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PMC:2626671 / 29155-29702 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16229 0-10 JJ denotes FACS-based
T16230 11-23 NN denotes cytotoxicity
T16231 24-29 NN denotes assay
T16232 31-33 TO denotes To
T16233 34-41 VB denotes measure
T16234 42-54 NN denotes cytotoxicity
T16235 54-55 -COMMA- denotes ,
T16236 56-59 NN denotes EL4
T16237 60-67 NN denotes thymoma
T16238 68-74 NN denotes target
T16239 75-80 NN denotes cells
T16240 81-85 VB denotes were
T16241 86-92 VB denotes loaded
T16242 93-97 IN denotes with
T16243 98-99 CD denotes 0
T16244 100-102 CC denotes or
T16245 103-104 CD denotes 1
T16246 105-107 NN denotes μM
T16247 108-112 NN denotes Gp33
T16248 113-120 NN denotes peptide
T16249 121-124 IN denotes for
T16250 125-126 CD denotes 2
T16251 127-128 NN denotes h
T16252 129-135 IN denotes before
T16253 136-137 DT denotes a
T16254 138-141 JJ denotes 2-h
T16255 142-154 NN denotes coincubation
T16256 155-159 IN denotes with
T16257 160-163 NN denotes P14
T16258 164-168 JJ denotes CD8+
T16259 169-170 NN denotes T
T16260 171-176 NN denotes cells
T16261 177-179 IN denotes at
T16262 180-183 DT denotes the
T16263 184-202 JJ denotes effector-to-target
T16264 203-209 NN denotes ratios
T16265 210-219 VB denotes indicated
T16266 220-222 IN denotes in
T16267 223-226 DT denotes the
T16268 227-234 NN denotes figures
T16269 235-237 IN denotes in
T16270 238-245 JJ denotes 96-well
T16271 246-258 JJ denotes round-bottom
T16272 259-265 NN denotes plates
T16273 267-272 IN denotes After
T16274 273-276 DT denotes the
T16275 277-289 NN denotes coincubation
T16276 290-296 NN denotes period
T16277 296-297 -COMMA- denotes ,
T16278 298-303 NN denotes cells
T16279 304-308 VB denotes were
T16280 309-316 VB denotes stained
T16281 317-321 IN denotes with
T16282 322-329 NN denotes Annexin
T16283 330-336 NN denotes V–FITC
T16284 337-340 CC denotes and
T16285 341-365 NN denotes anti-CD8–allophycocyanin
T16286 367-371 NN denotes Data
T16287 372-380 NN denotes analysis
T16288 381-384 VB denotes was
T16289 385-394 VB denotes performed
T16290 395-399 IN denotes with
T16291 400-406 NN denotes FlowJo
T16292 407-415 NN denotes software
T16293 416-417 -LRB- denotes (
T16294 417-421 NNP denotes Tree
T16295 422-426 NNP denotes Star
T16296 426-427 -COMMA- denotes ,
T16297 428-432 NNP denotes Inc.
T16298 432-433 -RRB- denotes )
T16299 433-434 -COLON- denotes ;
T16300 435-438 NN denotes EL4
T16301 439-445 NN denotes target
T16302 446-451 NN denotes cells
T16303 452-453 -LRB- denotes (
T16304 453-465 JJ denotes CD8-negative
T16305 466-472 NN denotes events
T16306 472-473 -RRB- denotes )
T16307 474-478 VB denotes were
T16308 479-484 VB denotes gated
T16309 484-485 -COMMA- denotes ,
T16310 486-489 CC denotes and
T16311 490-493 DT denotes the
T16312 494-504 NN denotes percentage
T16313 505-507 IN denotes of
T16314 508-515 NN denotes Annexin
T16315 516-518 JJ denotes V+
T16316 519-525 NN denotes target
T16317 526-531 NN denotes cells
T16318 532-535 VB denotes was
T16319 536-546 VB denotes determined
R12451 T16231 T16229 arg1Of assay,FACS-based
R12452 T16231 T16230 arg1Of assay,cytotoxicity
R12453 T16233 T16232 arg1Of measure,To
R12454 T16234 T16233 arg2Of cytotoxicity,measure
R12455 T16239 T16233 arg1Of cells,measure
R12456 T16239 T16236 arg1Of cells,EL4
R12457 T16239 T16237 arg1Of cells,thymoma
R12458 T16239 T16238 arg1Of cells,target
R12459 T16239 T16240 arg1Of cells,were
