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PMC:2674207 / 18033-18512 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6080 0-5 NN denotes NF-κB
T6081 6-16 NN denotes Activation
T6082 17-22 NN denotes NF-κB
T6083 23-30 NN denotes binding
T6084 31-39 NN denotes activity
T6085 40-42 IN denotes in
T6086 43-50 JJ denotes nuclear
T6087 51-59 NN denotes extracts
T6088 60-63 VB denotes was
T6089 64-74 VB denotes determined
T6090 75-80 VB denotes using
T6091 81-83 DT denotes an
T6092 84-95 JJ denotes ELISA-based
T6093 96-99 NN denotes kit
T6094 100-101 -LRB- denotes (
T6095 101-109 NN denotes Trans-AM
T6096 110-113 NN denotes p65
T6097 113-114 -COMMA- denotes ,
T6098 115-121 NNP denotes Active
T6099 122-127 NNP denotes Motif
T6100 127-128 -COMMA- denotes ,
T6101 129-138 NNP denotes Rixensart
T6102 138-139 -COMMA- denotes ,
T6103 140-147 NNP denotes Belgium
T6104 147-148 -RRB- denotes )
T6105 150-152 IN denotes In
T6106 153-158 NN denotes brief
T6107 158-159 -COMMA- denotes ,
T6108 160-161 CD denotes 5
T6109 162-164 NN denotes µg
T6110 165-167 IN denotes of
T6111 168-175 JJ denotes nuclear
T6112 176-184 NN denotes extracts
T6113 185-189 VB denotes were
T6114 190-199 VB denotes incubated
T6115 200-204 IN denotes with
T6116 205-206 DT denotes a
T6117 207-212 NN denotes plate
T6118 213-219 VB denotes coated
T6119 220-224 IN denotes with
T6120 225-227 DT denotes an
T6121 228-233 NN denotes NF-κB
T6122 234-243 NN denotes consensus
T6123 244-259 NN denotes oligonucleotide
T6124 261-267 NN denotes Plates
T6125 268-272 VB denotes were
T6126 273-279 VB denotes washed
T6127 280-286 IN denotes before
T6128 287-295 NN denotes addition
T6129 296-298 IN denotes of
T6130 299-301 DT denotes an
T6131 302-310 JJ denotes anti-p65
T6132 311-319 NN denotes antibody
T6133 321-329 NN denotes Antibody
T6134 330-337 NN denotes binding
T6135 338-341 VB denotes was
T6136 342-350 VB denotes detected
T6137 351-355 IN denotes with
T6138 356-357 DT denotes a
T6139 358-367 JJ denotes secondary
T6140 368-382 JJ denotes HRP-conjugated
T6141 383-391 NN denotes antibody
T6142 392-395 CC denotes and
T6143 396-405 VB denotes developed
T6144 406-410 IN denotes with
T6145 411-414 NN denotes TMB
T6146 415-424 NN denotes substrate
T6147 426-429 DT denotes The
T6148 430-439 NN denotes intensity
T6149 440-442 IN denotes of
T6150 443-446 DT denotes the
T6151 447-455 NN denotes reaction
T6152 456-459 VB denotes was
T6153 460-468 VB denotes measured
T6154 469-471 IN denotes at
T6155 472-475 CD denotes 450
T6156 476-478 NN denotes nm
R5227 T6081 T6080 arg1Of Activation,NF-κB
R5228 T6084 T6082 arg1Of activity,NF-κB
R5229 T6084 T6083 arg1Of activity,binding
R5230 T6084 T6085 arg1Of activity,in
R5231 T6084 T6088 arg1Of activity,was
