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PMC:2664230 / 12528-13416 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T5627 92-97 Protein denotes TNF-α
T5628 98-108 Gene_expression denotes production
T5629 138-149 Regulation denotes involvement
T5630 157-168 Negative_regulation denotes attenuation
T5631 176-183 Positive_regulation denotes induced
T5632 184-189 Protein denotes TNF-α
T5633 190-200 Gene_expression denotes production
T5634 776-781 Protein denotes TNF-α
T5622 0-4 Regulation denotes Role
T5623 19-26 Positive_regulation denotes induced
T5624 44-49 Protein denotes TNF-α
T5625 50-60 Gene_expression denotes production
T5626 77-81 Regulation denotes role
R4667 T5623 T5622 themeOf induced,Role
R4668 T5624 T5625 themeOf TNF-α,production
R4669 T5625 T5623 themeOf production,induced
R4670 T5627 T5628 themeOf TNF-α,production
R4671 T5628 T5626 themeOf production,role
R4672 T5630 T5629 themeOf attenuation,involvement
R4673 T5631 T5630 themeOf induced,attenuation
R4674 T5632 T5633 themeOf TNF-α,production
R4675 T5633 T5631 themeOf production,induced

2_test

Id Subject Object Predicate Lexical cue
18568240-17689696-22101120 584-586 17689696 denotes 10