R12460 T16239 T16241 arg2Of cells,loaded
R12461 T16241 T16232 modOf loaded,To
R12462 T16241 T16235 arg1Of loaded,","
R12463 T16241 T16240 arg2Of loaded,were
R12464 T16241 T16242 arg1Of loaded,with
R12465 T16241 T16252 arg1Of loaded,before
R12466 T16241 T16261 arg1Of loaded,at
R12467 T16243 T16244 arg1Of 0,or
R12468 T16244 T16246 arg1Of or,μM
R12469 T16245 T16244 arg2Of 1,or
R12470 T16248 T16242 arg2Of peptide,with
R12471 T16248 T16243 arg1Of peptide,0
R12472 T16248 T16245 arg1Of peptide,1
R12473 T16248 T16247 arg1Of peptide,Gp33
R12474 T16248 T16249 arg1Of peptide,for
R12475 T16251 T16249 arg2Of h,for
R12476 T16251 T16250 arg1Of h,2
R12477 T16255 T16252 arg2Of coincubation,before
R12478 T16255 T16253 arg1Of coincubation,a
R12479 T16255 T16254 arg1Of coincubation,2-h
R12480 T16255 T16256 arg1Of coincubation,with
R12481 T16260 T16256 arg2Of cells,with
R12482 T16260 T16257 arg1Of cells,P14
R12483 T16260 T16258 arg1Of cells,CD8+
R12484 T16260 T16259 arg1Of cells,T
R12485 T16264 T16261 arg2Of ratios,at
R12486 T16264 T16262 arg1Of ratios,the
R12487 T16264 T16263 arg1Of ratios,effector-to-target
R12488 T16264 T16265 arg2Of ratios,indicated
R12489 T16265 T16266 arg1Of indicated,in
R12490 T16268 T16266 arg2Of figures,in
R12491 T16268 T16267 arg1Of figures,the
R12492 T16268 T16269 arg1Of figures,in
R12493 T16272 T16269 arg2Of plates,in
R12494 T16272 T16270 arg1Of plates,96-well
R12495 T16272 T16271 arg1Of plates,round-bottom
R12496 T16276 T16273 arg2Of period,After
R12497 T16276 T16274 arg1Of period,the
R12498 T16276 T16275 arg1Of period,coincubation
R12499 T16278 T16279 arg1Of cells,were
R12500 T16278 T16280 arg2Of cells,stained
R12501 T16280 T16273 arg1Of stained,After
R12502 T16280 T16277 arg1Of stained,","
R12503 T16280 T16279 arg2Of stained,were
R12504 T16280 T16281 arg1Of stained,with
R12505 T16283 T16284 arg1Of V–FITC,and
R12506 T16284 T16281 arg2Of and,with
R12507 T16284 T16282 arg1Of and,Annexin
R12508 T16285 T16284 arg2Of anti-CD8–allophycocyanin,and
R12509 T16287 T16286 arg1Of analysis,Data
R12510 T16287 T16288 arg1Of analysis,was
R12511 T16287 T16289 arg2Of analysis,performed
R12512 T16289 T16288 arg2Of performed,was
R12513 T16289 T16290 arg1Of performed,with
R12514 T16289 T16293 arg1Of performed,(
R12515 T16289 T16299 arg1Of performed,;
R12516 T16292 T16290 arg2Of software,with
R12517 T16292 T16291 arg1Of software,FlowJo
R12518 T16295 T16293 arg2Of Star,(
R12519 T16295 T16294 arg1Of Star,Tree
R12520 T16295 T16296 arg1Of Star,","
R12521 T16297 T16296 arg2Of Inc.,","
R12522 T16298 T16293 arg3Of ),(
R12523 T16302 T16300 arg1Of cells,EL4
R12524 T16302 T16301 arg1Of cells,target
R12525 T16302 T16303 arg1Of cells,(
R12526 T16302 T16307 arg1Of cells,were
R12527 T16302 T16308 arg2Of cells,gated
R12528 T16305 T16303 arg2Of events,(
R12529 T16305 T16304 arg1Of events,CD8-negative
R12530 T16306 T16303 arg3Of ),(
R12531 T16308 T16307 arg2Of gated,were
R12532 T16308 T16310 arg1Of gated,and
R12533 T16310 T16299 arg2Of and,;
R12534 T16310 T16309 arg1Of and,","
R12535 T16312 T16311 arg1Of percentage,the
R12536 T16312 T16313 arg1Of percentage,of
R12537 T16312 T16318 arg1Of percentage,was
R12538 T16312 T16319 arg2Of percentage,determined
R12539 T16317 T16313 arg2Of cells,of
R12540 T16317 T16314 arg1Of cells,Annexin
R12541 T16317 T16315 arg1Of cells,V+
R12542 T16317 T16316 arg1Of cells,target
R12543 T16319 T16310 arg2Of determined,and
R12544 T16319 T16318 arg2Of determined,was

