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PMC:2626671 / 26310-27413 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14607 0-9 NN denotes Isolation
T14608 10-13 CC denotes and
T14609 14-21 NN denotes culture
T14610 22-24 IN denotes of
T14611 25-32 JJ denotes primary
T14612 33-37 JJ denotes CD8+
T14613 38-39 NN denotes T
T14614 40-45 NN denotes cells
T14615 47-51 JJ denotes CD8+
T14616 52-53 NN denotes T
T14617 54-59 NN denotes cells
T14618 60-64 IN denotes from
T14619 65-75 JJ denotes 4–8-wk-old
T14620 76-83 NN denotes Tcra−/−
T14621 84-85 NN denotes ×
T14622 86-89 NN denotes P14
T14623 90-93 NN denotes TCR
T14624 94-104 JJ denotes transgenic
T14625 105-106 -LRB- denotes (
T14626 106-113 JJ denotes Taconic
T14627 113-114 -RRB- denotes )
T14628 114-115 -COMMA- denotes ,
T14629 116-124 NN denotes C57BL/6J
T14630 125-127 NNP denotes WT
T14631 127-128 -COMMA- denotes ,
T14632 129-131 CC denotes or
T14633 132-140 NN denotes Tbx21−/−
T14634 141-142 -LRB- denotes (
T14635 142-145 DT denotes The
T14636 146-153 NNP denotes Jackson
T14637 154-164 NNP denotes Laboratory
T14638 164-165 -RRB- denotes )
T14639 166-170 NN denotes mice
T14640 171-175 VB denotes were
T14641 176-184 VB denotes purified
T14642 185-186 -LRB- denotes (
T14643 186-187 SYM denotes >
T14644 187-189 CD denotes 95
T14645 189-190 NN denotes %
T14646 191-197 NN denotes purity
T14647 197-198 -RRB- denotes )
T14648 199-201 IN denotes by
T14649 202-210 JJ denotes negative
T14650 211-220 NN denotes selection
T14651 221-222 -LRB- denotes (
T14652 222-232 NN denotes Invitrogen
T14653 232-233 -RRB- denotes )
T14654 234-238 IN denotes from
T14655 239-245 VB denotes pooled
T14656 246-252 NN denotes spleen
T14657 253-256 CC denotes and
T14658 257-262 NN denotes lymph
T14659 263-267 NN denotes node
T14660 268-273 NN denotes cells
T14661 275-279 JJ denotes CD8+
T14662 280-281 NN denotes T
T14663 282-287 NN denotes cells
T14664 288-292 IN denotes from
T14665 293-301 NN denotes Runx3−/−
T14666 302-306 NN denotes mice
T14667 307-309 IN denotes on
T14668 310-313 DT denotes the
T14669 314-317 NN denotes ICR
T14670 318-328 NN denotes background
T14671 329-333 VB denotes were
T14672 334-342 VB denotes purified
T14673 343-345 IN denotes by
T14674 346-354 JJ denotes positive
T14675 355-364 NN denotes selection
T14676 365-366 -LRB- denotes (
T14677 366-374 NNP denotes Miltenyi
T14678 375-381 NNP denotes Biotec
T14679 381-382 -RRB- denotes )
T14680 384-387 DT denotes All
T14681 388-392 NN denotes mice
T14682 393-397 VB denotes were
T14683 398-408 VB denotes maintained
T14684 409-411 IN denotes in
T14685 412-420 JJ denotes specific
T14686 421-434 JJ denotes pathogen-free
T14687 435-442 NN denotes barrier
T14688 443-453 NN denotes facilities
T14689 454-457 CC denotes and
T14690 458-462 VB denotes used
T14691 463-472 VB denotes according
T14692 473-475 TO denotes to
T14693 476-485 NN denotes protocols
T14694 486-494 VB denotes approved
T14695 495-497 IN denotes by
T14696 498-501 DT denotes the
T14697 502-508 NNP denotes Immune
T14698 509-516 NNP denotes Disease
T14699 517-526 NNP denotes Institute
T14700 527-530 CC denotes and
T14701 531-534 DT denotes the
T14702 535-542 NNP denotes Harvard
T14703 543-550 NNP denotes Medical
T14704 551-557 NNP denotes School
T14705 558-564 NNP denotes Animal
T14706 565-569 NNP denotes Care
T14707 570-573 CC denotes and
T14708 574-577 NNP denotes Use
T14709 578-589 NNP denotes Committees.
