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PMC:2791889 / 18158-18476 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11203 19-24 P22301 denotes IL-10
T11204 80-84 P27361 denotes ERK1
T11205 89-93 P28482 denotes ERK2
T11206 146-149 P04234 denotes CD3
T11207 146-149 P07766 denotes CD3
T11208 146-149 P09693 denotes CD3
T11209 146-149 P20963 denotes CD3
T11210 159-163 P10747 denotes CD28

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T10981 19-24 Protein denotes IL-10
T10982 25-35 Gene_expression denotes production
T10983 67-76 Positive_regulation denotes dependent true
T10984 67-76 Positive_regulation denotes dependent true
T10985 80-84 Protein denotes ERK1
T10986 89-93 Protein denotes ERK2
T10987 94-104 Positive_regulation denotes activation
T10988 94-104 Positive_regulation denotes activation
T10989 146-149 Protein denotes CD3
T10990 159-163 Protein denotes CD28
T10991 293-296 Protein denotes MEK
T10992 297-306 Negative_regulation denotes inhibitor
R8454 T10981 T10982 themeOf IL-10,production
R8455 T10982 T10983 themeOf production,dependent
R8456 T10982 T10984 themeOf production,dependent
R8457 T10985 T10987 themeOf ERK1,activation
R8458 T10986 T10988 themeOf ERK2,activation
R8459 T10987 T10984 causeOf activation,dependent
R8460 T10988 T10983 causeOf activation,dependent
R8461 T10991 T10992 themeOf MEK,inhibitor

2_test

Id Subject Object Predicate Lexical cue
19646904-16517715-46582694 252-256 16517715 denotes 2006
19646904-19114668-46582694 252-256 19114668 denotes 2006
19646904-16473830-46582694 252-256 16473830 denotes 2006
T40702 252-256 16517715 denotes 2006
T58715 252-256 19114668 denotes 2006
T81132 252-256 16473830 denotes 2006