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16130 0-10 JJ denotes FACS-based
T16131 11-23 NN denotes cytotoxicity
T16132 24-29 NN denotes assay
T16133 29-30 . denotes .
T16134 31-33 TO denotes To
T16135 34-41 VB denotes measure
T16136 42-54 NN denotes cytotoxicity
T16137 54-55 , denotes ,
T16138 56-59 CD denotes EL4
T16139 60-67 NN denotes thymoma
T16140 68-74 NN denotes target
T16141 75-80 NNS denotes cells
T16142 81-85 VBD denotes were
T16143 86-92 VBN denotes loaded
T16144 93-97 IN denotes with
T16145 98-99 CD denotes 0
T16146 100-102 CC denotes or
T16147 103-104 CD denotes 1
T16148 105-107 NNP denotes μM
T16149 108-112 NNP denotes Gp33
T16150 113-120 NN denotes peptide
T16151 121-124 IN denotes for
T16152 125-126 CD denotes 2
T16153 127-128 NN denotes h
T16154 129-135 IN denotes before
T16155 136-137 DT denotes a
T16156 138-141 JJ denotes 2-h
T16157 142-154 NN denotes coincubation
T16158 155-159 IN denotes with
T16159 160-163 NNP denotes P14
T16160 164-167 NNP denotes CD8
T16161 167-168 VBD denotes +
T16162 169-170 NNP denotes T
T16163 171-176 NNS denotes cells
T16164 177-179 IN denotes at
T16165 180-183 DT denotes the
T16166 184-202 JJ denotes effector-to-target
T16167 203-209 NNS denotes ratios
T16168 210-219 VBD denotes indicated
T16169 220-222 IN denotes in
T16170 223-226 DT denotes the
T16171 227-234 NNS denotes figures
T16172 235-237 IN denotes in
T16173 238-245 JJ denotes 96-well
T16174 246-258 NN denotes round-bottom
T16175 259-265 NNS denotes plates
T16176 265-266 . denotes .
T16177 267-272 IN denotes After
T16178 273-276 DT denotes the
T16179 277-289 NN denotes coincubation
T16180 290-296 NN denotes period
T16181 296-297 , denotes ,
T16182 298-303 NNS denotes cells
T16183 304-308 VBD denotes were
T16184 309-316 VBN denotes stained
T16185 317-321 IN denotes with
T16186 322-329 NNP denotes Annexin
T16187 330-331 NNP denotes V
T16188 332-336 NNP denotes FITC
T16189 337-340 CC denotes and
T16190 341-349 JJ denotes anti-CD8
T16191 350-365 NN denotes allophycocyanin
T16192 365-366 . denotes .
T16193 367-371 NNP denotes Data
T16194 372-380 NN denotes analysis
T16195 381-384 VBD denotes was
T16196 385-394 VBN denotes performed
T16197 395-399 IN denotes with
T16198 400-406 NNP denotes FlowJo
T16199 407-415 NN denotes software
T16200 416-417 -LRB- denotes (
T16201 417-421 NNP denotes Tree
T16202 422-426 NNP denotes Star
T16203 426-427 , denotes ,
T16204 428-432 NNP denotes Inc.
T16205 432-433 -RRB- denotes )
T16206 433-434 : denotes ;
T16207 435-438 CD denotes EL4
T16208 439-445 NN denotes target
T16209 446-451 NNS denotes cells
T16210 452-453 -LRB- denotes (
T16211 453-465 JJ denotes CD8-negative
T16212 466-472 NNS denotes events
T16213 472-473 -RRB- denotes )
T16214 474-478 VBD denotes were
T16215 479-484 VBN denotes gated
T16216 484-485 , denotes ,
T16217 486-489 CC denotes and
T16218 490-493 DT denotes the
T16219 494-504 NN denotes percentage
T16220 505-507 IN denotes of
T16221 508-515 NNP denotes Annexin
T16222 516-517 NNP denotes V
T16223 517-518 VBD denotes +
T16224 519-525 NN denotes target
T16225 526-531 NNS denotes cells
T16226 532-535 VBD denotes was
T16227 536-546 VBN denotes determined
T16228 546-547 . denotes .
R12352 T16130 T16132 amod FACS-based,assay
R12353 T16131 T16132 compound cytotoxicity,assay
R12354 T16132 T16132 ROOT assay,assay
R12355 T16133 T16132 punct .,assay
R12356 T16134 T16135 aux To,measure
R12357 T16135 T16143 advcl measure,loaded
R12358 T16136 T16135 dobj cytotoxicity,measure
R12359 T16137 T16143 punct ",",loaded
R12360 T16138 T16141 nummod EL4,cells