R5232 T6084 T6089 arg2Of activity,determined
R5233 T6087 T6085 arg2Of extracts,in
R5234 T6087 T6086 arg1Of extracts,nuclear
R5235 T6089 T6088 arg2Of determined,was
R5236 T6090 T6089 arg3Of using,determined
R5237 T6093 T6090 arg2Of kit,using
R5238 T6093 T6091 arg1Of kit,an
R5239 T6093 T6092 arg1Of kit,ELISA-based
R5240 T6093 T6094 arg1Of kit,(
R5241 T6096 T6095 arg1Of p65,Trans-AM
R5242 T6096 T6097 arg1Of p65,","
R5243 T6096 T6100 arg1Of p65,","
R5244 T6099 T6097 arg2Of Motif,","
R5245 T6099 T6098 arg1Of Motif,Active
R5246 T6100 T6094 arg2Of ",",(
R5247 T6101 T6100 arg2Of Rixensart,","
R5248 T6101 T6102 arg1Of Rixensart,","
R5249 T6103 T6102 arg2Of Belgium,","
R5250 T6104 T6094 arg3Of ),(
R5251 T6106 T6105 arg2Of brief,In
R5252 T6109 T6108 arg1Of µg,5
R5253 T6109 T6110 arg1Of µg,of
R5254 T6109 T6113 arg1Of µg,were
R5255 T6109 T6114 arg2Of µg,incubated
R5256 T6112 T6110 arg2Of extracts,of
R5257 T6112 T6111 arg1Of extracts,nuclear
R5258 T6114 T6105 arg1Of incubated,In
R5259 T6114 T6107 arg1Of incubated,","
R5260 T6114 T6113 arg2Of incubated,were
R5261 T6114 T6115 arg1Of incubated,with
R5262 T6117 T6115 arg2Of plate,with
R5263 T6117 T6116 arg1Of plate,a
R5264 T6117 T6118 arg2Of plate,coated
R5265 T6118 T6119 arg1Of coated,with
R5266 T6123 T6119 arg2Of oligonucleotide,with
R5267 T6123 T6120 arg1Of oligonucleotide,an
R5268 T6123 T6121 arg1Of oligonucleotide,NF-κB
R5269 T6123 T6122 arg1Of oligonucleotide,consensus
R5270 T6124 T6125 arg1Of Plates,were
R5271 T6124 T6126 arg2Of Plates,washed
R5272 T6126 T6125 arg2Of washed,were
R5273 T6126 T6127 arg1Of washed,before
R5274 T6128 T6127 arg2Of addition,before
R5275 T6128 T6129 arg1Of addition,of
R5276 T6132 T6129 arg2Of antibody,of
R5277 T6132 T6130 arg1Of antibody,an
R5278 T6132 T6131 arg1Of antibody,anti-p65
R5279 T6134 T6133 arg1Of binding,Antibody
R5280 T6134 T6135 arg1Of binding,was
R5281 T6134 T6136 arg2Of binding,detected
R5282 T6134 T6143 arg2Of binding,developed
R5283 T6136 T6137 arg1Of detected,with
R5284 T6136 T6142 arg1Of detected,and
R5285 T6141 T6137 arg2Of antibody,with
R5286 T6141 T6138 arg1Of antibody,a
R5287 T6141 T6139 arg1Of antibody,secondary
R5288 T6141 T6140 arg1Of antibody,HRP-conjugated
R5289 T6142 T6135 arg2Of and,was
R5290 T6143 T6142 arg2Of developed,and
R5291 T6143 T6144 arg1Of developed,with
R5292 T6146 T6144 arg2Of substrate,with
R5293 T6146 T6145 arg1Of substrate,TMB
R5294 T6148 T6147 arg1Of intensity,The
R5295 T6148 T6149 arg1Of intensity,of
R5296 T6148 T6152 arg1Of intensity,was
R5297 T6148 T6153 arg2Of intensity,measured
R5298 T6151 T6149 arg2Of reaction,of
R5299 T6151 T6150 arg1Of reaction,the
R5300 T6153 T6152 arg2Of measured,was
R5301 T6153 T6154 arg1Of measured,at
R5302 T6156 T6154 arg2Of nm,at
R5303 T6156 T6155 arg1Of nm,450

