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PMC:2791889 / 30615-31043 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18696 35-38 E2RVI8 denotes OVA
T18697 83-87 P05112 denotes IL-4
T18698 90-95 P01579 denotes IFN-γ
T18699 98-103 Q14765 denotes STAT4
T18700 110-115 P42226 denotes STAT6

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T18672 35-38 Protein denotes OVA
T18673 76-80 Protein denotes Rag1
T18674 83-87 Protein denotes IL-4
T18675 90-95 Protein denotes IFN-γ
T18676 98-103 Protein denotes STAT4
T18677 110-115 Protein denotes STAT6
T18678 116-125 Negative_regulation denotes deficient
T18679 116-125 Negative_regulation denotes deficient
T18680 116-125 Negative_regulation denotes deficient
T18681 116-125 Negative_regulation denotes deficient
T18682 116-125 Negative_regulation denotes deficient
R14799 T18673 T18681 themeOf Rag1,deficient
R14800 T18674 T18679 themeOf IL-4,deficient
R14801 T18675 T18678 themeOf IFN-γ,deficient
R14802 T18676 T18682 themeOf STAT4,deficient
R14803 T18677 T18680 themeOf STAT6,deficient

2_test

Id Subject Object Predicate Lexical cue
19646904-2125367-46582721 242-246 2125367 denotes 2006
19646904-9846495-46582721 242-246 9846495 denotes 2006
19646904-16517715-46582721 242-246 16517715 denotes 2006
T31648 242-246 2125367 denotes 2006
T44291 242-246 9846495 denotes 2006
T43212 242-246 16517715 denotes 2006