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5799 0-4 NN denotes Role
T5800 5-7 IN denotes of
T5801 8-11 NN denotes PKA
T5802 12-14 IN denotes on
T5803 15-26 JJ denotes LPS-induced
T5804 27-38 JJ denotes mononuclear
T5805 39-43 NN denotes cell
T5806 44-49 NN denotes TNF-α
T5807 50-60 NN denotes production
T5808 61-63 TO denotes To
T5809 64-72 VB denotes evaluate
T5810 73-76 DT denotes the
T5811 77-81 NN denotes role
T5812 82-84 IN denotes of
T5813 85-88 NN denotes PKA
T5814 89-91 IN denotes on
T5815 92-97 NN denotes TNF-α
T5816 98-108 NN denotes production
T5817 109-111 IN denotes in
T5818 112-123 JJ denotes mononuclear
T5819 124-129 NN denotes cells
T5820 130-133 CC denotes and
T5821 134-137 PRP-DOLLAR- denotes its
T5822 138-149 NN denotes involvement
T5823 150-152 IN denotes in
T5824 153-156 DT denotes the
T5825 157-168 NN denotes attenuation
T5826 169-171 IN denotes of
T5827 172-183 JJ denotes LPS-induced
T5828 184-189 NN denotes TNF-α
T5829 190-200 NN denotes production
T5830 201-209 VB denotes observed
T5831 210-219 VB denotes following
T5832 220-223 NN denotes PTX
T5833 224-233 NN denotes treatment
T5834 233-234 -COMMA- denotes ,
T5835 235-238 NN denotes H89
T5836 238-239 -COMMA- denotes ,
T5837 240-241 DT denotes a
T5838 242-250 JJ denotes specific
T5839 251-254 NN denotes PKA
T5840 255-264 NN denotes inhibitor
T5841 264-265 -COMMA- denotes ,
T5842 266-269 VB denotes was
T5843 270-278 VB denotes utilized
T5844 280-288 VB denotes Isolated
T5845 289-300 JJ denotes mononuclear
T5846 301-306 NN denotes cells
T5847 307-311 VB denotes were
T5848 312-321 VB denotes incubated
T5849 322-331 VB denotes according
T5850 332-334 TO denotes to
T5851 335-338 DT denotes the
T5852 339-348 NN denotes treatment
T5853 349-355 NN denotes groups
T5854 356-365 VB denotes described
T5855 366-371 RB denotes above
T5856 372-374 IN denotes in
T5857 375-378 DT denotes the
T5858 379-387 NN denotes presence
T5859 388-391 CC denotes and
T5860 392-399 NN denotes absence
T5861 400-402 IN denotes of
T5862 403-415 NN denotes pretreatment
T5863 416-420 IN denotes with
T5864 421-424 NN denotes H89
T5865 425-426 -LRB- denotes (
T5866 426-428 CD denotes 10
T5867 429-431 NN denotes μM
T5868 431-432 -RRB- denotes )
T5869 433-436 IN denotes for
T5870 437-438 CD denotes 1
T5871 439-443 NN denotes hour
T5872 444-446 IN denotes at
T5873 447-451 NN denotes 37ºC
T5874 453-456 DT denotes The
T5875 457-461 NN denotes dose
T5876 462-464 IN denotes of
T5877 465-468 NN denotes H89
T5878 469-472 VB denotes was
T5879 473-479 VB denotes chosen
T5880 480-485 VB denotes based
T5881 486-488 IN denotes on
T5882 489-497 JJ denotes previous
T5883 498-502 NN denotes work
T5884 503-508 WDT denotes which
T5885 509-521 VB denotes demonstrated
T5886 522-530 JJ denotes specific
T5887 531-534 CC denotes and
T5888 535-543 JJ denotes complete
T5889 544-554 NN denotes inhibition
T5890 555-557 IN denotes of
T5891 558-561 NN denotes PKA
T5892 562-564 IN denotes at
T5893 565-569 DT denotes this
T5894 570-586 NN denotes concentration.10
T5895 587-592 IN denotes Since
T5896 593-596 DT denotes the
T5897 597-605 NN denotes activity
T5898 606-608 IN denotes of
T5899 609-613 DT denotes this
T5900 614-623 NN denotes inhibitor
T5901 624-626 VB denotes is
T5902 627-631 CC denotes both
T5903 632-640 JJ denotes specific
T5904 641-644 CC denotes and
T5905 645-655 JJ denotes consistent