R12361 T16139 T16141 compound thymoma,cells
R12362 T16140 T16141 compound target,cells
R12363 T16141 T16143 nsubjpass cells,loaded
R12364 T16142 T16143 auxpass were,loaded
R12365 T16143 T16143 ROOT loaded,loaded
R12366 T16144 T16143 prep with,loaded
R12367 T16145 T16144 pobj 0,with
R12368 T16146 T16145 cc or,0
R12369 T16147 T16145 conj 1,0
R12370 T16148 T16150 compound μM,peptide
R12371 T16149 T16150 compound Gp33,peptide
R12372 T16150 T16145 appos peptide,0
R12373 T16151 T16150 prep for,peptide
R12374 T16152 T16153 nummod 2,h
R12375 T16153 T16151 pobj h,for
R12376 T16154 T16143 prep before,loaded
R12377 T16155 T16157 det a,coincubation
R12378 T16156 T16157 amod 2-h,coincubation
R12379 T16157 T16154 pobj coincubation,before
R12380 T16158 T16157 prep with,coincubation
R12381 T16159 T16160 compound P14,CD8
R12382 T16160 T16158 pobj CD8,with
R12383 T16161 T16143 advcl +,loaded
R12384 T16162 T16163 compound T,cells
R12385 T16163 T16161 dobj cells,+
R12386 T16164 T16161 prep at,+
R12387 T16165 T16167 det the,ratios
R12388 T16166 T16167 amod effector-to-target,ratios
R12389 T16167 T16164 pobj ratios,at
R12390 T16168 T16167 acl indicated,ratios
R12391 T16169 T16168 prep in,indicated
R12392 T16170 T16171 det the,figures
R12393 T16171 T16169 pobj figures,in
R12394 T16172 T16171 prep in,figures
R12395 T16173 T16175 amod 96-well,plates
R12396 T16174 T16175 compound round-bottom,plates
R12397 T16175 T16172 pobj plates,in
R12398 T16176 T16143 punct .,loaded
R12399 T16177 T16184 prep After,stained
R12400 T16178 T16180 det the,period
R12401 T16179 T16180 compound coincubation,period
R12402 T16180 T16177 pobj period,After
R12403 T16181 T16184 punct ",",stained
R12404 T16182 T16184 nsubjpass cells,stained
R12405 T16183 T16184 auxpass were,stained
R12406 T16184 T16184 ROOT stained,stained
R12407 T16185 T16184 prep with,stained
R12408 T16186 T16187 compound Annexin,V
R12409 T16187 T16185 pobj V,with
R12410 T16188 T16187 conj FITC,V
R12411 T16189 T16188 cc and,FITC
R12412 T16190 T16188 conj anti-CD8,FITC
R12413 T16191 T16184 npadvmod allophycocyanin,stained
R12414 T16192 T16184 punct .,stained
R12415 T16193 T16194 compound Data,analysis
R12416 T16194 T16196 nsubjpass analysis,performed
R12417 T16195 T16196 auxpass was,performed
R12418 T16196 T16214 ccomp performed,were
R12419 T16197 T16196 prep with,performed
R12420 T16198 T16199 compound FlowJo,software
R12421 T16199 T16197 pobj software,with
R12422 T16200 T16199 punct (,software
R12423 T16201 T16202 compound Tree,Star
R12424 T16202 T16199 appos Star,software
R12425 T16203 T16204 punct ",",Inc.
R12426 T16204 T16199 appos Inc.,software
R12427 T16205 T16196 punct ),performed
R12428 T16206 T16214 punct ;,were
R12429 T16207 T16209 nummod EL4,cells
R12430 T16208 T16209 compound target,cells
R12431 T16209 T16214 nsubj cells,were
R12432 T16210 T16209 punct (,cells
R12433 T16211 T16212 amod CD8-negative,events
R12434 T16212 T16209 appos events,cells
R12435 T16213 T16209 punct ),cells
R12436 T16214 T16214 ROOT were,were
R12437 T16215 T16214 acomp gated,were
R12438 T16216 T16214 punct ",",were
R12439 T16217 T16214 cc and,were
R12440 T16218 T16219 det the,percentage
R12441 T16219 T16227 nsubjpass percentage,determined
R12442 T16220 T16219 prep of,percentage
R12443 T16221 T16222 compound Annexin,V
R12444 T16222 T16220 pobj V,of
R12445 T16223 T16225 amod +,cells
R12446 T16224 T16225 compound target,cells
R12447 T16225 T16219 conj cells,percentage
R12448 T16226 T16227 auxpass was,determined
R12449 T16227 T16214 conj determined,were
R12450 T16228 T16227 punct .,determined