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18719 0-6 NNP denotes BALB/c
T18720 7-11 NNP denotes DO11
T18721 11-14 CD denotes .10
T18722 15-19 NNS denotes mice
T18723 20-30 JJ denotes transgenic
T18724 31-34 IN denotes for
T18725 35-47 JJ denotes OVA-specific
T18726 48-51 NNP denotes TCR
T18727 52-54 NNP denotes WT
T18728 55-57 CC denotes or
T18729 58-65 VBD denotes crossed
T18730 66-70 RP denotes back
T18731 71-75 IN denotes with
T18732 76-80 NNP denotes Rag1
T18733 80-81 : denotes -
T18734 81-82 , denotes ,
T18735 83-87 NN denotes IL-4
T18736 87-88 : denotes -
T18737 88-89 , denotes ,
T18738 90-95 NNP denotes IFN-γ
T18739 95-96 : denotes -
T18740 96-97 , denotes ,
T18741 98-103 NNP denotes STAT4
T18742 103-104 : denotes -
T18743 104-105 , denotes ,
T18744 106-109 CC denotes and
T18745 110-125 JJ denotes STAT6-deficient
T18746 126-130 NNS denotes mice
T18747 131-135 VBD denotes were
T18748 136-140 VBN denotes used
T18749 141-143 IN denotes as
T18750 144-145 DT denotes a
T18751 146-152 NN denotes source
T18752 153-155 IN denotes of
T18753 156-172 JJ denotes antigen-specific
T18754 173-174 NNP denotes T
T18755 175-180 NNS denotes cells
T18756 181-182 -LRB- denotes (
T18757 182-188 NNP denotes Murphy
T18758 189-191 FW denotes et
T18759 192-195 FW denotes al.
T18760 195-196 , denotes ,
T18761 197-201 CD denotes 1990
T18762 201-202 : denotes ;
T18763 203-209 NNP denotes Ouyang
T18764 210-212 FW denotes et
T18765 213-216 FW denotes al.
T18766 216-217 , denotes ,
T18767 218-222 CD denotes 1998
T18768 222-223 : denotes ;
T18769 224-233 NNP denotes Shoemaker
T18770 234-236 FW denotes et
T18771 237-240 FW denotes al.
T18772 240-241 , denotes ,
T18773 242-246 CD denotes 2006
T18774 246-247 -RRB- denotes )
T18775 248-251 CC denotes and
T18776 252-256 VBD denotes were
T18777 257-261 VBN denotes bred
T18778 262-265 CC denotes and
T18779 266-276 VBN denotes maintained
T18780 277-282 IN denotes under
T18781 283-286 NNP denotes SPF
T18782 287-297 NNS denotes conditions
T18783 298-300 IN denotes at
T18784 301-304 DT denotes the
T18785 305-309 NNP denotes NIMR
T18786 309-310 , denotes ,
T18787 311-317 NNP denotes London
T18788 317-318 , denotes ,
T18789 319-323 NNP denotes Home
T18790 324-330 NNP denotes Office
T18791 330-331 , denotes ,
T18792 332-334 NNP denotes UK
T18793 334-335 , denotes ,
T18794 336-343 NNS denotes Animals
T18795 344-345 -LRB- denotes (
T18796 345-355 NNP denotes Scientific
T18797 356-366 NNPS denotes Procedures
T18798 366-367 -RRB- denotes )
T18799 368-371 NNP denotes Act
T18800 372-376 CD denotes 1986
T18801 377-379 CC denotes or
T18802 380-382 IN denotes at
T18803 383-386 DT denotes the
T18804 387-397 NNP denotes Washington
T18805 398-408 NNP denotes University
T18806 409-415 NNP denotes School
T18807 416-418 IN denotes of
T18808 419-427 NNP denotes Medicine
T18809 427-428 . denotes .
R14817 T18719 T18720 compound BALB/c,DO11
R14819 T18721 T18722 nummod .10,mice
R14820 T18722 T18722 ROOT mice,mice
R14821 T18723 T18735 amod transgenic,IL-4
R14822 T18724 T18723 prep for,transgenic
R14823 T18725 T18727 compound OVA-specific,WT
R14824 T18726 T18727 compound TCR,WT
R14825 T18727 T18724 pobj WT,for
R14826 T18728 T18723 cc or,transgenic
R14827 T18729 T18723 conj crossed,transgenic
R14828 T18730 T18729 advmod back,crossed
R14829 T18731 T18729 prep with,crossed
R14830 T18732 T18731 pobj Rag1,with
R14831 T18733 T18729 punct -,crossed
R14832 T18734 T18729 punct ",",crossed
R14833 T18735 T18722 dobj IL-4,mice
R14834 T18736 T18735 punct -,IL-4
R14835 T18737 T18735 punct ",",IL-4
R14836 T18738 T18748 dep IFN-γ,used
R14837 T18739 T18748 punct -,used
R14838 T18740 T18748 punct ",",used
R14839 T18741 T18748 nsubjpass STAT4,used
R14840 T18742 T18741 punct -,STAT4
R14841 T18743 T18742 punct ",",-
R14842 T18744 T18741 cc and,STAT4
R14843 T18745 T18746 amod STAT6-deficient,mice
R14844 T18746 T18741 conj mice,STAT4
R14845 T18747 T18748 auxpass were,used
R14846 T18748 T18748 ROOT used,used
R14847 T18749 T18748 prep as,used
R14848 T18750 T18751 det a,source
R14849 T18751 T18749 pobj source,as
R14850 T18752 T18751 prep of,source
R14851 T18753 T18755 amod antigen-specific,cells
R14852 T18754 T18755 compound T,cells
R14853 T18755 T18752 pobj cells,of
R14854 T18756 T18751 punct (,source
R14855 T18757 T18759 compound Murphy,al.
R14856 T18758 T18759 nmod et,al.
R14857 T18759 T18751 appos al.,source
R14858 T18760 T18759 punct ",",al.
R14859 T18761 T18759 appos 1990,al.
R14860 T18762 T18751 punct ;,source
R14861 T18763 T18765 compound Ouyang,al.
R14862 T18764 T18765 compound et,al.
R14864 T18766 T18765 punct ",",al.
R14865 T18767 T18765 npadvmod 1998,al.
R14866 T18768 T18765 punct ;,al.
R14867 T18769 T18771 compound Shoemaker,al.
R14868 T18770 T18771 compound et,al.
R14869 T18771 T18765 conj al.,al.
R14870 T18772 T18771 punct ",",al.
R14871 T18773 T18771 appos 2006,al.
R14872 T18774 T18771 punct ),al.
R14873 T18775 T18748 cc and,used
R14874 T18776 T18777 auxpass were,bred
R14875 T18777 T18748 conj bred,used
R14876 T18778 T18777 cc and,bred
R14877 T18779 T18777 conj maintained,bred
R14878 T18780 T18779 prep under,maintained
R14879 T18781 T18782 compound SPF,conditions
R14880 T18782 T18780 pobj conditions,under
R14881 T18783 T18779 prep at,maintained
R14882 T18784 T18785 det the,NIMR
R14883 T18785 T18783 pobj NIMR,at
R14884 T18786 T18785 punct ",",NIMR
R14885 T18787 T18785 conj London,NIMR
R14886 T18788 T18787 punct ",",London
R14887 T18789 T18790 compound Home,Office
R14888 T18790 T18787 conj Office,London
R14889 T18791 T18790 punct ",",Office
R14890 T18792 T18790 conj UK,Office
R14891 T18793 T18792 punct ",",UK
R14892 T18794 T18792 conj Animals,UK
R14893 T18795 T18797 punct (,Procedures
R14894 T18796 T18797 compound Scientific,Procedures
R14895 T18797 T18794 appos Procedures,Animals
R14896 T18798 T18797 punct ),Procedures
R14897 T18799 T18790 conj Act,Office
R14898 T18800 T18799 nummod 1986,Act
R14899 T18801 T18783 cc or,at
R14900 T18802 T18783 conj at,at
R14901 T18803 T18806 det the,School
R14902 T18804 T18805 compound Washington,University
R14903 T18805 T18806 compound University,School
R14904 T18806 T18802 pobj School,at
R14905 T18807 T18806 prep of,School
R14906 T18808 T18807 pobj Medicine,of
R14907 T18809 T18748 punct .,used
R14863 T18765 T18751 conj al.,source

