PMC:2664230 / 1041-1300 JSONTXT

{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T71","span":{"begin":19,"end":24},"obj":"Protein"},{"id":"T72","span":{"begin":239,"end":245},"obj":"Negative_regulation"},{"id":"T73","span":{"begin":239,"end":245},"obj":"Negative_regulation"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"ility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I"}

{"project":"pmc-enju-pas","denotations":[{"id":"T607","span":{"begin":6,"end":11},"obj":"NN"},{"id":"T608","span":{"begin":12,"end":17},"obj":"NN"},{"id":"T609","span":{"begin":19,"end":24},"obj":"NN"},{"id":"T610","span":{"begin":25,"end":31},"obj":"NN"},{"id":"T611","span":{"begin":32,"end":36},"obj":"VB"},{"id":"T612","span":{"begin":37,"end":47},"obj":"VB"},{"id":"T613","span":{"begin":48,"end":50},"obj":"IN"},{"id":"T614","span":{"begin":51,"end":54},"obj":"DT"},{"id":"T615","span":{"begin":55,"end":66},"obj":"NN"},{"id":"T616","span":{"begin":67,"end":69},"obj":"IN"},{"id":"T617","span":{"begin":70,"end":80},"obj":"VB"},{"id":"T618","span":{"begin":81,"end":86},"obj":"NN"},{"id":"T619","span":{"begin":87,"end":89},"obj":"IN"},{"id":"T620","span":{"begin":90,"end":93},"obj":"DT"},{"id":"T621","span":{"begin":94,"end":102},"obj":"NN"},{"id":"T622","span":{"begin":103,"end":106},"obj":"CC"},{"id":"T623","span":{"begin":107,"end":114},"obj":"NN"},{"id":"T624","span":{"begin":115,"end":122},"obj":"NN"},{"id":"T625","span":{"begin":123,"end":129},"obj":"NN"},{"id":"T626","span":{"begin":130,"end":131},"obj":"NN"},{"id":"T627","span":{"begin":132,"end":142},"obj":"NN"},{"id":"T628","span":{"begin":143,"end":145},"obj":"IN"},{"id":"T629","span":{"begin":146,"end":148},"obj":"DT"},{"id":"T630","span":{"begin":149,"end":162},"obj":"JJ"},{"id":"T631","span":{"begin":163,"end":176},"obj":"JJ"},{"id":"T632","span":{"begin":177,"end":182},"obj":"NN"},{"id":"T633","span":{"begin":183,"end":184},"obj":"-LRB-"},{"id":"T634","span":{"begin":184,"end":189},"obj":"NN"},{"id":"T635","span":{"begin":189,"end":190},"obj":"-RRB-"},{"id":"T636","span":{"begin":193,"end":200},"obj":"NN"},{"id":"T637","span":{"begin":201,"end":204},"obj":"NN"},{"id":"T638","span":{"begin":205,"end":208},"obj":"VB"},{"id":"T639","span":{"begin":209,"end":221},"obj":"VB"},{"id":"T640","span":{"begin":222,"end":224},"obj":"TO"},{"id":"T641","span":{"begin":225,"end":238},"obj":"RB"},{"id":"T642","span":{"begin":239,"end":245},"obj":"VB"},{"id":"T643","span":{"begin":246,"end":257},"obj":"JJ"}],"relations":[{"id":"R499","pred":"arg1Of","subj":"T608","obj":"T607"},{"id":"R500","pred":"arg1Of","subj":"T610","obj":"T609"},{"id":"R501","pred":"arg1Of","subj":"T610","obj":"T611"},{"id":"R502","pred":"arg2Of","subj":"T610","obj":"T612"},{"id":"R503","pred":"arg2Of","subj":"T612","obj":"T611"},{"id":"R504","pred":"arg1Of","subj":"T612","obj":"T613"},{"id":"R505","pred":"arg1Of","subj":"T612","obj":"T619"},{"id":"R506","pred":"arg2Of","subj":"T615","obj":"T613"},{"id":"R507","pred":"arg1Of","subj":"T615","obj":"T614"},{"id":"R508","pred":"arg1Of","subj":"T615","obj":"T616"},{"id":"R509","pred":"arg2Of","subj":"T618","obj":"T616"},{"id":"R510","pred":"arg2Of","subj":"T618","obj":"T617"},{"id":"R511","pred":"arg1Of","subj":"T621","obj":"T622"},{"id":"R512","pred":"arg2Of","subj":"T623","obj":"T622"},{"id":"R513","pred":"arg2Of","subj":"T627","obj":"T619"},{"id":"R514","pred":"arg1Of","subj":"T627","obj":"T620"},{"id":"R515","pred":"arg1Of","subj":"T627","obj":"T621"},{"id":"R516","pred":"arg1Of","subj":"T627","obj":"T623"},{"id":"R517","pred":"arg1Of","subj":"T627","obj":"T624"},{"id":"R518","pred":"arg1Of","subj":"T627","obj":"T625"},{"id":"R519","pred":"arg1Of","subj":"T627","obj":"T626"},{"id":"R520","pred":"arg1Of","subj":"T627","obj":"T628"},{"id":"R521","pred":"arg2Of","subj":"T632","obj":"T628"},{"id":"R522","pred":"arg1Of","subj":"T632","obj":"T629"},{"id":"R523","pred":"arg1Of","subj":"T632","obj":"T630"},{"id":"R524","pred":"arg1Of","subj":"T632","obj":"T631"},{"id":"R525","pred":"arg1Of","subj":"T632","obj":"T633"},{"id":"R526","pred":"arg2Of","subj":"T634","obj":"T633"},{"id":"R527","pred":"arg3Of","subj":"T635","obj":"T633"},{"id":"R528","pred":"arg1Of","subj":"T637","obj":"T638"},{"id":"R529","pred":"arg2Of","subj":"T637","obj":"T639"},{"id":"R530","pred":"arg1Of","subj":"T637","obj":"T642"},{"id":"R531","pred":"arg2Of","subj":"T639","obj":"T638"},{"id":"R532","pred":"arg3Of","subj":"T642","obj":"T639"},{"id":"R533","pred":"arg1Of","subj":"T642","obj":"T640"},{"id":"R534","pred":"arg1Of","subj":"T642","obj":"T641"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"ility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I"}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T294","span":{"begin":6,"end":11},"obj":"NN"},{"id":"T295","span":{"begin":12,"end":17},"obj":"NN"},{"id":"T296","span":{"begin":17,"end":18},"obj":"."