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PMC:2791889 / 35048-35237 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T20626 145-154 Protein denotes ubiquitin
T20627 158-162 Protein denotes HPRT
T20628 163-174 Transcription denotes mRNA levels
T20629 163-174 Transcription denotes mRNA levels
R16339 T20626 T20628 themeOf ubiquitin,mRNA levels
R16340 T20627 T20629 themeOf HPRT,mRNA levels

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20693 0-6 NN denotes Target
T20694 7-11 NN denotes gene
T20695 12-16 NN denotes mRNA
T20696 17-27 NN denotes expression
T20697 28-31 VB denotes was
T20698 32-42 VB denotes quantified
T20699 43-49 CC denotes either
T20700 50-54 IN denotes with
T20701 55-59 NN denotes SYBR
T20702 60-65 NNP denotes Green
T20703 66-67 -LRB- denotes (
T20704 67-74 NNP denotes Applied
T20705 75-85 NNP denotes Biosystems
T20706 85-86 -RRB- denotes )
T20707 87-89 CC denotes or
T20708 90-94 IN denotes with
T20709 95-101 NNP denotes Master
T20710 102-105 NNP denotes Mix
T20711 106-107 -LRB- denotes (
T20712 107-114 NNP denotes Applied
T20713 115-125 NNP denotes Biosystems
T20714 125-126 -RRB- denotes )
T20715 127-130 CC denotes and
T20716 131-141 VB denotes normalized
T20717 142-144 TO denotes to
T20718 145-154 NN denotes ubiquitin
T20719 155-157 CC denotes or
T20720 158-162 NN denotes HPRT
T20721 163-167 NN denotes mRNA
T20722 168-174 NN denotes levels
T20723 174-175 -COMMA- denotes ,
T20724 176-188 RB denotes respectively
R16402 T20696 T20693 arg1Of expression,Target
R16403 T20696 T20694 arg1Of expression,gene
R16404 T20696 T20695 arg1Of expression,mRNA
R16405 T20696 T20697 arg1Of expression,was
R16406 T20696 T20698 arg2Of expression,quantified
R16407 T20696 T20716 arg1Of expression,normalized
R16408 T20698 T20697 arg2Of quantified,was
R16409 T20698 T20700 arg1Of quantified,with
R16410 T20698 T20708 arg1Of quantified,with
R16411 T20698 T20715 arg1Of quantified,and
R16412 T20700 T20699 arg1Of with,either
R16413 T20700 T20707 arg1Of with,or
R16414 T20702 T20700 arg2Of Green,with
R16415 T20702 T20701 arg1Of Green,SYBR
R16416 T20702 T20703 arg1Of Green,(
R16417 T20705 T20703 arg2Of Biosystems,(
R16418 T20705 T20704 arg1Of Biosystems,Applied
R16419 T20706 T20703 arg3Of ),(
R16420 T20708 T20707 arg2Of with,or
R16421 T20710 T20708 arg2Of Mix,with
R16422 T20710 T20709 arg1Of Mix,Master
R16423 T20710 T20711 arg1Of Mix,(
R16424 T20713 T20711 arg2Of Biosystems,(
R16425 T20713 T20712 arg1Of Biosystems,Applied
R16426 T20714 T20711 arg3Of ),(
R16427 T20716 T20715 arg2Of normalized,and
R16428 T20716 T20717 arg1Of normalized,to
R16429 T20716 T20723 arg1Of normalized,","
R16430 T20716 T20724 arg1Of normalized,respectively
R16431 T20718 T20719 arg1Of ubiquitin,or
R16432 T20720 T20719 arg2Of HPRT,or
R16433 T20722 T20717 arg2Of levels,to
R16434 T20722 T20718 arg1Of levels,ubiquitin
R16435 T20722 T20720 arg1Of levels,HPRT
R16436 T20722 T20721 arg1Of levels,mRNA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20796 0-6 NN denotes Target
T20797 7-11 NN denotes gene
T20798 12-16 NNP denotes mRNA
T20799 17-27 NN denotes expression
T20800 28-31 VBD denotes was
T20801 32-42 VBN denotes quantified
T20802 43-49 RB denotes either
T20803 50-54 IN denotes with
T20804 55-59 NNP denotes SYBR
T20805 60-65 NNP denotes Green
T20806 66-67 -LRB- denotes (
T20807 67-74 NNP denotes Applied