T14710 590-593 IN denotes For
T14711 594-605 NN denotes stimulation
T14712 605-606 -COMMA- denotes ,
T14713 607-615 VB denotes purified
T14714 616-620 JJ denotes CD8+
T14715 621-622 NN denotes T
T14716 623-628 NN denotes cells
T14717 629-633 VB denotes were
T14718 634-642 VB denotes cultured
T14719 643-645 IN denotes at
T14720 646-649 CD denotes 106
T14721 650-658 NN denotes cells/ml
T14722 659-660 -LRB- denotes (
T14723 660-662 CD denotes 10
T14724 663-665 NN denotes ml
T14725 665-666 -RRB- denotes )
T14726 667-669 IN denotes in
T14727 670-673 NN denotes T25
T14728 674-680 NN denotes flasks
T14729 681-687 VB denotes coated
T14730 688-692 IN denotes with
T14731 693-694 CD denotes 1
T14732 695-700 NN denotes μg/ml
T14733 701-705 DT denotes each
T14734 706-708 IN denotes of
T14735 709-717 NN denotes anti-CD3
T14736 718-719 -LRB- denotes (
T14737 719-724 NN denotes clone
T14738 725-729 NN denotes 2C11
T14739 729-730 -RRB- denotes )
T14740 731-734 CC denotes and
T14741 735-744 JJ denotes anti-CD28
T14742 745-746 -LRB- denotes (
T14743 746-751 NN denotes clone
T14744 752-757 CD denotes 37.51
T14745 757-758 -RRB- denotes )
T14746 759-761 IN denotes by
T14747 762-774 NN denotes pretreatment
T14748 775-779 IN denotes with
T14749 780-783 CD denotes 300
T14750 784-789 NN denotes μg/ml
T14751 790-794 NN denotes goat
T14752 795-807 NN denotes anti–hamster
T14753 808-811 NN denotes IgG
T14754 813-818 IN denotes After
T14755 819-821 CD denotes 48
T14756 822-823 NN denotes h
T14757 823-824 -COMMA- denotes ,
T14758 825-830 NN denotes cells
T14759 831-835 VB denotes were
T14760 836-843 VB denotes removed
T14761 844-848 IN denotes from
T14762 849-852 DT denotes the
T14763 853-856 NN denotes TCR
T14764 857-868 NN denotes stimulation
T14765 869-872 CC denotes and
T14766 873-883 VB denotes recultured
T14767 884-886 IN denotes at
T14768 887-888 DT denotes a
T14769 889-902 NN denotes concentration
T14770 903-905 IN denotes of
T14771 906-907 CD denotes 5
T14772 908-909 IN denotes ×
T14773 910-913 CD denotes 105
T14774 914-922 NN denotes cells/ml
T14775 923-925 IN denotes in
T14776 926-931 NN denotes media
T14777 932-944 VB denotes supplemented
T14778 945-949 IN denotes with
T14779 950-953 CD denotes 100
T14780 954-958 NN denotes U/ml
T14781 959-965 NN denotes rhIL-2
T14782 967-972 DT denotes Every
T14783 973-975 CD denotes 24
T14784 976-977 NN denotes h
T14785 977-978 -COMMA- denotes ,
T14786 979-985 JJ denotes viable
T14787 986-991 NN denotes cells
T14788 992-996 VB denotes were
T14789 997-1004 VB denotes counted
T14790 1005-1008 CC denotes and
T14791 1009-1019 VB denotes readjusted
T14792 1020-1022 TO denotes to
T14793 1023-1024 CD denotes 5
T14794 1025-1026 IN denotes ×
T14795 1027-1030 CD denotes 105
T14796 1031-1039 NN denotes cells/ml
T14797 1040-1044 IN denotes with
T14798 1045-1050 JJ denotes fresh
T14799 1051-1056 NN denotes media
T14800 1057-1067 VB denotes containing
T14801 1068-1071 DT denotes the
T14802 1072-1085 VB denotes corresponding
T14803 1086-1092 NN denotes amount
T14804 1093-1095 IN denotes of
T14805 1096-1102 NN denotes rhIL-2
R11380 T14607 T14608 arg1Of Isolation,and
R11381 T14608 T14610 arg1Of and,of
R11382 T14609 T14608 arg2Of culture,and
R11383 T14614 T14610 arg2Of cells,of
R11384 T14614 T14611 arg1Of cells,primary
R11385 T14614 T14612 arg1Of cells,CD8+
R11386 T14614 T14613 arg1Of cells,T
R11387 T14617 T14615 arg1Of cells,CD8+
R11388 T14617 T14616 arg1Of cells,T
R11389 T14617 T14618 arg1Of cells,from
R11390 T14617 T14624 arg1Of cells,transgenic
R11391 T14617 T14628 arg1Of cells,","
R11392 T14623 T14618 arg2Of TCR,from
R11393 T14623 T14619 arg1Of TCR,4–8-wk-old
R11394 T14623 T14620 arg1Of TCR,Tcra−/−
R11395 T14623 T14621 arg1Of TCR,×
R11396 T14623 T14622 arg1Of TCR,P14
R11397 T14624 T14625 arg1Of transgenic,(
R11398 T14626 T14625 arg2Of Taconic,(
R11399 T14627 T14625 arg3Of ),(