T5906 656-658 IN denotes at
T5907 659-663 DT denotes this
T5908 664-673 VB denotes specified
T5909 674-678 NN denotes dose
T5910 678-679 -COMMA- denotes ,
T5911 680-682 PRP denotes we
T5912 683-686 VB denotes did
T5913 687-690 RB denotes not
T5914 691-698 VB denotes include
T5915 699-710 NN denotes experiments
T5916 711-715 IN denotes with
T5917 716-726 JJ denotes additional
T5918 727-730 NN denotes PKA
T5919 731-741 NN denotes inhibitors
T5920 742-746 IN denotes with
T5921 747-751 DT denotes this
T5922 752-755 NN denotes set
T5923 756-758 IN denotes of
T5924 759-770 NN denotes experiments
T5925 772-775 DT denotes The
T5926 776-781 NN denotes TNF-α
T5927 782-795 NN denotes concentration
T5928 796-798 IN denotes in
T5929 799-802 DT denotes the
T5930 803-814 NN denotes supernatant
T5931 815-818 VB denotes was
T5932 819-827 VB denotes measured
T5933 828-842 RB denotes quantitatively
T5934 843-845 IN denotes by
T5935 846-851 NN denotes ELISA
T5936 853-856 DT denotes The
T5937 857-864 NN denotes results
T5938 865-868 VB denotes are
T5939 869-878 VB denotes expressed
T5940 879-881 IN denotes in
T5941 882-887 NN denotes pg/mL
R4831 T5799 T5800 arg1Of Role,of
R4832 T5799 T5802 arg1Of Role,on
R4833 T5801 T5800 arg2Of PKA,of
R4834 T5807 T5802 arg2Of production,on
R4835 T5807 T5803 arg1Of production,LPS-induced
R4836 T5807 T5804 arg1Of production,mononuclear
R4837 T5807 T5805 arg1Of production,cell
R4838 T5807 T5806 arg1Of production,TNF-α
R4839 T5809 T5808 arg1Of evaluate,To
R4840 T5809 T5842 arg1Of evaluate,was
R4841 T5809 T5843 arg2Of evaluate,utilized
R4842 T5811 T5810 arg1Of role,the
R4843 T5811 T5812 arg1Of role,of
R4844 T5811 T5814 arg1Of role,on
R4845 T5811 T5817 arg1Of role,in
R4846 T5811 T5820 arg1Of role,and
R4847 T5813 T5812 arg2Of PKA,of
R4848 T5816 T5814 arg2Of production,on
R4849 T5816 T5815 arg1Of production,TNF-α
R4850 T5819 T5817 arg2Of cells,in
R4851 T5819 T5818 arg1Of cells,mononuclear
R4852 T5820 T5809 arg2Of and,evaluate
R4853 T5822 T5820 arg2Of involvement,and
R4854 T5822 T5821 arg1Of involvement,its
R4855 T5822 T5823 arg1Of involvement,in
R4856 T5825 T5823 arg2Of attenuation,in
R4857 T5825 T5824 arg1Of attenuation,the
R4858 T5825 T5826 arg1Of attenuation,of
R4859 T5829 T5826 arg2Of production,of
R4860 T5829 T5827 arg1Of production,LPS-induced
R4861 T5829 T5828 arg1Of production,TNF-α
R4862 T5829 T5830 arg2Of production,observed
R4863 T5830 T5831 arg1Of observed,following
R4864 T5833 T5831 arg2Of treatment,following
R4865 T5833 T5832 arg1Of treatment,PTX
R4866 T5833 T5834 arg1Of treatment,","
R4867 T5833 T5836 arg1Of treatment,","
R4868 T5835 T5834 arg2Of H89,","
R4869 T5840 T5836 arg2Of inhibitor,","
R4870 T5840 T5837 arg1Of inhibitor,a
R4871 T5840 T5838 arg1Of inhibitor,specific
R4872 T5840 T5839 arg1Of inhibitor,PKA
R4873 T5843 T5841 arg1Of utilized,","
R4874 T5843 T5842 arg2Of utilized,was
R4875 T5846 T5844 arg2Of cells,Isolated
R4876 T5846 T5845 arg1Of cells,mononuclear
R4877 T5846 T5847 arg1Of cells,were
R4878 T5846 T5848 arg2Of cells,incubated
R4879 T5848 T5847 arg2Of incubated,were
R4880 T5848 T5849 arg1Of incubated,according
R4881 T5850 T5849 arg2Of to,according
R4882 T5853 T5850 arg2Of groups,to
R4883 T5853 T5851 arg1Of groups,the
R4884 T5853 T5852 arg1Of groups,treatment
R4885 T5853 T5854 arg2Of groups,described
R4886 T5854 T5855 arg1Of described,above
R4887 T5854 T5856 arg1Of described,in