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11040 0-2 TO denotes To
T11041 3-10 VB denotes address
T11042 11-18 IN denotes whether
T11043 19-24 NN denotes IL-10
T11044 25-35 NN denotes production
T11045 36-38 IN denotes by
T11046 39-42 NN denotes Th2
T11047 43-46 CC denotes and
T11048 47-51 NN denotes Th17
T11049 52-57 NN denotes cells
T11050 58-61 VB denotes was
T11051 62-66 RB denotes also
T11052 67-76 JJ denotes dependent
T11053 77-79 IN denotes on
T11054 80-84 NN denotes ERK1
T11055 85-88 CC denotes and
T11056 89-93 NN denotes ERK2
T11057 94-104 NN denotes activation
T11058 104-105 -COMMA- denotes ,
T11059 106-108 PRP denotes we
T11060 109-123 VB denotes differentiated
T11061 124-129 DT denotes these
T11062 130-135 NN denotes cells
T11063 136-140 IN denotes with
T11064 141-149 JJ denotes anti-CD3
T11065 150-153 CC denotes and
T11066 154-163 JJ denotes anti-CD28
T11067 164-166 IN denotes in
T11068 167-170 DT denotes the
T11069 171-178 NN denotes absence
T11070 179-181 IN denotes of
T11071 182-186 NN denotes APCs
T11072 187-188 -LRB- denotes (
T11073 188-197 NN denotes Shoemaker
T11074 198-204 NNP denotes et al.
T11075 204-205 -COMMA- denotes ,
T11076 206-210 CD denotes 2006
T11077 210-211 -COLON- denotes ;
T11078 212-220 NNP denotes Veldhoen
T11079 221-227 FW denotes et al.
T11080 227-228 -COMMA- denotes ,
T11081 229-233 CD denotes 2009
T11082 233-234 -COLON- denotes ;
T11083 235-243 NNP denotes Veldhoen
T11084 244-250 FW denotes et al.
T11085 250-251 -COMMA- denotes ,
T11086 252-256 CD denotes 2006
T11087 256-257 -RRB- denotes )
T11088 257-258 -COMMA- denotes ,
T11089 259-261 IN denotes in
T11090 262-265 DT denotes the
T11091 266-274 NN denotes presence
T11092 275-277 CC denotes or
T11093 278-285 NN denotes absence
T11094 286-288 IN denotes of
T11095 289-292 DT denotes the
T11096 293-296 NN denotes MEK
T11097 297-306 NN denotes inhibitor
T11098 307-308 -LRB- denotes (
T11099 308-316 NN denotes PD184352
T11100 316-317 -RRB- denotes )
R8499 T11041 T11040 arg1Of address,To
R8500 T11041 T11042 arg1Of address,whether
R8501 T11044 T11043 arg1Of production,IL-10
R8502 T11044 T11045 arg1Of production,by
R8503 T11044 T11050 arg1Of production,was
R8504 T11044 T11052 arg1Of production,dependent
R8505 T11046 T11047 arg1Of Th2,and
R8506 T11048 T11047 arg2Of Th17,and
R8507 T11049 T11045 arg2Of cells,by
R8508 T11049 T11046 arg1Of cells,Th2
R8509 T11049 T11048 arg1Of cells,Th17
R8510 T11050 T11042 arg2Of was,whether
R8511 T11050 T11051 arg1Of was,also
R8512 T11050 T11055 arg1Of was,and
R8513 T11052 T11050 arg2Of dependent,was
R8514 T11052 T11053 arg1Of dependent,on
R8515 T11054 T11053 arg2Of ERK1,on
R8516 T11056 T11041 arg2Of ERK2,address
R8517 T11057 T11041 arg1Of activation,address
R8518 T11057 T11058 arg1Of activation,","
R8519 T11057 T11060 arg1Of activation,differentiated
R8520 T11059 T11058 arg2Of we,","
R8521 T11060 T11040 modOf differentiated,To
R8522 T11060 T11063 arg1Of differentiated,with
R8523 T11060 T11067 arg1Of differentiated,in
R8524 T11060 T11088 arg1Of differentiated,","
R8525 T11060 T11089 arg1Of differentiated,in
R8526 T11062 T11060 arg2Of cells,differentiated
R8527 T11062 T11061 arg1Of cells,these
R8528 T11064 T11065 arg1Of anti-CD3,and
R8529 T11065 T11063 arg2Of and,with
R8530 T11066 T11065 arg2Of anti-CD28,and
R8531 T11069 T11067 arg2Of absence,in
R8532 T11069 T11068 arg1Of absence,the
R8533 T11069 T11070 arg1Of absence,of
R8534 T11071 T11070 arg2Of APCs,of
R8535 T11071 T11072 arg1Of APCs,(
R8536 T11074 T11073 arg1Of et al.,Shoemaker
R8537 T11074 T11075 arg1Of et al.,","
R8538 T11074 T11077 arg1Of et al.,;
R8539 T11076 T11075 arg2Of 2006,","
R8540 T11077 T11082 arg1Of ;,;
R8541 T11078 T11077 arg2Of Veldhoen,;
R8542 T11078 T11079 arg1Of Veldhoen,et al.
R8543 T11078 T11080 arg1Of Veldhoen,","
R8544 T11081 T11080 arg2Of 2009,","
R8545 T11082 T11072 arg2Of ;,(
R8546 T11083 T11082 arg2Of Veldhoen,;
R8547 T11083 T11084 arg1Of Veldhoen,et al.
R8548 T11083 T11085 arg1Of Veldhoen,","
R8549 T11086 T11085 arg2Of 2006,","
R8550 T11087 T11072 arg3Of ),(
R8551 T11091 T11092 arg1Of presence,or
R8552 T11092 T11089 arg2Of or,in
R8553 T11092 T11090 arg1Of or,the
R8554 T11092 T11094 arg1Of or,of
R8555 T11093 T11092 arg2Of absence,or
R8556 T11097 T11094 arg2Of inhibitor,of
R8557 T11097 T11095 arg1Of inhibitor,the
R8558 T11097 T11096 arg1Of inhibitor,MEK
R8559 T11097 T11098 arg1Of inhibitor,(
R8560 T11099 T11098 arg2Of PD184352,(
R8561 T11100 T11098 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11236 0-2 TO denotes To