R11400 T14628 T14632 arg1Of ",",or
R11401 T14630 T14628 arg2Of WT,","
R11402 T14630 T14629 arg1Of WT,C57BL/6J
R11403 T14632 T14631 arg1Of or,","
R11404 T14632 T14640 arg1Of or,were
R11405 T14632 T14641 arg2Of or,purified
R11406 T14633 T14634 arg1Of Tbx21−/−,(
R11407 T14637 T14634 arg2Of Laboratory,(
R11408 T14637 T14635 arg1Of Laboratory,The
R11409 T14637 T14636 arg1Of Laboratory,Jackson
R11410 T14638 T14634 arg3Of ),(
R11411 T14639 T14632 arg2Of mice,or
R11412 T14639 T14633 arg1Of mice,Tbx21−/−
R11413 T14641 T14640 arg2Of purified,were
R11414 T14641 T14642 arg1Of purified,(
R11415 T14641 T14648 arg1Of purified,by
R11416 T14641 T14654 arg1Of purified,from
R11417 T14644 T14643 arg1Of 95,>
R11418 T14644 T14645 arg1Of 95,%
R11419 T14646 T14642 arg2Of purity,(
R11420 T14646 T14644 arg1Of purity,95
R11421 T14647 T14642 arg3Of ),(
R11422 T14650 T14648 arg2Of selection,by
R11423 T14650 T14649 arg1Of selection,negative
R11424 T14650 T14651 arg1Of selection,(
R11425 T14652 T14651 arg2Of Invitrogen,(
R11426 T14653 T14651 arg3Of ),(
R11427 T14656 T14657 arg1Of spleen,and
R11428 T14658 T14657 arg2Of lymph,and
R11429 T14660 T14654 arg2Of cells,from
R11430 T14660 T14655 arg2Of cells,pooled
R11431 T14660 T14656 arg1Of cells,spleen
R11432 T14660 T14658 arg1Of cells,lymph
R11433 T14660 T14659 arg1Of cells,node
R11434 T14663 T14661 arg1Of cells,CD8+
R11435 T14663 T14662 arg1Of cells,T
R11436 T14663 T14664 arg1Of cells,from
R11437 T14663 T14671 arg1Of cells,were
R11438 T14663 T14672 arg2Of cells,purified
R11439 T14666 T14664 arg2Of mice,from
R11440 T14666 T14665 arg1Of mice,Runx3−/−
R11441 T14666 T14667 arg1Of mice,on
R11442 T14670 T14667 arg2Of background,on
R11443 T14670 T14668 arg1Of background,the
R11444 T14670 T14669 arg1Of background,ICR
R11445 T14672 T14671 arg2Of purified,were
R11446 T14675 T14672 arg1Of selection,purified
R11447 T14675 T14673 arg2Of selection,by
R11448 T14675 T14674 arg1Of selection,positive
R11449 T14675 T14676 arg1Of selection,(
R11450 T14678 T14676 arg2Of Biotec,(
R11451 T14678 T14677 arg1Of Biotec,Miltenyi
R11452 T14679 T14676 arg3Of ),(
R11453 T14681 T14680 arg1Of mice,All
R11454 T14681 T14682 arg1Of mice,were
R11455 T14681 T14683 arg2Of mice,maintained
R11456 T14681 T14690 arg2Of mice,used
R11457 T14683 T14684 arg1Of maintained,in
R11458 T14683 T14689 arg1Of maintained,and
R11459 T14688 T14684 arg2Of facilities,in
R11460 T14688 T14685 arg1Of facilities,specific
R11461 T14688 T14686 arg1Of facilities,pathogen-free
R11462 T14688 T14687 arg1Of facilities,barrier
R11463 T14689 T14682 arg2Of and,were
R11464 T14689 T14712 arg1Of and,","
R11465 T14690 T14689 arg2Of used,and
R11466 T14690 T14691 arg1Of used,according
R11467 T14690 T14710 arg1Of used,For
R11468 T14692 T14691 arg2Of to,according
R11469 T14693 T14694 arg2Of protocols,approved
R11470 T14693 T14700 arg1Of protocols,and
R11471 T14699 T14694 arg1Of Institute,approved
R11472 T14699 T14695 arg2Of Institute,by
R11473 T14699 T14696 arg1Of Institute,the
R11474 T14699 T14697 arg1Of Institute,Immune
R11475 T14699 T14698 arg1Of Institute,Disease
R11476 T14700 T14692 arg2Of and,to
R11477 T14706 T14702 arg1Of Care,Harvard
R11478 T14706 T14703 arg1Of Care,Medical
R11479 T14706 T14704 arg1Of Care,School
R11480 T14706 T14705 arg1Of Care,Animal
R11481 T14706 T14707 arg1Of Care,and
R11482 T14708 T14707 arg2Of Use,and
R11483 T14709 T14700 arg2Of Committees.,and
R11484 T14709 T14701 arg1Of Committees.,the
R11485 T14709 T14706 arg1Of Committees.,Care
R11486 T14709 T14708 arg1Of Committees.,Use
R11487 T14711 T14710 arg2Of stimulation,For
R11488 T14716 T14713 arg2Of cells,purified
R11489 T14716 T14714 arg1Of cells,CD8+
R11490 T14716 T14715 arg1Of cells,T
R11491 T14716 T14717 arg1Of cells,were
R11492 T14716 T14718 arg2Of cells,cultured
R11493 T14718 T14712 arg2Of cultured,","
R11494 T14718 T14717 arg2Of cultured,were