R4888 T5858 T5859 arg1Of presence,and
R4889 T5859 T5856 arg2Of and,in
R4890 T5859 T5857 arg1Of and,the
R4891 T5859 T5861 arg1Of and,of
R4892 T5859 T5863 arg1Of and,with
R4893 T5860 T5859 arg2Of absence,and
R4894 T5862 T5861 arg2Of pretreatment,of
R4895 T5864 T5863 arg2Of H89,with
R4896 T5864 T5865 arg1Of H89,(
R4897 T5864 T5869 arg1Of H89,for
R4898 T5867 T5865 arg2Of μM,(
R4899 T5867 T5866 arg1Of μM,10
R4900 T5868 T5865 arg3Of ),(
R4901 T5871 T5869 arg2Of hour,for
R4902 T5871 T5870 arg1Of hour,1
R4903 T5871 T5872 arg1Of hour,at
R4904 T5873 T5872 arg2Of 37ºC,at
R4905 T5875 T5874 arg1Of dose,The
R4906 T5875 T5876 arg1Of dose,of
R4907 T5875 T5878 arg1Of dose,was
R4908 T5875 T5879 arg2Of dose,chosen
R4909 T5877 T5876 arg2Of H89,of
R4910 T5879 T5878 arg2Of chosen,was
R4911 T5879 T5880 modOf chosen,based
R4912 T5879 T5881 arg1Of chosen,on
R4913 T5883 T5881 arg2Of work,on
R4914 T5883 T5882 arg1Of work,previous
R4915 T5883 T5884 arg1Of work,which
R4916 T5883 T5885 arg1Of work,demonstrated
R4917 T5886 T5887 arg1Of specific,and
R4918 T5888 T5887 arg2Of complete,and
R4919 T5889 T5885 arg2Of inhibition,demonstrated
R4920 T5889 T5886 arg1Of inhibition,specific
R4921 T5889 T5888 arg1Of inhibition,complete
R4922 T5889 T5890 arg1Of inhibition,of
R4923 T5891 T5890 arg2Of PKA,of
R4924 T5894 T5892 arg2Of concentration.10,at
R4925 T5894 T5893 arg1Of concentration.10,this
R4926 T5894 T5895 arg1Of concentration.10,Since
R4927 T5897 T5896 arg1Of activity,the
R4928 T5897 T5898 arg1Of activity,of
R4929 T5897 T5901 arg1Of activity,is
R4930 T5897 T5903 arg1Of activity,specific
R4931 T5897 T5905 arg1Of activity,consistent
R4932 T5900 T5898 arg2Of inhibitor,of
R4933 T5900 T5899 arg1Of inhibitor,this
R4934 T5901 T5895 arg2Of is,Since
R4935 T5903 T5904 arg1Of specific,and
R4936 T5904 T5901 arg2Of and,is
R4937 T5904 T5902 arg1Of and,both
R4938 T5904 T5906 arg1Of and,at
R4939 T5905 T5904 arg2Of consistent,and
R4940 T5909 T5906 arg2Of dose,at
R4941 T5909 T5907 arg1Of dose,this
R4942 T5909 T5908 arg2Of dose,specified
R4943 T5911 T5912 arg1Of we,did
R4944 T5911 T5914 arg1Of we,include
R4945 T5914 T5885 arg3Of include,demonstrated
R4946 T5914 T5892 arg1Of include,at
R4947 T5914 T5910 arg1Of include,","
R4948 T5914 T5912 arg2Of include,did
R4949 T5914 T5913 arg1Of include,not
R4950 T5915 T5914 arg2Of experiments,include
R4951 T5915 T5916 arg1Of experiments,with
R4952 T5919 T5916 arg2Of inhibitors,with
R4953 T5919 T5917 arg1Of inhibitors,additional
R4954 T5919 T5918 arg1Of inhibitors,PKA
R4955 T5919 T5920 arg1Of inhibitors,with
R4956 T5922 T5920 arg2Of set,with
R4957 T5922 T5921 arg1Of set,this
R4958 T5922 T5923 arg1Of set,of
R4959 T5924 T5923 arg2Of experiments,of
R4960 T5927 T5925 arg1Of concentration,The
R4961 T5927 T5926 arg1Of concentration,TNF-α
R4962 T5927 T5928 arg1Of concentration,in
R4963 T5927 T5931 arg1Of concentration,was
R4964 T5927 T5932 arg2Of concentration,measured
R4965 T5930 T5928 arg2Of supernatant,in
R4966 T5930 T5929 arg1Of supernatant,the
R4967 T5932 T5931 arg2Of measured,was
R4968 T5932 T5933 arg1Of measured,quantitatively
R4969 T5935 T5932 arg1Of ELISA,measured
R4970 T5935 T5934 arg2Of ELISA,by
R4971 T5937 T5936 arg1Of results,The
R4972 T5937 T5938 arg1Of results,are
R4973 T5937 T5939 arg2Of results,expressed
R4974 T5939 T5938 arg2Of expressed,are
R4975 T5939 T5940 arg1Of expressed,in
R4976 T5941 T5940 arg2Of pg/mL,in