T11237 3-10 VB denotes address
T11238 11-18 IN denotes whether
T11239 19-24 NN denotes IL-10
T11240 25-35 NN denotes production
T11241 36-38 IN denotes by
T11242 39-42 NNP denotes Th2
T11243 43-46 CC denotes and
T11244 47-51 NNP denotes Th17
T11245 52-57 NNS denotes cells
T11246 58-61 VBD denotes was
T11247 62-66 RB denotes also
T11248 67-76 JJ denotes dependent
T11249 77-79 IN denotes on
T11250 80-84 CD denotes ERK1
T11251 85-88 CC denotes and
T11252 89-93 CD denotes ERK2
T11253 94-104 NN denotes activation
T11254 104-105 , denotes ,
T11255 106-108 PRP denotes we
T11256 109-123 VBD denotes differentiated
T11257 124-129 DT denotes these
T11258 130-135 NNS denotes cells
T11259 136-140 IN denotes with
T11260 141-149 JJ denotes anti-CD3
T11261 150-153 CC denotes and
T11262 154-163 JJ denotes anti-CD28
T11263 164-166 IN denotes in
T11264 167-170 DT denotes the
T11265 171-178 NN denotes absence
T11266 179-181 IN denotes of
T11267 182-186 NNS denotes APCs
T11268 187-188 -LRB- denotes (
T11269 188-197 NN denotes Shoemaker
T11270 198-200 FW denotes et
T11271 201-204 FW denotes al.
T11272 204-205 , denotes ,
T11273 206-210 CD denotes 2006
T11274 210-211 : denotes ;
T11275 212-220 NNP denotes Veldhoen
T11276 221-223 FW denotes et
T11277 224-227 FW denotes al.
T11278 227-228 , denotes ,
T11279 229-233 CD denotes 2009
T11280 233-234 : denotes ;
T11281 235-243 NNP denotes Veldhoen
T11282 244-246 FW denotes et
T11283 247-250 FW denotes al.
T11284 250-251 , denotes ,
T11285 252-256 CD denotes 2006
T11286 256-257 -RRB- denotes )
T11287 257-258 , denotes ,
T11288 259-261 IN denotes in
T11289 262-265 DT denotes the
T11290 266-274 NN denotes presence
T11291 275-277 CC denotes or
T11292 278-285 NN denotes absence
T11293 286-288 IN denotes of
T11294 289-292 DT denotes the
T11295 293-296 NNP denotes MEK
T11296 297-306 NN denotes inhibitor
T11297 307-308 -LRB- denotes (
T11298 308-316 NNP denotes PD184352
T11299 316-317 -RRB- denotes )
T11300 317-318 . denotes .
R8678 T11236 T11237 aux To,address
R8679 T11237 T11256 advcl address,differentiated
R8680 T11238 T11246 mark whether,was
R8681 T11239 T11240 compound IL-10,production
R8682 T11240 T11246 nsubj production,was
R8683 T11241 T11240 prep by,production
R8684 T11242 T11245 nmod Th2,cells
R8685 T11243 T11242 cc and,Th2
R8686 T11244 T11242 conj Th17,Th2
R8687 T11245 T11241 pobj cells,by
R8688 T11246 T11237 ccomp was,address
R8689 T11247 T11246 advmod also,was
R8690 T11248 T11246 acomp dependent,was
R8691 T11249 T11248 prep on,dependent
R8692 T11250 T11253 nummod ERK1,activation
R8693 T11251 T11250 cc and,ERK1
R8694 T11252 T11250 conj ERK2,ERK1
R8695 T11253 T11249 pobj activation,on
R8696 T11254 T11256 punct ",",differentiated
R8697 T11255 T11256 nsubj we,differentiated
R8699 T11257 T11258 det these,cells
R8700 T11258 T11256 dobj cells,differentiated
R8701 T11259 T11256 prep with,differentiated
R8702 T11260 T11277 nmod anti-CD3,al.
R8703 T11261 T11260 cc and,anti-CD3
R8704 T11262 T11260 conj anti-CD28,anti-CD3
R8705 T11263 T11260 prep in,anti-CD3
R8706 T11264 T11265 det the,absence
R8707 T11265 T11263 pobj absence,in
R8708 T11266 T11265 prep of,absence
R8709 T11267 T11266 pobj APCs,of
R8710 T11268 T11271 punct (,al.
R8711 T11269 T11271 compound Shoemaker,al.
R8712 T11270 T11271 nmod et,al.
R8713 T11271 T11265 appos al.,absence
R8714 T11272 T11271 punct ",",al.
R8715 T11273 T11271 npadvmod 2006,al.
R8716 T11274 T11271 punct ;,al.
R8732 T11290 T11288 pobj presence,in
R8733 T11291 T11290 cc or,presence
R8734 T11292 T11290 conj absence,presence
R8735 T11293 T11292 prep of,absence
R8736 T11294 T11296 det the,inhibitor
R8737 T11295 T11296 compound MEK,inhibitor
R8738 T11296 T11293 pobj inhibitor,of
R8739 T11297 T11298 punct (,PD184352
R8740 T11298 T11296 appos PD184352,inhibitor
R8741 T11299 T11256 punct ),differentiated
R8742 T11300 T11256 punct .,differentiated
R8717 T11275 T11277 compound Veldhoen,al.
R8718 T11276 T11277 compound et,al.
R8719 T11277 T11259 pobj al.,with
R8720 T11278 T11277 punct ",",al.
R8721 T11279 T11277 appos 2009,al.
R8722 T11280 T11277 punct ;,al.
R8723 T11281 T11283 compound Veldhoen,al.
R8724 T11282 T11283 compound et,al.
R8725 T11283 T11277 conj al.,al.
R8731 T11289 T11290 det the,presence
R8726 T11284 T11283 punct ",",al.
R8727 T11285 T11283 npadvmod 2006,al.
R8728 T11286 T11256 punct ),differentiated
R8729 T11287 T11256 punct ",",differentiated
R8730 T11288 T11256 prep in,differentiated