R11495 T14718 T14719 arg1Of cultured,at
R11496 T14721 T14719 arg2Of cells/ml,at
R11497 T14721 T14720 arg1Of cells/ml,106
R11498 T14721 T14722 arg1Of cells/ml,(
R11499 T14721 T14726 arg1Of cells/ml,in
R11500 T14724 T14722 arg2Of ml,(
R11501 T14724 T14723 arg1Of ml,10
R11502 T14725 T14722 arg3Of ),(
R11503 T14728 T14726 arg2Of flasks,in
R11504 T14728 T14727 arg1Of flasks,T25
R11505 T14728 T14729 arg2Of flasks,coated
R11506 T14729 T14730 arg1Of coated,with
R11507 T14732 T14730 arg2Of μg/ml,with
R11508 T14732 T14731 arg1Of μg/ml,1
R11509 T14732 T14733 arg1Of μg/ml,each
R11510 T14732 T14734 arg1Of μg/ml,of
R11511 T14735 T14736 arg1Of anti-CD3,(
R11512 T14735 T14740 arg1Of anti-CD3,and
R11513 T14738 T14736 arg2Of 2C11,(
R11514 T14738 T14737 arg1Of 2C11,clone
R11515 T14739 T14736 arg3Of ),(
R11516 T14740 T14734 arg2Of and,of
R11517 T14740 T14746 arg1Of and,by
R11518 T14743 T14740 arg2Of clone,and
R11519 T14743 T14741 arg1Of clone,anti-CD28
R11520 T14743 T14742 arg2Of clone,(
R11521 T14743 T14744 arg1Of clone,37.51
R11522 T14745 T14742 arg3Of ),(
R11523 T14747 T14746 arg2Of pretreatment,by
R11524 T14747 T14748 arg1Of pretreatment,with
R11525 T14753 T14748 arg2Of IgG,with
R11526 T14753 T14749 arg1Of IgG,300
R11527 T14753 T14750 arg1Of IgG,μg/ml
R11528 T14753 T14751 arg1Of IgG,goat
R11529 T14753 T14752 arg1Of IgG,anti–hamster
R11530 T14756 T14754 arg2Of h,After
R11531 T14756 T14755 arg1Of h,48
R11532 T14758 T14759 arg1Of cells,were
R11533 T14758 T14760 arg2Of cells,removed
R11534 T14758 T14766 arg2Of cells,recultured
R11535 T14760 T14761 arg1Of removed,from
R11536 T14760 T14765 arg1Of removed,and
R11537 T14764 T14761 arg2Of stimulation,from
R11538 T14764 T14762 arg1Of stimulation,the
R11539 T14764 T14763 arg1Of stimulation,TCR
R11540 T14765 T14754 arg1Of and,After
R11541 T14765 T14757 arg1Of and,","
R11542 T14765 T14759 arg2Of and,were
R11543 T14766 T14765 arg2Of recultured,and
R11544 T14766 T14767 arg1Of recultured,at
R11545 T14769 T14767 arg2Of concentration,at
R11546 T14769 T14768 arg1Of concentration,a
R11547 T14769 T14770 arg1Of concentration,of
R11548 T14769 T14775 arg1Of concentration,in
R11549 T14773 T14772 arg1Of 105,×
R11550 T14774 T14770 arg2Of cells/ml,of
R11551 T14774 T14771 arg1Of cells/ml,5
R11552 T14774 T14773 arg1Of cells/ml,105
R11553 T14776 T14775 arg2Of media,in
R11554 T14776 T14777 arg2Of media,supplemented
R11555 T14777 T14778 arg1Of supplemented,with
R11556 T14781 T14778 arg2Of rhIL-2,with
R11557 T14781 T14779 arg1Of rhIL-2,100
R11558 T14781 T14780 arg1Of rhIL-2,U/ml
R11559 T14784 T14782 arg1Of h,Every
R11560 T14784 T14783 arg1Of h,24
R11561 T14787 T14786 arg1Of cells,viable
R11562 T14787 T14788 arg1Of cells,were
R11563 T14787 T14789 arg2Of cells,counted
R11564 T14787 T14791 arg2Of cells,readjusted
R11565 T14789 T14790 arg1Of counted,and
R11566 T14790 T14784 arg1Of and,h
R11567 T14790 T14785 arg1Of and,","
R11568 T14790 T14788 arg2Of and,were
R11569 T14791 T14790 arg2Of readjusted,and
R11570 T14791 T14792 arg1Of readjusted,to
R11571 T14795 T14794 arg1Of 105,×
R11572 T14796 T14792 arg2Of cells/ml,to
R11573 T14796 T14793 arg1Of cells/ml,5
R11574 T14796 T14795 arg1Of cells/ml,105
R11575 T14796 T14797 arg1Of cells/ml,with
R11576 T14799 T14797 arg2Of media,with
R11577 T14799 T14798 arg1Of media,fresh
R11578 T14799 T14800 arg1Of media,containing
R11579 T14803 T14800 arg2Of amount,containing
R11580 T14803 T14801 arg1Of amount,the
R11581 T14803 T14802 arg1Of amount,corresponding
R11582 T14803 T14804 arg1Of amount,of
R11583 T14805 T14804 arg2Of rhIL-2,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14382 0-9 NN denotes Isolation
T14383 10-13 CC denotes and
T14384 14-21 NN denotes culture
T14385 22-24 IN denotes of
T14386 25-32 JJ denotes primary
T14387 33-36 NNP denotes CD8
T14388 36-37 CD denotes +
T14389 38-39 NNP denotes T
T14390 40-45 NNS denotes cells
T14391 45-46 . denotes .