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5650 0-4 NN denotes Role
T5651 5-7 IN denotes of
T5652 8-11 NNP denotes PKA
T5653 12-14 IN denotes on
T5654 15-26 JJ denotes LPS-induced
T5655 27-38 NN denotes mononuclear
T5656 39-43 NN denotes cell
T5657 44-49 JJ denotes TNF-α
T5658 50-60 NN denotes production
T5659 61-63 TO denotes To
T5660 64-72 VB denotes evaluate
T5661 73-76 DT denotes the
T5662 77-81 NN denotes role
T5663 82-84 IN denotes of
T5664 85-88 NNP denotes PKA
T5665 89-91 IN denotes on
T5666 92-97 JJ denotes TNF-α
T5667 98-108 NN denotes production
T5668 109-111 IN denotes in
T5669 112-123 NN denotes mononuclear
T5670 124-129 NNS denotes cells
T5671 130-133 CC denotes and
T5672 134-137 PRP$ denotes its
T5673 138-149 NN denotes involvement
T5674 150-152 IN denotes in
T5675 153-156 DT denotes the
T5676 157-168 NN denotes attenuation
T5677 169-171 IN denotes of
T5678 172-183 JJ denotes LPS-induced
T5679 184-189 JJ denotes TNF-α
T5680 190-200 NN denotes production
T5681 201-209 VBD denotes observed
T5682 210-219 VBG denotes following
T5683 220-223 NNP denotes PTX
T5684 224-233 NN denotes treatment
T5685 233-234 , denotes ,
T5686 235-238 NNP denotes H89
T5687 238-239 , denotes ,
T5688 240-241 DT denotes a
T5689 242-250 JJ denotes specific
T5690 251-254 NNP denotes PKA
T5691 255-264 NN denotes inhibitor
T5692 264-265 , denotes ,
T5693 266-269 VBD denotes was
T5694 270-278 VBN denotes utilized
T5695 278-279 . denotes .
T5696 280-288 VBN denotes Isolated
T5697 289-300 NN denotes mononuclear
T5698 301-306 NNS denotes cells
T5699 307-311 VBD denotes were
T5700 312-321 VBN denotes incubated
T5701 322-331 VBG denotes according
T5702 332-334 TO denotes to
T5703 335-338 DT denotes the
T5704 339-348 NN denotes treatment
T5705 349-355 NNS denotes groups
T5706 356-365 VBN denotes described
T5707 366-371 IN denotes above
T5708 372-374 IN denotes in
T5709 375-378 DT denotes the
T5710 379-387 NN denotes presence
T5711 388-391 CC denotes and
T5712 392-399 NN denotes absence
T5713 400-402 IN denotes of
T5714 403-415 NN denotes pretreatment
T5715 416-420 IN denotes with
T5716 421-424 NNP denotes H89
T5717 425-426 -LRB- denotes (
T5718 426-428 CD denotes 10
T5719 429-431 NNP denotes μM
T5720 431-432 -RRB- denotes )
T5721 433-436 IN denotes for
T5722 437-438 CD denotes 1
T5723 439-443 NN denotes hour
T5724 444-446 IN denotes at
T5725 447-451 NNP denotes 37ºC
T5726 451-452 . denotes .
T5727 453-456 DT denotes The
T5728 457-461 NN denotes dose
T5729 462-464 IN denotes of
T5730 465-468 NNP denotes H89
T5731 469-472 VBD denotes was
T5732 473-479 VBN denotes chosen
T5733 480-485 VBN denotes based
T5734 486-488 IN denotes on
T5735 489-497 JJ denotes previous
T5736 498-502 NN denotes work
T5737 503-508 WDT denotes which
T5738 509-521 VBD denotes demonstrated
T5739 522-530 JJ denotes specific
T5740 531-534 CC denotes and
T5741 535-543 JJ denotes complete
T5742 544-554 NN denotes inhibition
T5743 555-557 IN denotes of
T5744 558-561 NNP denotes PKA
T5745 562-564 IN denotes at
T5746 565-569 DT denotes this
T5747 570-583 NN denotes concentration
T5748 583-586 CD denotes .10
T5749 587-592 IN denotes Since
T5750 593-596 DT denotes the
T5751 597-605 NN denotes activity
T5752 606-608 IN denotes of
T5753 609-613 DT denotes this
T5754 614-623 NN denotes inhibitor
T5755 624-626 VBZ denotes is
T5756 627-631 DT denotes both
T5757 632-640 JJ denotes specific
T5758 641-644 CC denotes and
T5759 645-655 JJ denotes consistent
T5760 656-658 IN denotes at
T5761 659-663 DT denotes this
T5762 664-673 VBN denotes specified
T5763 674-678 NN denotes dose
T5764 678-679 , denotes ,
T5765 680-682 PRP denotes we
T5766 683-686 VBD denotes did
T5767 687-690 RB denotes not
T5768 691-698 VB denotes include
T5769 699-710 NNS denotes experiments
T5770 711-715 IN denotes with
T5771 716-726 JJ denotes additional
T5772 727-730 NNP denotes PKA
T5773 731-741 NNS denotes inhibitors
T5774 742-746 IN denotes with
T5775 747-751 DT denotes this
T5776 752-755 NN denotes set
T5777 756-758 IN denotes of
T5778 759-770 NNS denotes experiments
T5779 770-771 . denotes .
T5780 772-775 DT denotes The
T5781 776-781 JJ denotes TNF-α
T5782 782-795 NN denotes concentration
T5783 796-798 IN denotes in
T5784 799-802 DT denotes the
T5785 803-814 NN denotes supernatant
T5786 815-818 VBD denotes was
T5787 819-827 VBN denotes measured
T5788 828-842 RB denotes quantitatively
T5789 843-845 IN denotes by
T5790 846-851 NNP denotes ELISA
T5791 851-852 . denotes .
T5792 853-856 DT denotes The
T5793 857-864 NNS denotes results
T5794 865-868 VBP denotes are
T5795 869-878 VBN denotes expressed
T5796 879-881 IN denotes in
T5797 882-887 NNP denotes pg/mL
T5798 887-888 . denotes .
R4682 T5650 T5694 nsubjpass Role,utilized
R4683 T5651 T5650 prep of,Role
R4684 T5652 T5651 pobj PKA,of
R4685 T5653 T5650 prep on,Role
R4686 T5654 T5656 amod LPS-induced,cell
R4687 T5655 T5656 compound mononuclear,cell
R4688 T5656 T5653 pobj cell,on
R4689 T5657 T5658 amod TNF-α,production
R4690 T5658 T5660 dative production,evaluate
R4691 T5659 T5660 aux To,evaluate
R4692 T5660 T5650 advcl evaluate,Role
R4693 T5661 T5662 det the,role