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6161 0-5 NNP denotes NF-κB
T6162 6-16 NNP denotes Activation
T6163 17-22 NNP denotes NF-κB
T6164 23-30 JJ denotes binding
T6165 31-39 NN denotes activity
T6166 40-42 IN denotes in
T6167 43-50 JJ denotes nuclear
T6168 51-59 NNS denotes extracts
T6169 60-63 VBD denotes was
T6170 64-74 VBN denotes determined
T6171 75-80 VBG denotes using
T6172 81-83 DT denotes an
T6173 84-95 JJ denotes ELISA-based
T6174 96-99 NN denotes kit
T6175 100-101 -LRB- denotes (
T6176 101-109 JJ denotes Trans-AM
T6177 110-113 NNS denotes p65
T6178 113-114 , denotes ,
T6179 115-121 NNP denotes Active
T6180 122-127 NNP denotes Motif
T6181 127-128 , denotes ,
T6182 129-138 NNP denotes Rixensart
T6183 138-139 , denotes ,
T6184 140-147 NNP denotes Belgium
T6185 147-148 -RRB- denotes )
T6186 148-149 . denotes .
T6187 150-152 IN denotes In
T6188 153-158 NN denotes brief
T6189 158-159 , denotes ,
T6190 160-161 CD denotes 5
T6191 162-164 NN denotes µg
T6192 165-167 IN denotes of
T6193 168-175 JJ denotes nuclear
T6194 176-184 NNS denotes extracts
T6195 185-189 VBD denotes were
T6196 190-199 VBN denotes incubated
T6197 200-204 IN denotes with
T6198 205-206 DT denotes a
T6199 207-212 NN denotes plate
T6200 213-219 VBN denotes coated
T6201 220-224 IN denotes with
T6202 225-227 DT denotes an
T6203 228-233 JJ denotes NF-κB
T6204 234-243 NN denotes consensus
T6205 244-259 NN denotes oligonucleotide
T6206 259-260 . denotes .
T6207 261-267 NNS denotes Plates
T6208 268-272 VBD denotes were
T6209 273-279 VBN denotes washed
T6210 280-286 IN denotes before
T6211 287-295 NN denotes addition
T6212 296-298 IN denotes of
T6213 299-301 DT denotes an
T6214 302-310 JJ denotes anti-p65
T6215 311-319 NN denotes antibody
T6216 319-320 . denotes .
T6217 321-329 NN denotes Antibody
T6218 330-337 JJ denotes binding
T6219 338-341 VBD denotes was
T6220 342-350 VBN denotes detected
T6221 351-355 IN denotes with
T6222 356-357 DT denotes a
T6223 358-367 JJ denotes secondary
T6224 368-382 JJ denotes HRP-conjugated
T6225 383-391 NN denotes antibody
T6226 392-395 CC denotes and
T6227 396-405 VBN denotes developed
T6228 406-410 IN denotes with
T6229 411-414 NNP denotes TMB
T6230 415-424 NN denotes substrate
T6231 424-425 . denotes .
T6232 426-429 DT denotes The
T6233 430-439 NN denotes intensity
T6234 440-442 IN denotes of
T6235 443-446 DT denotes the
T6236 447-455 NN denotes reaction
T6237 456-459 VBD denotes was
T6238 460-468 VBN denotes measured
T6239 469-471 IN denotes at
T6240 472-475 CD denotes 450
T6241 476-478 NN denotes nm
T6242 478-479 . denotes .
R5304 T6161 T6163 compound NF-κB,NF-κB
R5305 T6162 T6163 compound Activation,NF-κB
R5306 T6163 T6170 nsubjpass NF-κB,determined
R5307 T6164 T6165 amod binding,activity
R5308 T6165 T6163 dobj activity,NF-κB
R5309 T6166 T6165 prep in,activity
R5310 T6167 T6168 amod nuclear,extracts
R5311 T6168 T6166 pobj extracts,in
R5312 T6169 T6170 auxpass was,determined
R5313 T6170 T6170 ROOT determined,determined
R5342 T6199 T6197 pobj plate,with
R5343 T6200 T6199 acl coated,plate
R5344 T6201 T6200 prep with,coated
R5345 T6202 T6204 det an,consensus
R5346 T6203 T6204 amod NF-κB,consensus
R5347 T6204 T6205 compound consensus,oligonucleotide
R5348 T6205 T6201 pobj oligonucleotide,with
R5349 T6206 T6196 punct .,incubated
R5350 T6207 T6209 nsubjpass Plates,washed
R5351 T6208 T6209 auxpass were,washed
R5352 T6209 T6209 ROOT washed,washed
R5353 T6210 T6209 prep before,washed
R5354 T6211 T6210 pobj addition,before
R5355 T6212 T6211 prep of,addition
R5356 T6213 T6215 det an,antibody
R5357 T6214 T6215 amod anti-p65,antibody
R5358 T6215 T6212 pobj antibody,of
R5359 T6216 T6209 punct .,washed
R5360 T6217 T6218 compound Antibody,binding
R5361 T6218 T6220 nsubjpass binding,detected
R5362 T6219 T6220 auxpass was,detected
R5363 T6220 T6220 ROOT detected,detected
R5364 T6221 T6220 prep with,detected
R5365 T6222 T6225 det a,antibody
R5366 T6223 T6225 amod secondary,antibody
R5367 T6224 T6225 amod HRP-conjugated,antibody
R5368 T6225 T6221 pobj antibody,with
R5369 T6226 T6220 cc and,detected
R5370 T6227 T6220 conj developed,detected
R5371 T6228 T6227 prep with,developed
R5372 T6229 T6230 compound TMB,substrate
R5373 T6230 T6228 pobj substrate,with
R5374 T6231 T6220 punct .,detected
R5375 T6232 T6233 det The,intensity
R5376 T6233 T6238 nsubjpass intensity,measured
R5377 T6234 T6233 prep of,intensity
R5378 T6235 T6236 det the,reaction
R5379 T6236 T6234 pobj reaction,of
R5380 T6237 T6238 auxpass was,measured
R5381 T6238 T6238 ROOT measured,measured
R5382 T6239 T6238 prep at,measured
R5383 T6240 T6241 nummod 450,nm
R5384 T6241 T6239 pobj nm,at
R5385 T6242 T6238 punct .,measured
R5314 T6171 T6170 advcl using,determined
R5315 T6172 T6174 det an,kit
R5316 T6173 T6174 amod ELISA-based,kit
R5317 T6174 T6171 dobj kit,using
R5318 T6175 T6174 punct (,kit
R5319 T6176 T6177 amod Trans-AM,p65
R5320 T6177 T6174 appos p65,kit
R5321 T6178 T6177 punct ",",p65
R5322 T6179 T6180 compound Active,Motif
R5323 T6180 T6177 appos Motif,p65
R5324 T6181 T6180 punct ",",Motif
R5325 T6182 T6180 conj Rixensart,Motif
R5326 T6183 T6182 punct ",",Rixensart
R5327 T6184 T6182 conj Belgium,Rixensart
R5328 T6185 T6174 punct ),kit
R5329 T6186 T6170 punct .,determined
R5330 T6187 T6196 prep In,incubated
R5331 T6188 T6187 pobj brief,In
R5332 T6189 T6196 punct ",",incubated
R5333 T6190 T6191 nummod 5,µg
R5334 T6191 T6196 nsubjpass µg,incubated
R5335 T6192 T6191 prep of,µg
R5336 T6193 T6194 amod nuclear,extracts
R5337 T6194 T6192 pobj extracts,of
R5338 T6195 T6196 auxpass were,incubated
R5339 T6196 T6196 ROOT incubated,incubated
R5340 T6197 T6196 prep with,incubated
R5341 T6198 T6199 det a,plate