T14392 47-50 CD denotes CD8
T14393 50-51 CD denotes +
T14394 52-53 NNP denotes T
T14395 54-59 NNS denotes cells
T14396 60-64 IN denotes from
T14397 65-66 CD denotes 4
T14398 67-75 JJ denotes 8-wk-old
T14399 76-80 NNP denotes Tcra
T14400 80-81 FW denotes −
T14401 81-82 FW denotes /
T14402 82-83 FW denotes −
T14403 84-85 FW denotes ×
T14404 86-89 FW denotes P14
T14405 90-93 FW denotes TCR
T14406 94-104 FW denotes transgenic
T14407 105-106 -LRB- denotes (
T14408 106-113 NNP denotes Taconic
T14409 113-114 -RRB- denotes )
T14410 114-115 , denotes ,
T14411 116-124 NNP denotes C57BL/6J
T14412 125-127 NNP denotes WT
T14413 127-128 , denotes ,
T14414 129-131 CC denotes or
T14415 132-137 CD denotes Tbx21
T14416 137-138 CD denotes −
T14417 138-139 NN denotes /
T14418 139-140 NN denotes −
T14419 141-142 -LRB- denotes (
T14420 142-145 DT denotes The
T14421 146-153 NNP denotes Jackson
T14422 154-164 NNP denotes Laboratory
T14423 164-165 -RRB- denotes )
T14424 166-170 NNS denotes mice
T14425 171-175 VBD denotes were
T14426 176-184 VBN denotes purified
T14427 185-186 -LRB- denotes (
T14428 186-187 FW denotes >
T14429 187-189 CD denotes 95
T14430 189-190 NN denotes %
T14431 191-197 NN denotes purity
T14432 197-198 -RRB- denotes )
T14433 199-201 IN denotes by
T14434 202-210 JJ denotes negative
T14435 211-220 NN denotes selection
T14436 221-222 -LRB- denotes (
T14437 222-232 NNP denotes Invitrogen
T14438 232-233 -RRB- denotes )
T14439 234-238 IN denotes from
T14440 239-245 VBN denotes pooled
T14441 246-252 NN denotes spleen
T14442 253-256 CC denotes and
T14443 257-262 NN denotes lymph
T14444 263-267 NN denotes node
T14445 268-273 NNS denotes cells
T14446 273-274 . denotes .
T14447 275-278 CD denotes CD8
T14448 278-279 CD denotes +
T14449 280-281 NNP denotes T
T14450 282-287 NNS denotes cells
T14451 288-292 IN denotes from
T14452 293-298 JJ denotes Runx3
T14453 298-299 NN denotes −
T14454 299-300 NN denotes /
T14455 300-301 NN denotes −
T14456 302-306 NNS denotes mice
T14457 307-309 IN denotes on
T14458 310-313 DT denotes the
T14459 314-317 NNP denotes ICR
T14460 318-328 NN denotes background
T14461 329-333 VBD denotes were
T14462 334-342 VBN denotes purified
T14463 343-345 IN denotes by
T14464 346-354 JJ denotes positive
T14465 355-364 NN denotes selection
T14466 365-366 -LRB- denotes (
T14467 366-374 NNP denotes Miltenyi
T14468 375-381 NNP denotes Biotec
T14469 381-382 -RRB- denotes )
T14470 382-383 . denotes .