R4694 T5662 T5660 dobj role,evaluate
R4695 T5663 T5662 prep of,role
R4696 T5664 T5663 pobj PKA,of
R4697 T5665 T5662 prep on,role
R4698 T5666 T5667 amod TNF-α,production
R4699 T5667 T5665 pobj production,on
R4700 T5668 T5667 prep in,production
R4701 T5669 T5670 amod mononuclear,cells
R4702 T5670 T5668 pobj cells,in
R4703 T5671 T5670 cc and,cells
R4704 T5672 T5673 poss its,involvement
R4705 T5673 T5662 conj involvement,role
R4706 T5674 T5673 prep in,involvement
R4707 T5675 T5676 det the,attenuation
R4708 T5676 T5674 pobj attenuation,in
R4709 T5677 T5676 prep of,attenuation
R4710 T5678 T5680 amod LPS-induced,production
R4711 T5679 T5680 compound TNF-α,production
R4712 T5680 T5677 pobj production,of
R4713 T5681 T5694 ccomp observed,utilized
R4714 T5682 T5681 prep following,observed
R4715 T5683 T5684 compound PTX,treatment
R4716 T5684 T5682 pobj treatment,following
R4717 T5685 T5684 punct ",",treatment
R4718 T5686 T5694 nsubjpass H89,utilized
R4719 T5687 T5686 punct ",",H89
R4720 T5688 T5691 det a,inhibitor
R4721 T5689 T5691 amod specific,inhibitor
R4722 T5690 T5691 compound PKA,inhibitor
R4723 T5691 T5686 appos inhibitor,H89
R4724 T5692 T5694 punct ",",utilized
R4725 T5693 T5694 auxpass was,utilized
R4726 T5694 T5694 ROOT utilized,utilized
R4727 T5695 T5694 punct .,utilized
R4728 T5696 T5698 amod Isolated,cells
R4729 T5697 T5698 compound mononuclear,cells
R4730 T5698 T5700 nsubjpass cells,incubated
R4731 T5699 T5700 auxpass were,incubated
R4732 T5700 T5700 ROOT incubated,incubated
R4733 T5701 T5700 prep according,incubated
R4734 T5702 T5701 prep to,according
R4735 T5703 T5705 det the,groups
R4736 T5704 T5705 compound treatment,groups
R4737 T5705 T5702 pobj groups,to
R4738 T5706 T5705 acl described,groups
R4739 T5707 T5706 advmod above,described
R4740 T5708 T5706 prep in,described
R4741 T5709 T5710 det the,presence
R4742 T5710 T5708 pobj presence,in
R4743 T5711 T5710 cc and,presence
R4744 T5712 T5710 conj absence,presence
R4745 T5713 T5712 prep of,absence
R4746 T5714 T5713 pobj pretreatment,of
R4747 T5715 T5706 prep with,described
R4748 T5716 T5715 pobj H89,with
R4749 T5717 T5719 punct (,μM
R4750 T5718 T5719 nummod 10,μM
R4751 T5719 T5716 appos μM,H89
R4752 T5720 T5701 punct ),according
R4753 T5721 T5700 prep for,incubated
R4754 T5722 T5723 nummod 1,hour
R4755 T5723 T5721 pobj hour,for
R4756 T5724 T5700 prep at,incubated
R4757 T5725 T5724 pobj 37ºC,at
R4758 T5726 T5700 punct .,incubated
R4759 T5727 T5728 det The,dose
R4760 T5728 T5732 nsubjpass dose,chosen
R4761 T5729 T5728 prep of,dose
R4762 T5730 T5729 pobj H89,of
R4763 T5731 T5732 auxpass was,chosen
R4764 T5732 T5732 ROOT chosen,chosen
R4765 T5733 T5732 prep based,chosen
R4766 T5734 T5733 prep on,based
R4767 T5735 T5736 amod previous,work
R4768 T5736 T5734 pobj work,on
R4769 T5737 T5738 nsubj which,demonstrated
R4770 T5738 T5736 relcl demonstrated,work
R4771 T5739 T5742 amod specific,inhibition
R4772 T5740 T5739 cc and,specific
R4773 T5741 T5739 conj complete,specific
R4774 T5742 T5738 dobj inhibition,demonstrated
R4775 T5743 T5742 prep of,inhibition
R4776 T5744 T5743 pobj PKA,of
R4777 T5745 T5738 prep at,demonstrated
R4778 T5746 T5747 det this,concentration
R4779 T5747 T5745 pobj concentration,at
R4780 T5748 T5747 nummod .10,concentration
R4781 T5749 T5755 mark Since,is
R4782 T5750 T5751 det the,activity
R4783 T5751 T5749 pobj activity,Since
R4784 T5752 T5751 prep of,activity
R4785 T5753 T5754 det this,inhibitor
R4786 T5754 T5752 pobj inhibitor,of
R4787 T5755 T5768 advcl is,include
R4788 T5756 T5757 preconj both,specific
R4789 T5757 T5755 acomp specific,is
R4790 T5758 T5757 cc and,specific
R4791 T5759 T5757 conj consistent,specific
R4792 T5760 T5759 prep at,consistent
R4793 T5761 T5763 det this,dose
R4794 T5762 T5763 amod specified,dose
R4795 T5763 T5760 pobj dose,at
R4796 T5764 T5768 punct ",",include
R4797 T5765 T5768 nsubj we,include
R4798 T5766 T5768 aux did,include
R4799 T5767 T5768 neg not,include
R4800 T5768 T5732 advcl include,chosen
R4801 T5769 T5768 dobj experiments,include
R4802 T5770 T5769 prep with,experiments
R4803 T5771 T5773 amod additional,inhibitors
R4804 T5772 T5773 compound PKA,inhibitors
R4805 T5773 T5770 pobj inhibitors,with
R4806 T5774 T5769 prep with,experiments
R4807 T5775 T5776 det this,set
R4808 T5776 T5774 pobj set,with
R4809 T5777 T5776 prep of,set
R4810 T5778 T5777 pobj experiments,of
R4811 T5779 T5768 punct .,include
R4812 T5780 T5782 det The,concentration
R4813 T5781 T5782 amod TNF-α,concentration
R4814 T5782 T5787 nsubjpass concentration,measured
R4815 T5783 T5782 prep in,concentration
R4816 T5784 T5785 det the,supernatant
R4817 T5785 T5783 pobj supernatant,in
R4818 T5786 T5787 auxpass was,measured
R4819 T5787 T5787 ROOT measured,measured
R4820 T5788 T5787 advmod quantitatively,measured
R4821 T5789 T5787 agent by,measured
R4822 T5790 T5789 pobj ELISA,by
R4823 T5791 T5787 punct .,measured
R4824 T5792 T5793 det The,results
R4825 T5793 T5795 nsubjpass results,expressed
R4826 T5794 T5795 auxpass are,expressed
R4827 T5795 T5795 ROOT expressed,expressed
R4828 T5796 T5795 prep in,expressed
R4829 T5797 T5796 pobj pg/mL,in
R4830 T5798 T5795 punct .,expressed