GO-BP

Id Subject Object Predicate Lexical cue
T18970 48-51 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR

GO-MF

Id Subject Object Predicate Lexical cue
T18973 83-87 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4

GO-CC

Id Subject Object Predicate Lexical cue
T18976 48-51 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR
T18977 175-180 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T157 0-428 Sentence denotes BALB/c DO11.10 mice transgenic for OVA-specific TCR WT or crossed back with Rag1-, IL-4-, IFN-γ-, STAT4-, and STAT6-deficient mice were used as a source of antigen-specific T cells (Murphy et al., 1990; Ouyang et al., 1998; Shoemaker et al., 2006) and were bred and maintained under SPF conditions at the NIMR, London, Home Office, UK, Animals (Scientific Procedures) Act 1986 or at the Washington University School of Medicine.

events-check-again

Id Subject Object Predicate Lexical cue
T19021 35-38 Protein denotes OVA
T19022 76-80 Protein denotes Rag1
T19023 83-87 Protein denotes IL-4
T19024 90-95 Protein denotes IFN-γ
T19025 98-103 Protein denotes STAT4
T19026 110-115 Protein denotes STAT6
T19027 116-125 Negative_regulation denotes deficient
T19028 116-125 Negative_regulation denotes deficient
T19029 116-125 Negative_regulation denotes deficient
T19030 116-125 Negative_regulation denotes deficient
T19031 116-125 Negative_regulation denotes deficient
R15082 T19022 T19030 themeOf Rag1,deficient
R15083 T19023 T19028 themeOf IL-4,deficient
R15084 T19024 T19027 themeOf IFN-γ,deficient
R15085 T19025 T19031 themeOf STAT4,deficient
R15086 T19026 T19029 themeOf STAT6,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T19041 48-54 Protein denotes TCR WT
T19042 76-80 Protein denotes Rag1
T19043 90-95 Protein denotes IFN-γ
T19044 98-103 Protein denotes STAT4
T19045 110-115 Protein denotes STAT6
T19046 116-125 Negative_regulation denotes deficient
T19047 116-125 Negative_regulation denotes deficient
R15091 T19044 T19046 themeOf STAT4,deficient
R15092 T19045 T19047 themeOf STAT6,deficient

test2

Id Subject Object Predicate Lexical cue
T18656 35-38 Protein denotes OVA
T18657 76-80 Protein denotes Rag1
T18658 83-87 Protein denotes IL-4
T18659 90-95 Protein denotes IFN-γ
T18660 98-103 Protein denotes STAT4
T18661 110-115 Protein denotes STAT6
T18662 116-125 Negative_regulation denotes deficient
R14790 T18657 T18662 themeOf Rag1,deficient
R14791 T18658 T18662 themeOf IL-4,deficient
R14792 T18659 T18662 themeOf IFN-γ,deficient
R14793 T18660 T18662 themeOf STAT4,deficient
R14794 T18661 T18662 themeOf STAT6,deficient