T14471 384-387 DT denotes All
T14472 388-392 NNS denotes mice
T14473 393-397 VBD denotes were
T14474 398-408 VBN denotes maintained
T14475 409-411 IN denotes in
T14476 412-420 JJ denotes specific
T14477 421-434 JJ denotes pathogen-free
T14478 435-442 NN denotes barrier
T14479 443-453 NNS denotes facilities
T14480 454-457 CC denotes and
T14481 458-462 VBN denotes used
T14482 463-472 VBG denotes according
T14483 473-475 TO denotes to
T14484 476-485 NNS denotes protocols
T14485 486-494 VBN denotes approved
T14486 495-497 IN denotes by
T14487 498-501 DT denotes the
T14488 502-508 NNP denotes Immune
T14489 509-516 NNP denotes Disease
T14490 517-526 NNP denotes Institute
T14491 527-530 CC denotes and
T14492 531-534 DT denotes the
T14493 535-542 NNP denotes Harvard
T14494 543-550 NNP denotes Medical
T14495 551-557 NNP denotes School
T14496 558-564 NNP denotes Animal
T14497 565-569 NNP denotes Care
T14498 570-573 CC denotes and
T14499 574-577 NNP denotes Use
T14500 578-588 NNS denotes Committees
T14501 588-589 . denotes .
T14502 590-593 IN denotes For
T14503 594-605 NN denotes stimulation
T14504 605-606 , denotes ,
T14505 607-615 VBN denotes purified
T14506 616-619 NNP denotes CD8
T14507 619-620 CD denotes +
T14508 621-622 NNP denotes T
T14509 623-628 NNS denotes cells
T14510 629-633 VBD denotes were
T14511 634-642 VBN denotes cultured
T14512 643-645 IN denotes at
T14513 646-649 CD denotes 106
T14514 650-658 NN denotes cells/ml
T14515 659-660 -LRB- denotes (
T14516 660-662 CD denotes 10
T14517 663-665 NN denotes ml
T14518 665-666 -RRB- denotes )
T14519 667-669 IN denotes in
T14520 670-673 CD denotes T25
T14521 674-680 NNS denotes flasks
T14522 681-687 VBN denotes coated
T14523 688-692 IN denotes with
T14524 693-694 CD denotes 1
T14525 695-697 NN denotes μg
T14526 697-698 NN denotes /
T14527 698-700 NN denotes ml
T14528 701-705 DT denotes each
T14529 706-708 IN denotes of
T14530 709-717 JJ denotes anti-CD3
T14531 718-719 -LRB- denotes (
T14532 719-724 JJ denotes clone
T14533 725-729 NNP denotes 2C11
T14534 729-730 -RRB- denotes )
T14535 731-734 CC denotes and
T14536 735-744 JJ denotes anti-CD28
T14537 745-746 -LRB- denotes (
T14538 746-751 JJ denotes clone
T14539 752-757 CD denotes 37.51
T14540 757-758 -RRB- denotes )
T14541 759-761 IN denotes by
T14542 762-774 NN denotes pretreatment
T14543 775-779 IN denotes with
T14544 780-783 CD denotes 300
T14545 784-786 NN denotes μg
T14546 786-787 NN denotes /
T14547 787-789 NN denotes ml
T14548 790-794 NN denotes goat
T14549 795-799 NNS denotes anti
T14550 800-807 NN denotes hamster
T14551 808-811 NNP denotes IgG
T14552 811-812 . denotes .
T14553 813-818 IN denotes After
T14554 819-821 CD denotes 48
T14555 822-823 NN denotes h
T14556 823-824 , denotes ,
T14557 825-830 NNS denotes cells
T14558 831-835 VBD denotes were
T14559 836-843 VBN denotes removed
T14560 844-848 IN denotes from
T14561 849-852 DT denotes the
T14562 853-856 NNP denotes TCR
T14563 857-868 NN denotes stimulation
T14564 869-872 CC denotes and
T14565 873-883 VBD denotes recultured
T14566 884-886 IN denotes at
T14567 887-888 DT denotes a
T14568 889-902 NN denotes concentration
T14569 903-905 IN denotes of
T14570 906-907 CD denotes 5
T14571 908-909 CD denotes ×
T14572 910-913 CD denotes 105
T14573 914-922 NN denotes cells/ml
T14574 923-925 IN denotes in
T14575 926-931 NNS denotes media
T14576 932-944 VBN denotes supplemented
T14577 945-949 IN denotes with
T14578 950-953 CD denotes 100
T14579 954-958 NNP denotes U/ml
T14580 959-965 NNP denotes rhIL-2
T14581 965-966 . denotes .
T14582 967-972 DT denotes Every
T14583 973-975 CD denotes 24
T14584 976-977 NN denotes h
T14585 977-978 , denotes ,
T14586 979-985 JJ denotes viable
T14587 986-991 NNS denotes cells
T14588 992-996 VBD denotes were
T14589 997-1004 VBN denotes counted
T14590 1005-1008 CC denotes and
T14591 1009-1019 VBN denotes readjusted
T14592 1020-1022 TO denotes to
T14593 1023-1024 CD denotes 5
T14594 1025-1026 CD denotes ×
T14595 1027-1030 CD denotes 105
T14596 1031-1039 NN denotes cells/ml
T14597 1040-1044 IN denotes with
T14598 1045-1050 JJ denotes fresh
T14599 1051-1056 NNS denotes media
T14600 1057-1067 VBG denotes containing
T14601 1068-1071 DT denotes the
T14602 1072-1085 JJ denotes corresponding
T14603 1086-1092 NN denotes amount
T14604 1093-1095 IN denotes of
T14605 1096-1102 NN denotes rhIL-2
T14606 1102-1103 . denotes .