},{"id":"T297","span":{"begin":19,"end":24},"obj":"JJ"},{"id":"T298","span":{"begin":25,"end":31},"obj":"NNS"},{"id":"T299","span":{"begin":32,"end":36},"obj":"VBD"},{"id":"T300","span":{"begin":37,"end":47},"obj":"VBN"},{"id":"T301","span":{"begin":48,"end":50},"obj":"IN"},{"id":"T302","span":{"begin":51,"end":54},"obj":"DT"},{"id":"T303","span":{"begin":55,"end":66},"obj":"NN"},{"id":"T304","span":{"begin":67,"end":69},"obj":"IN"},{"id":"T305","span":{"begin":70,"end":80},"obj":"VBN"},{"id":"T306","span":{"begin":81,"end":86},"obj":"NNS"},{"id":"T307","span":{"begin":87,"end":89},"obj":"IN"},{"id":"T308","span":{"begin":90,"end":93},"obj":"DT"},{"id":"T309","span":{"begin":94,"end":102},"obj":"NN"},{"id":"T310","span":{"begin":103,"end":106},"obj":"CC"},{"id":"T311","span":{"begin":107,"end":114},"obj":"NN"},{"id":"T312","span":{"begin":115,"end":122},"obj":"NNP"},{"id":"T313","span":{"begin":123,"end":129},"obj":"NN"},{"id":"T314","span":{"begin":130,"end":131},"obj":"DT"},{"id":"T315","span":{"begin":132,"end":142},"obj":"NN"},{"id":"T316","span":{"begin":143,"end":145},"obj":"IN"},{"id":"T317","span":{"begin":146,"end":148},"obj":"DT"},{"id":"T318","span":{"begin":149,"end":162},"obj":"JJ"},{"id":"T319","span":{"begin":163,"end":176},"obj":"JJ"},{"id":"T320","span":{"begin":177,"end":182},"obj":"NN"},{"id":"T321","span":{"begin":183,"end":184},"obj":"-LRB-"},{"id":"T322","span":{"begin":184,"end":189},"obj":"NNP"},{"id":"T323","span":{"begin":189,"end":190},"obj":"-RRB-"},{"id":"T324","span":{"begin":190,"end":191},"obj":"."},{"id":"T325","span":{"begin":193,"end":200},"obj":"NNS"},{"id":"T326","span":{"begin":201,"end":204},"obj":"VBP"},{"id":"T327","span":{"begin":205,"end":208},"obj":"VBD"},{"id":"T328","span":{"begin":209,"end":221},"obj":"VBN"},{"id":"T329","span":{"begin":222,"end":224},"obj":"TO"},{"id":"T330","span":{"begin":225,"end":238},"obj":"RB"},{"id":"T331","span":{"begin":239,"end":245},"obj":"VB"},{"id":"T332","span":{"begin":246,"end":257},"obj":"JJ"}],"relations":[{"id":"R192","pred":"compound","subj":"T294","obj":"T295"},{"id":"R195","pred":"amod","subj":"T297","obj":"T298"},{"id":"R196","pred":"nsubjpass","subj":"T298","obj":"T300"},{"id":"R197","pred":"auxpass","subj":"T299","obj":"T300"},{"id":"R198","pred":"ROOT","subj":"T300","obj":"T300"},{"id":"R199","pred":"prep","subj":"T301","obj":"T300"},{"id":"R200","pred":"det","subj":"T302","obj":"T303"},{"id":"R201","pred":"pobj","subj":"T303","obj":"T301"},{"id":"R202","pred":"prep","subj":"T304","obj":"T303"},{"id":"R203","pred":"amod","subj":"T305","obj":"T306"},{"id":"R204","pred":"pobj","subj":"T306","obj":"T304"},{"id":"R205","pred":"prep","subj":"T307","obj":"T303"},{"id":"R206","pred":"det","subj":"T308","obj":"T309"},{"id":"R207","pred":"pobj","subj":"T309","obj":"T307"},{"id":"R208","pred":"cc","subj":"T310","obj":"T309"},{"id":"R209","pred":"conj","subj":"T311","obj":"T309"},{"id":"R210","pred":"compound","subj":"T312","obj":"T313"},{"id":"R211","pred":"ROOT","subj":"T313","obj":"T313"},{"id":"R212","pred":"det","subj":"T314","obj":"T315"},{"id":"R213","pred":"ROOT","subj":"T315","obj":"T315"},{"id":"R214","pred":"prep","subj":"T316","obj":"T315"},{"id":"R215","pred":"det","subj":"T317","obj":"T320"},{"id":"R216","pred":"nmod","subj":"T318","obj":"T320"},{"id":"R217","pred":"compound","subj":"T319","obj":"T320"},{"id":"R218","pred":"pobj","subj":"T320","obj":"T316"},{"id":"R219","pred":"punct","subj":"T321","obj":"T320"},{"id":"R220","pred":"appos","subj":"T322","obj":"T320"},{"id":"R221","pred":"punct","subj":"T323","obj":"T320"},{"id":"R222","pred":"punct","subj":"T324","obj":"T315"},{"id":"R223","pred":"compound","subj":"T325","obj":"T326"},{"id":"R224","pred":"nsubjpass","subj":"T326","obj":"T328"},{"id":"R225","pred":"auxpass","subj":"T327","obj":"T328"},{"id":"R226","pred":"ROOT","subj":"T328","obj":"T328"},{"id":"R227","pred":"aux","subj":"T329","obj":"T331"},{"id":"R228","pred":"advmod","subj":"T330","obj":"T331"},{"id":"R229","pred":"xcomp","subj":"T331","obj":"T328"}],"text":"ility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I"}