GO-MF

Id Subject Object Predicate Lexical cue
T6249 17-30 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T6250 23-30 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T6251 330-337 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T6252 311-319 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T6253 383-391 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T6254 311-319 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T6255 383-391 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T6256 311-319 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T6257 383-391 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T6074 0-16 Sentence denotes NF-κB Activation
T6075 17-149 Sentence denotes NF-κB binding activity in nuclear extracts was determined using an ELISA-based kit (Trans-AM p65, Active Motif, Rixensart, Belgium).
T6076 150-260 Sentence denotes In brief, 5 µg of nuclear extracts were incubated with a plate coated with an NF-κB consensus oligonucleotide.
T6077 261-320 Sentence denotes Plates were washed before addition of an anti-p65 antibody.
T6078 321-425 Sentence denotes Antibody binding was detected with a secondary HRP-conjugated antibody and developed with TMB substrate.
T6079 426-479 Sentence denotes The intensity of the reaction was measured at 450 nm.
T124 0-16 Sentence denotes NF-κB Activation
T125 17-149 Sentence denotes NF-κB binding activity in nuclear extracts was determined using an ELISA-based kit (Trans-AM p65, Active Motif, Rixensart, Belgium).
T126 150-260 Sentence denotes In brief, 5 µg of nuclear extracts were incubated with a plate coated with an NF-κB consensus oligonucleotide.
T127 261-320 Sentence denotes Plates were washed before addition of an anti-p65 antibody.
T128 321-425 Sentence denotes Antibody binding was detected with a secondary HRP-conjugated antibody and developed with TMB substrate.
T129 426-479 Sentence denotes The intensity of the reaction was measured at 450 nm.

events-check-again

Id Subject Object Predicate Lexical cue
T6260 110-113 Protein denotes p65

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T6261 0-5 Protein denotes NF-κB
T6262 6-16 Positive_regulation denotes Activation
T6263 17-22 Protein denotes NF-κB
T6264 23-30 Binding denotes binding
T6265 228-259 Protein denotes NF-κB consensus oligonucleotide
T6266 302-319 Protein denotes anti-p65 antibody
T6267 368-391 Protein denotes HRP-conjugated antibody
T6268 330-337 Binding denotes binding
R5386 T6261 T6262 themeOf NF-κB,Activation
R5387 T6263 T6264 themeOf NF-κB,binding
R5388 T6267 T6268 themeOf HRP-conjugated antibody,binding

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T6073 110-113 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6157 110-113 Q04206 denotes p65
T6158 110-113 P21579 denotes p65
T6159 307-310 Q04206 denotes p65
T6160 307-310 P21579 denotes p65

test2

Id Subject Object Predicate Lexical cue
T6072 110-113 Protein denotes p65