R11155 T14382 T14382 ROOT Isolation,Isolation
R11156 T14383 T14382 cc and,Isolation
R11157 T14384 T14382 conj culture,Isolation
R11158 T14385 T14382 prep of,Isolation
R11159 T14386 T14390 amod primary,cells
R11160 T14387 T14390 nmod CD8,cells
R11161 T14388 T14390 nummod +,cells
R11162 T14389 T14390 compound T,cells
R11163 T14390 T14385 pobj cells,of
R11164 T14391 T14382 punct .,Isolation
R11165 T14392 T14395 nummod CD8,cells
R11166 T14393 T14395 nummod +,cells
R11167 T14394 T14395 compound T,cells
R11168 T14395 T14426 nsubjpass cells,purified
R11169 T14396 T14395 prep from,cells
R11170 T14397 T14396 pobj 4,from
R11171 T14398 T14399 compound 8-wk-old,Tcra
R11172 T14399 T14426 nsubjpass Tcra,purified
R11173 T14400 T14406 nmod −,transgenic
R11174 T14401 T14406 nmod /,transgenic
R11175 T14402 T14406 nmod −,transgenic
R11176 T14403 T14406 nmod ×,transgenic
R11177 T14404 T14406 nmod P14,transgenic
R11178 T14405 T14406 nmod TCR,transgenic
R11179 T14406 T14412 nmod transgenic,WT
R11180 T14407 T14408 punct (,Taconic
R11181 T14408 T14406 appos Taconic,transgenic
R11182 T14409 T14408 punct ),Taconic
R11183 T14410 T14412 punct ",",WT
R11184 T14411 T14412 compound C57BL/6J,WT
R11185 T14412 T14399 conj WT,Tcra
R11186 T14413 T14412 punct ",",WT
R11187 T14414 T14412 cc or,WT
R11188 T14415 T14418 nummod Tbx21,−
R11189 T14416 T14418 nummod −,−
R11190 T14417 T14418 compound /,−
R11191 T14418 T14412 conj −,WT
R11192 T14419 T14422 punct (,Laboratory
R11193 T14420 T14422 det The,Laboratory
R11194 T14421 T14422 compound Jackson,Laboratory
R11195 T14422 T14418 appos Laboratory,−
R11196 T14423 T14422 punct ),Laboratory
R11197 T14424 T14418 conj mice,−
R11198 T14425 T14426 auxpass were,purified
R11199 T14426 T14426 ROOT purified,purified
R11200 T14427 T14426 punct (,purified
R11201 T14428 T14431 compound >,purity
R11202 T14429 T14430 nummod 95,%
R11203 T14430 T14431 compound %,purity
R11204 T14431 T14426 appos purity,purified
R11205 T14432 T14426 punct ),purified
R11206 T14433 T14426 agent by,purified
R11207 T14434 T14435 amod negative,selection
R11208 T14435 T14433 pobj selection,by
R11209 T14436 T14437 punct (,Invitrogen
R11210 T14437 T14435 appos Invitrogen,selection
R11211 T14438 T14437 punct ),Invitrogen
R11212 T14439 T14435 prep from,selection
R11213 T14440 T14441 amod pooled,spleen
R11214 T14441 T14439 pobj spleen,from
R11215 T14442 T14441 cc and,spleen
R11216 T14443 T14445 amod lymph,cells
R11217 T14444 T14445 compound node,cells
R11218 T14445 T14441 conj cells,spleen
R11219 T14446 T14426 punct .,purified
R11220 T14447 T14450 nummod CD8,cells
R11221 T14448 T14450 nummod +,cells
R11222 T14449 T14450 compound T,cells
R11223 T14450 T14462 nsubjpass cells,purified
R11224 T14451 T14450 prep from,cells
R11225 T14452 T14456 amod Runx3,mice
R11226 T14453 T14456 nmod −,mice
R11227 T14454 T14456 nmod /,mice
R11228 T14455 T14456 compound −,mice
R11229 T14456 T14451 pobj mice,from
R11230 T14457 T14450 prep on,cells
R11231 T14458 T14460 det the,background
R11232 T14459 T14460 compound ICR,background
R11233 T14460 T14457 pobj background,on
R11234 T14461 T14462 auxpass were,purified
R11235 T14462 T14462 ROOT purified,purified
R11236 T14463 T14462 agent by,purified
R11237 T14464 T14465 amod positive,selection
R11238 T14465 T14463 pobj selection,by
R11239 T14466 T14468 punct (,Biotec
R11240 T14467 T14468 compound Miltenyi,Biotec
R11241 T14468 T14465 appos Biotec,selection
R11242 T14469 T14468 punct ),Biotec
R11243 T14470 T14462 punct .,purified
