object Predicate Lexical cue
T2242 46-49 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR
T2246 64-77 http://purl.obolibrary.org/obo/GO_0005576 denotes extracellular

sentences

Id Subject Object Predicate Lexical cue
T1128 0-422 Sentence denotes Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005).
T24 0-422 Sentence denotes Whereas high doses of antigen, with sustained TCR signaling and extracellular-signal regulated (ERK) mitogen-activated protein kinase (MAPK) phosphorylation, result in Th1 cells producing IFN-γ via an IL-12-independent mechanism, low doses of antigen, with transient ERK1 and ERK2 activation, favor Th2 responses and IL-4 secretion (Constant et al., 1995; Hosken et al., 1995; Jorritsma et al., 2003; Yamane et al., 2005).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T2515 158-164 Positive_regulation denotes result
T2516 178-187 Gene_expression denotes producing
T2517 188-193 Protein denotes IFN-γ
T2518 201-206 Protein denotes IL-12
T2519 207-218 Regulation denotes independent true
T2520 267-271 Protein denotes ERK1
T2521 276-280 Protein denotes ERK2
T2522 281-291 Positive_regulation denotes activation
T2523 281-291 Positive_regulation denotes activation
T2524 293-298 Positive_regulation denotes favor
T2525 293-298 Positive_regulation denotes favor
T2526 317-321 Protein denotes IL-4
T2527 322-331 Localization denotes secretion
R1925 T2516 T2515 themeOf producing,result
R1926 T2516 T2519 themeOf producing,independent
R1927 T2517 T2516 themeOf IFN-γ,producing
R1928 T2518 T2519 causeOf IL-12,independent
R1929 T2520 T2523 themeOf ERK1,activation
R1930 T2521 T2522 themeOf ERK2,activation
R1932 T2522 T2525 causeOf activation,favor
R1933 T2523 T2524 causeOf activation,favor
R1936 T2526 T2527 themeOf IL-4,secretion
R1938 T2527 T2524 themeOf secretion,favor
R1939 T2527 T2525 themeOf secretion,favor

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2602 46-49 Protein denotes TCR
T2603 96-99 Protein denotes ERK
T2604 101-133 Protein denotes mitogen-activated protein kinase
T2605 135-139 Protein denotes MAPK
T2606 188-193 Protein denotes IFN-γ
T2607 267-271 Protein denotes ERK1
T2608 276-280 Protein denotes ERK2
T2609 317-321 Protein denotes IL-4
T2610 85-94 Regulation denotes regulated
T2611 85-94 Regulation denotes regulated
T2612 85-94 Regulation denotes regulated
T2613 141-156 Phosphorylation denotes phosphorylation
T2614 141-156 Phosphorylation denotes phosphorylation
T2615 141-156 Phosphorylation denotes phosphorylation
T2616 141-156 Phosphorylation denotes phosphorylation
T2617 158-164 Positive_regulation denotes result
T2618 158-164 Positive_regulation denotes result
T2619 158-164 Positive_regulation denotes result
T2620 158-164 Positive_regulation denotes result
T2621 178-187 Gene_expression denotes producing
T2622 178-187 Gene_expression denotes producing
T2623 281-291 Positive_regulation denotes activation
T2624 281-291 Positive_regulation denotes activation
T2625 281-291 Positive_regulation denotes activation
T2626 322-331 Localization denotes secretion
T2627 85-94 Regulation denotes regulated
T2628 85-94 Regulation denotes regulated
T2629 85-94 Regulation denotes regulated
T2630 85-94 Regulation denotes regulated
T2631 158-164 Positive_regulation denotes result
T2632 158-164 Positive_regulation denotes result
R1968 T2602 T2613 themeOf TCR,phosphorylation
R1970 T2603 T2610 themeOf ERK,regulated
R1971 T2603 T2614 themeOf ERK,phosphorylation
R1972 T2604 T2611 themeOf mitogen-activated protein kinase,regulated
R1973 T2604 T2615 themeOf mitogen-activated protein kinase,phosphorylation
R1974 T2605 T2612 themeOf MAPK,regulated
R1975 T2605 T2616 themeOf MAPK,phosphorylation
R1977 T2606 T2621 themeOf IFN-γ,producing
R1979 T2607 T2622 themeOf ERK1,producing
R1980 T2608 T2623 themeOf ERK2,activation
R1982 T2609 T2626 themeOf IL-4,secretion
R1983 T2613 T2617 themeOf phosphorylation,result
R1984 T2613 T2627 themeOf phosphorylation,regulated
R1985 T2614 T2618 themeOf phosphorylation,result
R1986 T2614 T2628 themeOf phosphorylation,regulated
R1987 T2615 T2619 themeOf phosphorylation,result
R1988 T2615 T2629 themeOf phosphorylation,regulated
R1989 T2616 T2620 themeOf phosphorylation,result
R1990 T2616 T2630 themeOf phosphorylation,regulated
R1991 T2621 T2624 themeOf producing,activation
R1992 T2621 T2631 themeOf producing,result
R1993 T2622 T2625 themeOf producing,activation
R1994 T2622 T2632 themeOf producing,result

test2

Id Subject Object Predicate Lexical cue
T977 178-187 Gene_expression denotes producing
T978 188-193 Protein denotes IFN-γ
T979 201-206 Protein denotes IL-12
T980 267-271 Protein denotes ERK1
T981 276-280 Protein denotes ERK2
T982 281-291 Positive_regulation denotes activation
T983 317-321 Protein denotes IL-4
T984 322-331 Gene_expression denotes secretion
R720 T978 T977 themeOf IFN-γ,producing
R721 T980 T982 themeOf ERK1,activation
R722 T980 T984 themeOf ERK1,secretion
R723 T981 T982 themeOf ERK2,activation
R724 T983 T984 themeOf IL-4,secretion