GO-BP

Id Subject Object Predicate Lexical cue
T11412 19-35 http://purl.obolibrary.org/obo/GO_0032653 denotes IL-10 production
T11416 19-35 http://purl.obolibrary.org/obo/GO_0032613 denotes IL-10 production
T11420 80-84 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T11423 89-93 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK2
T11427 80-104 http://purl.obolibrary.org/obo/GO_0070374 denotes ERK1 and ERK2 activation
T11429 109-135 http://purl.obolibrary.org/obo/GO_0030154 denotes differentiated these cells

GO-MF

Id Subject Object Predicate Lexical cue
T11436 19-24 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10
T11442 80-84 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T11445 89-93 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK2

GO-CC

Id Subject Object Predicate Lexical cue
T11450 52-57 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T11451 130-135 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11023 0-318 Sentence denotes To address whether IL-10 production by Th2 and Th17 cells was also dependent on ERK1 and ERK2 activation, we differentiated these cells with anti-CD3 and anti-CD28 in the absence of APCs (Shoemaker et al., 2006; Veldhoen et al., 2009; Veldhoen et al., 2006), in the presence or absence of the MEK inhibitor (PD184352).
T94 0-318 Sentence denotes To address whether IL-10 production by Th2 and Th17 cells was also dependent on ERK1 and ERK2 activation, we differentiated these cells with anti-CD3 and anti-CD28 in the absence of APCs (Shoemaker et al., 2006; Veldhoen et al., 2009; Veldhoen et al., 2006), in the presence or absence of the MEK inhibitor (PD184352).

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T11560 19-24 Protein denotes IL-10
T11561 25-35 Gene_expression denotes production
T11562 67-76 Positive_regulation denotes dependent true
T11563 67-76 Positive_regulation denotes dependent true
T11564 80-84 Protein denotes ERK1
T11565 89-93 Protein denotes ERK2
T11566 94-104 Positive_regulation denotes activation
T11567 94-104 Positive_regulation denotes activation
T11568 146-149 Protein denotes CD3
T11569 159-163 Protein denotes CD28
T11570 293-296 Protein denotes MEK
T11571 297-306 Negative_regulation denotes inhibitor
R8931 T11560 T11561 themeOf IL-10,production
R8932 T11561 T11562 themeOf production,dependent
R8933 T11561 T11563 themeOf production,dependent
R8934 T11564 T11566 themeOf ERK1,activation
R8935 T11565 T11567 themeOf ERK2,activation
R8936 T11566 T11563 causeOf activation,dependent
R8937 T11567 T11562 causeOf activation,dependent
R8938 T11570 T11571 themeOf MEK,inhibitor

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11607 80-84 Protein denotes ERK1
T11608 89-93 Protein denotes ERK2
T11609 141-149 Protein denotes anti-CD3
T11610 154-163 Protein denotes anti-CD28
T11611 293-296 Protein denotes MEK
T11612 94-104 Positive_regulation denotes activation
T11613 94-104 Positive_regulation denotes activation
T11614 297-306 Negative_regulation denotes inhibitor
R8965 T11607 T11612 themeOf ERK1,activation
R8966 T11608 T11613 themeOf ERK2,activation
R8967 T11611 T11614 themeOf MEK,inhibitor

test2

Id Subject Object Predicate Lexical cue Speculation
T10939 19-24 Protein denotes IL-10 true
T10940 25-35 Gene_expression denotes production
T10941 67-76 Positive_regulation denotes dependent true
T10942 80-84 Protein denotes ERK1
T10943 89-93 Protein denotes ERK2
T10944 94-104 Positive_regulation denotes activation
T10945 146-149 Protein denotes CD3
T10946 159-163 Protein denotes CD28
T10947 293-296 Protein denotes MEK
T10948 297-306 Negative_regulation denotes inhibitor
R8425 T10939 T10940 themeOf IL-10,production
R8426 T10940 T10941 themeOf production,dependent
R8427 T10942 T10944 themeOf ERK1,activation
R8428 T10943 T10944 themeOf ERK2,activation
R8429 T10944 T10941 causeOf activation,dependent
R8430 T10947 T10948 themeOf MEK,inhibitor