GO-BP

Id Subject Object Predicate Lexical cue
T5960 8-11 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T5961 85-88 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T5962 251-254 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T5963 558-561 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T5964 727-730 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T5965 44-60 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T5966 92-108 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T5967 184-200 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T5968 44-60 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production
T5969 92-108 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production
T5970 184-200 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production

GO-MF

Id Subject Object Predicate Lexical cue
T5971 8-11 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T5972 85-88 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T5973 251-254 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T5974 558-561 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T5975 727-730 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA

GO-CC

Id Subject Object Predicate Lexical cue
T5978 251-254 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA
T5979 558-561 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA
T5980 727-730 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA
T5981 39-43 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T5982 124-129 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T5983 301-306 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T5976 8-11 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA
T5977 85-88 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA

sentences

Id Subject Object Predicate Lexical cue
T5643 0-60 Sentence denotes Role of PKA on LPS-induced mononuclear cell TNF-α production
T5644 61-279 Sentence denotes To evaluate the role of PKA on TNF-α production in mononuclear cells and its involvement in the attenuation of LPS-induced TNF-α production observed following PTX treatment, H89, a specific PKA inhibitor, was utilized.
T5645 280-452 Sentence denotes Isolated mononuclear cells were incubated according to the treatment groups described above in the presence and absence of pretreatment with H89 (10 μM) for 1 hour at 37ºC.
T5646 453-771 Sentence denotes The dose of H89 was chosen based on previous work which demonstrated specific and complete inhibition of PKA at this concentration.10 Since the activity of this inhibitor is both specific and consistent at this specified dose, we did not include experiments with additional PKA inhibitors with this set of experiments.
T5647 772-852 Sentence denotes The TNF-α concentration in the supernatant was measured quantitatively by ELISA.
T5648 853-888 Sentence denotes The results are expressed in pg/mL.
T93 0-60 Sentence denotes Role of PKA on LPS-induced mononuclear cell TNF-α production
T94 61-279 Sentence denotes To evaluate the role of PKA on TNF-α production in mononuclear cells and its involvement in the attenuation of LPS-induced TNF-α production observed following PTX treatment, H89, a specific PKA inhibitor, was utilized.
T95 280-452 Sentence denotes Isolated mononuclear cells were incubated according to the treatment groups described above in the presence and absence of pretreatment with H89 (10 μM) for 1 hour at 37ºC.
T96 453-771 Sentence denotes The dose of H89 was chosen based on previous work which demonstrated specific and complete inhibition of PKA at this concentration.10 Since the activity of this inhibitor is both specific and consistent at this specified dose, we did not include experiments with additional PKA inhibitors with this set of experiments.
T97 772-852 Sentence denotes The TNF-α concentration in the supernatant was measured quantitatively by ELISA.
T98 853-888 Sentence denotes The results are expressed in pg/mL.

