PMC:2791889 / 35048-35237 JSONTXT

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    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T20626","span":{"begin":145,"end":154},"obj":"Protein"},{"id":"T20627","span":{"begin":158,"end":162},"obj":"Protein"},{"id":"T20628","span":{"begin":163,"end":174},"obj":"Transcription"},{"id":"T20629","span":{"begin":163,"end":174},"obj":"Transcription"}],"relations":[{"id":"R16339","pred":"themeOf","subj":"T20626","obj":"T20628"},{"id":"R16340","pred":"themeOf","subj":"T20627","obj":"T20629"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T20693","span":{"begin":0,"end":6},"obj":"NN"},{"id":"T20694","span":{"begin":7,"end":11},"obj":"NN"},{"id":"T20695","span":{"begin":12,"end":16},"obj":"NN"},{"id":"T20696","span":{"begin":17,"end":27},"obj":"NN"},{"id":"T20697","span":{"begin":28,"end":31},"obj":"VB"},{"id":"T20698","span":{"begin":32,"end":42},"obj":"VB"},{"id":"T20699","span":{"begin":43,"end":49},"obj":"CC"},{"id":"T20700","span":{"begin":50,"end":54},"obj":"IN"},{"id":"T20701","span":{"begin":55,"end":59},"obj":"NN"},{"id":"T20702","span":{"begin":60,"end":65},"obj":"NNP"},{"id":"T20703","span":{"begin":66,"end":67},"obj":"-LRB-"},{"id":"T20704","span":{"begin":67,"end":74},"obj":"NNP"},{"id":"T20705","span":{"begin":75,"end":85},"obj":"NNP"},{"id":"T20706","span":{"begin":85,"end":86},"obj":"-RRB-"},{"id":"T20707","span":{"begin":87,"end":89},"obj":"CC"},{"id":"T20708","span":{"begin":90,"end":94},"obj":"IN"},{"id":"T20709","span":{"begin":95,"end":101},"obj":"NNP"},{"id":"T20710","span":{"begin":102,"end":105},"obj":"NNP"},{"id":"T20711","span":{"begin":106,"end":107},"obj":"-LRB-"},{"id":"T20712","span":{"begin":107,"end":114},"obj":"NNP"},{"id":"T20713","span":{"begin":115,"end":125},"obj":"NNP"},{"id":"T20714","span":{"begin":125,"end":126},"obj":"-RRB-"},{"id":"T20715","span":{"begin":127,"end":130},"obj":"CC"},{"id":"T20716","span":{"begin":131,"end":141},"obj":"VB"},{"id":"T20717","span":{"begin":142,"end":144},"obj":"TO"},{"id":"T20718","span":{"begin":145,"end":154},"obj":"NN"},{"id":"T20719","span":{"begin":155,"end":157},"obj":"CC"},{"id":"T20720","span":{"begin":158,"end":162},"obj":"NN"},{"id":"T20721","span":{"begin":163,"end":167},"obj":"NN"},{"id":"T20722","span":{"begin":168,"end":174},"obj":"NN"},{"id":"T20723","span":{"begin":174,"end":175},"obj":"-COMMA-"},{"id":"T20724","span":{"begin":176,"end":188},"obj":"RB"}],"relations":[{"id":"R16402","pred":"arg1Of","subj":"T20696","obj":"T20693"},{"id":"R16403","pred":"arg1Of","subj":"T20696","obj":"T20694"},{"id":"R16404","pred":"arg1Of","subj":"T20696","obj":"T20695"},{"id":"R16405","pred":"arg1Of","subj":"T20696","obj":"T20697"},{"id":"R16406","pred":"arg2Of","subj":"T20696","obj":"T20698"},{"id":"R16407","pred":"arg1Of","subj":"T20696","obj":"T20716"},{"id":"R16408","pred":"arg2Of","subj":"T20698","obj":"T20697"},{"id":"R16409","pred":"arg1Of","subj":"T20698","obj":"T20700"},{"id":"R16410","pred":"arg1Of","subj":"T20698","obj":"T20708"},{"id":"R16411","pred":"arg1Of","subj":"T20698","obj":"T20715"},{"id":"R16412","pred":"arg1Of","subj":"T20700","obj":"T20699"},{"id":"R16413","pred":"arg1Of","subj":"T20700","obj":"T20707"},{"id":"R16414","pred":"arg2Of","subj":"T20702","obj":"T20700"},{"id":"R16415","pred":"arg1Of","subj":"T20702","obj":"T20701"},{"id":"R16416","pred":"arg1Of","subj":"T20702","obj":"T20703"},{"id":"R16417","pred":"arg2Of","