GO-CC

Id Subject Object Predicate Lexical cue
T16332 75-80 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16333 171-176 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16334 298-303 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16335 446-451 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16336 526-531 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T16126 0-30 Sentence denotes FACS-based cytotoxicity assay.
T16127 31-266 Sentence denotes To measure cytotoxicity, EL4 thymoma target cells were loaded with 0 or 1 μM Gp33 peptide for 2 h before a 2-h coincubation with P14 CD8+ T cells at the effector-to-target ratios indicated in the figures in 96-well round-bottom plates.
T16128 267-366 Sentence denotes After the coincubation period, cells were stained with Annexin V–FITC and anti-CD8–allophycocyanin.
T16129 367-547 Sentence denotes Data analysis was performed with FlowJo software (Tree Star, Inc.); EL4 target cells (CD8-negative events) were gated, and the percentage of Annexin V+ target cells was determined.
T175 0-30 Sentence denotes FACS-based cytotoxicity assay.
T176 31-266 Sentence denotes To measure cytotoxicity, EL4 thymoma target cells were loaded with 0 or 1 μM Gp33 peptide for 2 h before a 2-h coincubation with P14 CD8+ T cells at the effector-to-target ratios indicated in the figures in 96-well round-bottom plates.
T177 267-366 Sentence denotes After the coincubation period, cells were stained with Annexin V–FITC and anti-CD8–allophycocyanin.
T178 367-547 Sentence denotes Data analysis was performed with FlowJo software (Tree Star, Inc.); EL4 target cells (CD8-negative events) were gated, and the percentage of Annexin V+ target cells was determined.

events-check-again

Id Subject Object Predicate Lexical cue
T16362 164-167 Protein denotes CD8
T16363 322-331 Protein denotes Annexin V
T16364 346-349 Protein denotes CD8
T16365 453-456 Protein denotes CD8
T16366 508-517 Protein denotes Annexin V

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T16367 56-59 Protein denotes EL4
T16368 105-120 Protein denotes μM Gp33 peptide
T16369 160-163 Protein denotes P14
T16370 346-349 Protein denotes CD8
T16371 350-365 Protein denotes allophycocyanin
T16372 453-456 Protein denotes CD8

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T16121 164-167 Protein denotes CD8
T16122 322-331 Protein denotes Annexin V
T16123 346-349 Protein denotes CD8
T16124 453-456 Protein denotes CD8
T16125 508-517 Protein denotes Annexin V

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16320 164-167 P10966 denotes CD8
T16321 164-167 P01732 denotes CD8
T16322 322-331 P08758 denotes Annexin V
T16323 346-349 P10966 denotes CD8
T16324 346-349 P01732 denotes CD8
T16325 453-456 P01732 denotes CD8
T16326 453-456 P10966 denotes CD8
T16327 508-517 P08758 denotes Annexin V

test2

Id Subject Object Predicate Lexical cue
T16116 164-167 Protein denotes CD8
T16117 322-331 Protein denotes Annexin V
T16118 346-349 Protein denotes CD8
T16119 453-456 Protein denotes CD8
T16120 508-517 Protein denotes Annexin V