T20808 75-85 NNPS denotes Biosystems
T20809 85-86 -RRB- denotes )
T20810 87-89 CC denotes or
T20811 90-94 IN denotes with
T20812 95-101 NNP denotes Master
T20813 102-105 NNP denotes Mix
T20814 106-107 -LRB- denotes (
T20815 107-114 NNP denotes Applied
T20816 115-125 NNPS denotes Biosystems
T20817 125-126 -RRB- denotes )
T20818 127-130 CC denotes and
T20819 131-141 VBN denotes normalized
T20820 142-144 TO denotes to
T20821 145-154 VB denotes ubiquitin
T20822 155-157 CC denotes or
T20823 158-162 NNP denotes HPRT
T20824 163-167 NNP denotes mRNA
T20825 168-174 NNS denotes levels
T20826 174-175 , denotes ,
T20827 176-188 RB denotes respectively
T20828 188-189 . denotes .
R16503 T20796 T20797 compound Target,gene
R16504 T20797 T20799 compound gene,expression
R16505 T20798 T20799 compound mRNA,expression
R16506 T20799 T20801 nsubjpass expression,quantified
R16507 T20800 T20801 auxpass was,quantified
R16508 T20801 T20801 ROOT quantified,quantified
R16509 T20802 T20801 advmod either,quantified
R16510 T20803 T20801 prep with,quantified
R16511 T20804 T20805 compound SYBR,Green
R16512 T20805 T20803 pobj Green,with
R16513 T20806 T20808 punct (,Biosystems
R16514 T20807 T20808 compound Applied,Biosystems
R16515 T20808 T20805 parataxis Biosystems,Green
R16516 T20809 T20808 punct ),Biosystems
R16517 T20810 T20803 cc or,with
R16518 T20811 T20803 conj with,with
R16519 T20812 T20813 compound Master,Mix
R16520 T20813 T20811 pobj Mix,with
R16521 T20814 T20813 punct (,Mix
R16522 T20815 T20816 compound Applied,Biosystems
R16523 T20816 T20813 appos Biosystems,Mix
R16524 T20817 T20816 punct ),Biosystems
R16525 T20818 T20811 cc and,with
R16526 T20819 T20811 conj normalized,with
R16527 T20820 T20821 aux to,ubiquitin
R16528 T20821 T20819 advcl ubiquitin,normalized
R16529 T20822 T20819 cc or,normalized
R16530 T20823 T20825 compound HPRT,levels
R16531 T20824 T20825 compound mRNA,levels
R16532 T20825 T20819 conj levels,normalized
R16533 T20826 T20819 punct ",",normalized
R16534 T20827 T20819 advmod respectively,normalized
R16535 T20828 T20801 punct .,quantified

GO-BP

Id Subject Object Predicate Lexical cue
T20835 158-162 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT

GO-MF

Id Subject Object Predicate Lexical cue
T20837 145-154 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T20838 158-162 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT

sentences

Id Subject Object Predicate Lexical cue
T20633 0-189 Sentence denotes Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively.
T189 0-189 Sentence denotes Target gene mRNA expression was quantified either with SYBR Green (Applied Biosystems) or with Master Mix (Applied Biosystems) and normalized to ubiquitin or HPRT mRNA levels, respectively.

events-check-again

Id Subject Object Predicate Lexical cue
T20853 145-154 Protein denotes ubiquitin
T20854 158-162 Protein denotes HPRT
T20855 163-174 Transcription denotes mRNA levels
T20856 163-174 Transcription denotes mRNA levels
R16540 T20853 T20855 themeOf ubiquitin,mRNA levels
R16541 T20854 T20856 themeOf HPRT,mRNA levels

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T20857 145-154 Protein denotes ubiquitin
T20858 158-167 Protein denotes HPRT mRNA

test2

Id Subject Object Predicate Lexical cue
T20622 145-154 Protein denotes ubiquitin
T20623 158-162 Protein denotes HPRT