subj":"T20705","obj":"T20703"},{"id":"R16418","pred":"arg1Of","subj":"T20705","obj":"T20704"},{"id":"R16419","pred":"arg3Of","subj":"T20706","obj":"T20703"},{"id":"R16420","pred":"arg2Of","subj":"T20708","obj":"T20707"},{"id":"R16421","pred":"arg2Of","subj":"T20710","obj":"T20708"},{"id":"R16422","pred":"arg1Of","subj":"T20710","obj":"T20709"},{"id":"R16423","pred":"arg1Of","subj":"T20710","obj":"T20711"},{"id":"R16424","pred":"arg2Of","subj":"T20713","obj":"T20711"},{"id":"R16425","pred":"arg1Of","subj":"T20713","obj":"T20712"},{"id":"R16426","pred":"arg3Of","subj":"T20714","obj":"T20711"},{"id":"R16427","pred":"arg2Of","subj":"T20716","obj":"T20715"},{"id":"R16428","pred":"arg1Of","subj":"T20716","obj":"T20717"},{"id":"R16429","pred":"arg1Of","subj":"T20716","obj":"T20723"},{"id":"R16430","pred":"arg1Of","subj":"T20716","obj":"T20724"},{"id":"R16431","pred":"arg1Of","subj":"T20718","obj":"T20719"},{"id":"R16432","pred":"arg2Of","subj":"T20720","obj":"T20719"},{"id":"R16433","pred":"arg2Of","subj":"T20722","obj":"T20717"},{"id":"R16434","pred":"arg1Of","subj":"T20722","obj":"T20718"},{"id":"R16435","pred":"arg1Of","subj":"T20722","obj":"T20720"},{"id":"R16436","pred":"arg1Of","subj":"T20722","obj":"T20721"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T20796","span":{"begin":0,"end":6},"obj":"NN"},{"id":"T20797","span":{"begin":7,"end":11},"obj":"NN"},{"id":"T20798","span":{"begin":12,"end":16},"obj":"NNP"},{"id":"T20799","span":{"begin":17,"end":27},"obj":"NN"},{"id":"T20800","span":{"begin":28,"end":31},"obj":"VBD"},{"id":"T20801","span":{"begin":32,"end":42},"obj":"VBN"},{"id":"T20802","span":{"begin":43,"end":49},"obj":"RB"},{"id":"T20803","span":{"begin":50,"end":54},"obj":"IN"},{"id":"T20804","span":{"begin":55,"end":59},"obj":"NNP"},{"id":"T20805","span":{"begin":60,"end":65},"obj":"NNP"},{"id":"T20806","span":{"begin":66,"end":67},"obj":"-LRB-"},{"id":"T20807","span":{"begin":67,"end":74},"obj":"NNP"},{"id":"T20808","span":{"begin":75,"end":85},"obj":"NNPS"},{"id":"T20809","span":{"begin":85,"end":86},"obj":"-RRB-"},{"id":"T20810","span":{"begin":87,"end":89},"obj":"CC"},{"id":"T20811","span":{"begin":90,"end":94},"obj":"IN"},{"id":"T20812","span":{"begin":95,"end":101},"obj":"NNP"},{"id":"T20813","span":{"begin":102,"end":105},"obj":"NNP"},{"id":"T20814","span":{"begin":106,"end":107},"obj":"-LRB-"},{"id":"T20815","span":{"begin":107,"end":114},"obj":"NNP"},{"id":"T20816","span":{"begin":115,"end":125},"obj":"NNPS"},{"id":"T20817","span":{"begin":125,"end":126},"obj":"-RRB-"},{"id":"T20818","span":{"begin":127,"end":130},"obj":"CC"},{"id":"T20819","span":{"begin":131,"end":141},"obj":"VBN"},{"id":"T20820","span":{"begin":142,"end":144},"obj":"TO"},{"id":"T20821","span":{"begin":145,"end":154},"obj":"VB"},{"id":"T20822","span":{"begin":155,"end":157},"obj":"CC"},{"id":"T20823","span":{"begin":158,"end":162},"obj":"NNP"},{"id":"T20824","span":{"begin":163,"end":167},"obj":"NNP"},{"id":"T20825","span":{"begin":168,"end":174},"obj":"NNS"},{"id":"T20826","span":{"begin":174,"end":175},"obj":","},{"id":"T20827","span":{"begin":176,"end":188},"obj":"RB"},{"id":"T20828","span":{"begin":188,"end":189},"obj":"."