{"project":"GO-CC","denotations":[{"id":"T883","span":{"begin":81,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"ility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I"}

{"project":"sentences","denotations":[{"id":"T121","span":{"begin":19,"end":191},"obj":"Sentence"},{"id":"T122","span":{"begin":193,"end":200},"obj":"Sentence"},{"id":"T13","span":{"begin":19,"end":191},"obj":"Sentence"},{"id":"T14","span":{"begin":193,"end":200},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"ility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I"}

{"project":"events-check-again","denotations":[{"id":"T901","span":{"begin":19,"end":24},"obj":"Protein"},{"id":"T902","span":{"begin":239,"end":245},"obj":"Negative_regulation"},{"id":"T903","span":{"begin":239,"end":245},"obj":"Negative_regulation"}],"text":"ility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I"}

{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T943","span":{"begin":19,"end":24},"obj":"Protein"},{"id":"T944","span":{"begin":115,"end":131},"obj":"Protein"},{"id":"T945","span":{"begin":132,"end":142},"obj":"Negative_regulation"},{"id":"T946","span":{"begin":201,"end":204},"obj":"Protein"},{"id":"T947","span":{"begin":246,"end":259},"obj":"Protein"},{"id":"T956","span":{"begin":239,"end":245},"obj":"Negative_regulation"}],"relations":[{"id":"R681","pred":"themeOf","subj":"T944","obj":"T945"},{"id":"R682","pred":"causeOf","subj":"T946","obj":"T956"}],"text":"ility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I"}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T786","span":{"begin":19,"end":22},"obj":"P01375"},{"id":"T787","span":{"begin":19,"end":24},"obj":"P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"ility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I"}

{"project":"test2","denotations":[{"id":"T44","span":{"begin":19,"end":24},"obj":"Protein"},{"id":"T45","span":{"begin":239,"end":245},"obj":"Negative_regulation"}],"attributes":[{"id":"M4","pred":"Negation","subj":"T45","obj":"true"}],"text":"ility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I"}