events-check-again

Id Subject Object Predicate Lexical cue
T6040 0-4 Regulation denotes Role
T6041 19-26 Positive_regulation denotes induced
T6042 44-49 Protein denotes TNF-α
T6043 50-60 Gene_expression denotes production
T6044 77-81 Regulation denotes role
T6045 92-97 Protein denotes TNF-α
T6046 98-108 Gene_expression denotes production
T6047 138-149 Regulation denotes involvement
T6048 157-168 Negative_regulation denotes attenuation
T6049 176-183 Positive_regulation denotes induced
T6050 184-189 Protein denotes TNF-α
T6051 190-200 Gene_expression denotes production
T6052 776-781 Protein denotes TNF-α
R5017 T6041 T6040 themeOf induced,Role
R5018 T6042 T6043 themeOf TNF-α,production
R5019 T6043 T6041 themeOf production,induced
R5020 T6045 T6046 themeOf TNF-α,production
R5021 T6046 T6044 themeOf production,role
R5022 T6048 T6047 themeOf attenuation,involvement
R5023 T6049 T6048 themeOf induced,attenuation
R5024 T6050 T6051 themeOf TNF-α,production
R5025 T6051 T6049 themeOf production,induced

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5984 8-11 Protein denotes PKA
T5985 44-49 Protein denotes TNF-α
T5986 50-60 Gene_expression denotes production
T5987 0-4 Regulation denotes Role
T5988 15-26 Positive_regulation denotes LPS-induced
T5989 85-88 Protein denotes PKA
T5990 92-97 Protein denotes TNF-α
T5991 184-189 Protein denotes TNF-α
T5992 251-254 Protein denotes PKA
T5993 98-108 Gene_expression denotes production
T5994 190-200 Gene_expression denotes production
T5995 255-264 Negative_regulation denotes inhibitor
T5996 77-81 Regulation denotes role
T5997 157-168 Negative_regulation denotes attenuation
T5998 138-149 Regulation denotes involvement
T5999 558-561 Protein denotes PKA
T6000 727-730 Protein denotes PKA
T6001 544-554 Negative_regulation denotes inhibition
T6002 731-741 Negative_regulation denotes inhibitors
T6003 776-781 Protein denotes TNF-α
R4980 T5984 T5987 causeOf PKA,Role
R4981 T5985 T5986 themeOf TNF-α,production
R4982 T5986 T5987 themeOf production,Role
R4983 T5986 T5988 themeOf production,LPS-induced
R4984 T5989 T5996 causeOf PKA,role
R4985 T5990 T5993 themeOf TNF-α,production
R4986 T5991 T5994 themeOf TNF-α,production
R4987 T5992 T5995 themeOf PKA,inhibitor
R4988 T5993 T5996 themeOf production,role
R4989 T5994 T5997 themeOf production,attenuation
R4990 T5997 T5998 themeOf attenuation,involvement
R4991 T5999 T6001 themeOf PKA,inhibition
R4992 T6000 T6002 themeOf PKA,inhibitors

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5942 44-47 P01375 denotes TNF
T5943 44-49 P01375 denotes TNF-α
T5944 92-95 P01375 denotes TNF
T5945 92-97 P01375 denotes TNF-α
T5946 184-187 P01375 denotes TNF
T5947 184-189 P01375 denotes TNF-α
T5948 776-779 P01375 denotes TNF
T5949 776-781 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T5611 19-26 Positive_regulation denotes induced
T5612 44-49 Protein denotes TNF-α
T5613 50-60 Gene_expression denotes production
T5614 77-81 Regulation denotes role
T5615 92-97 Protein denotes TNF-α
T5616 98-108 Gene_expression denotes production
T5617 176-183 Positive_regulation denotes induced
T5618 184-189 Protein denotes TNF-α
T5619 190-200 Gene_expression denotes production
T5620 210-219 Positive_regulation denotes following
T5621 776-781 Protein denotes TNF-α
R4660 T5612 T5613 themeOf TNF-α,production
R4661 T5613 T5611 themeOf production,induced
R4662 T5615 T5616 themeOf TNF-α,production
R4663 T5617 T5620 themeOf induced,following
R4664 T5618 T5619 themeOf TNF-α,production
R4665 T5619 T5620 themeOf production,following
R4666 T5619 T5617 themeOf production,induced