}],"relations":[{"id":"R16503","pred":"compound","subj":"T20796","obj":"T20797"},{"id":"R16504","pred":"compound","subj":"T20797","obj":"T20799"},{"id":"R16505","pred":"compound","subj":"T20798","obj":"T20799"},{"id":"R16506","pred":"nsubjpass","subj":"T20799","obj":"T20801"},{"id":"R16507","pred":"auxpass","subj":"T20800","obj":"T20801"},{"id":"R16508","pred":"ROOT","subj":"T20801","obj":"T20801"},{"id":"R16509","pred":"advmod","subj":"T20802","obj":"T20801"},{"id":"R16510","pred":"prep","subj":"T20803","obj":"T20801"},{"id":"R16511","pred":"compound","subj":"T20804","obj":"T20805"},{"id":"R16512","pred":"pobj","subj":"T20805","obj":"T20803"},{"id":"R16513","pred":"punct","subj":"T20806","obj":"T20808"},{"id":"R16514","pred":"compound","subj":"T20807","obj":"T20808"},{"id":"R16515","pred":"parataxis","subj":"T20808","obj":"T20805"},{"id":"R16516","pred":"punct","subj":"T20809","obj":"T20808"},{"id":"R16517","pred":"cc","subj":"T20810","obj":"T20803"},{"id":"R16518","pred":"conj","subj":"T20811","obj":"T20803"},{"id":"R16519","pred":"compound","subj":"T20812","obj":"T20813"},{"id":"R16520","pred":"pobj","subj":"T20813","obj":"T20811"},{"id":"R16521","pred":"punct","subj":"T20814","obj":"T20813"},{"id":"R16522","pred":"compound","subj":"T20815","obj":"T20816"},{"id":"R16523","pred":"appos","subj":"T20816","obj":"T20813"},{"id":"R16524","pred":"punct","subj":"T20817","obj":"T20816"},{"id":"R16525","pred":"cc","subj":"T20818","obj":"T20811"},{"id":"R16526","pred":"conj","subj":"T20819","obj":"T20811"},{"id":"R16527","pred":"aux","subj":"T20820","obj":"T20821"},{"id":"R16528","pred":"advcl","subj":"T20821","obj":"T20819"},{"id":"R16529","pred":"cc","subj":"T20822","obj":"T20819"},{"id":"R16530","pred":"compound","subj":"T20823","obj":"T20825"},{"id":"R16531","pred":"compound","subj":"T20824","obj":"T20825"},{"id":"R16532","pred":"conj","subj":"T20825","obj":"T20819"},{"id":"R16533","pred":"punct","subj":"T20826","obj":"T20819"},{"id":"R16534","pred":"advmod","subj":"T20827","obj":"T20819"},{"id":"R16535","pred":"punct","subj":"T20828","obj":"T20801"}],"text":"Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T20835","span":{"begin":158,"end":162},"obj":"http://purl.obolibrary.org/obo/GO_0004422"}],"text":"Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T20837","span":{"begin":145,"end":154},"obj":"http://purl.obolibrary.org/obo/GO_0031386"},{"id":"T20838","span":{"begin":158,"end":162},"obj":"http://purl.obolibrary.org/obo/GO_0004422"}],"text":"Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively."}

    sentences

    {"project":"sentences","denotations":[{"id":"T20633","span":{"begin":0,"end":189},"obj":"Sentence"},{"id":"T189","span":{"begin":0,"end":189},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T20853","span":{"begin":145,"end":154},"obj":"Protein"},{"id":"T20854","span":{"begin":158,"end":162},"obj":"Protein"},{"id":"T20855","span":{"begin":163,"end":174},"obj":"Transcription"},{"id":"T20856","span":{"begin":163,"end":174},"obj":"Transcription"}],"relations":[{"id":"R16540","pred":"themeOf","subj":"T20853","obj":"T20855"},{"id":"R16541","pred":"themeOf","subj":"T20854","obj":"T20856"}],"text":"Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T20857","span":{"begin":145,"end":154},"obj":"Protein"},{"id":"T20858","span":{"begin":158,"end":167},"obj":"Protein"}],"text":"Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively."}

    test2

    {"project":"test2","denotations":[{"id":"T20622","span":{"begin":145,"end":154},"obj":"Protein"},{"id":"T20623","span":{"begin":158,"end":162},"obj":"Protein"}],"text":"Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively."}