R11244 T14471 T14472 det All,mice
R11245 T14472 T14474 nsubjpass mice,maintained
R11246 T14473 T14474 auxpass were,maintained
R11247 T14474 T14474 ROOT maintained,maintained
R11248 T14475 T14474 prep in,maintained
R11249 T14476 T14479 amod specific,facilities
R11250 T14477 T14479 amod pathogen-free,facilities
R11251 T14478 T14479 compound barrier,facilities
R11252 T14479 T14475 pobj facilities,in
R11253 T14480 T14474 cc and,maintained
R11254 T14481 T14474 conj used,maintained
R11255 T14482 T14481 prep according,used
R11256 T14483 T14482 prep to,according
R11257 T14484 T14483 pobj protocols,to
R11258 T14485 T14484 acl approved,protocols
R11259 T14486 T14485 agent by,approved
R11260 T14487 T14490 det the,Institute
R11261 T14488 T14490 compound Immune,Institute
R11262 T14489 T14490 compound Disease,Institute
R11263 T14490 T14486 pobj Institute,by
R11264 T14491 T14490 cc and,Institute
R11265 T14492 T14497 det the,Care
R11266 T14493 T14495 compound Harvard,School
R11267 T14494 T14495 compound Medical,School
R11268 T14495 T14497 compound School,Care
R11269 T14496 T14497 compound Animal,Care
R11270 T14497 T14490 conj Care,Institute
R11271 T14498 T14497 cc and,Care
R11272 T14499 T14497 conj Use,Care
R11273 T14500 T14497 conj Committees,Care
R11274 T14501 T14474 punct .,maintained
R11275 T14502 T14511 prep For,cultured
R11276 T14503 T14502 pobj stimulation,For
R11277 T14504 T14511 punct ",",cultured
R11278 T14505 T14509 amod purified,cells
R11279 T14506 T14509 nmod CD8,cells
R11280 T14507 T14509 nummod +,cells
R11281 T14508 T14509 compound T,cells
R11282 T14509 T14511 nsubjpass cells,cultured
R11283 T14510 T14511 auxpass were,cultured
R11284 T14511 T14511 ROOT cultured,cultured
R11285 T14512 T14511 prep at,cultured
R11286 T14513 T14514 nummod 106,cells/ml
R11287 T14514 T14512 pobj cells/ml,at
R11288 T14515 T14517 punct (,ml
R11289 T14516 T14517 nummod 10,ml
R11290 T14517 T14514 appos ml,cells/ml
R11291 T14518 T14517 punct ),ml
R11292 T14519 T14511 prep in,cultured
R11293 T14520 T14521 nummod T25,flasks
R11294 T14521 T14519 pobj flasks,in
R11295 T14522 T14511 conj coated,cultured
R11296 T14523 T14522 prep with,coated
R11297 T14524 T14525 nummod 1,μg
R11298 T14525 T14527 compound μg,ml
R11299 T14526 T14527 compound /,ml
R11300 T14527 T14523 pobj ml,with
R11301 T14528 T14527 appos each,ml
R11302 T14529 T14528 prep of,each
R11303 T14530 T14529 pobj anti-CD3,of
R11304 T14531 T14533 punct (,2C11
R11305 T14532 T14533 compound clone,2C11
R11306 T14533 T14530 appos 2C11,anti-CD3
R11307 T14534 T14533 punct ),2C11
R11308 T14535 T14530 cc and,anti-CD3
R11309 T14536 T14530 conj anti-CD28,anti-CD3
R11310 T14537 T14538 punct (,clone
R11311 T14538 T14536 appos clone,anti-CD28
R11312 T14539 T14538 nummod 37.51,clone
R11313 T14540 T14538 punct ),clone
R11314 T14541 T14538 prep by,clone
R11315 T14542 T14541 pobj pretreatment,by
R11316 T14543 T14538 prep with,clone
R11317 T14544 T14545 nummod 300,μg
R11318 T14545 T14549 nmod μg,anti
R11319 T14546 T14549 nmod /,anti
R11320 T14547 T14549 compound ml,anti
R11321 T14548 T14549 compound goat,anti
R11322 T14549 T14543 pobj anti,with
R11323 T14550 T14551 compound hamster,IgG
R11324 T14551 T14549 appos IgG,anti
R11325 T14552 T14511 punct .,cultured
R11326 T14553 T14559 prep After,removed
R11327 T14554 T14555 nummod 48,h
R11328 T14555 T14553 pobj h,After
R11329 T14556 T14559 punct ",",removed
R11330 T14557 T14559 nsubjpass cells,removed
R11331 T14558 T14559 auxpass were,removed
R11332 T14559 T14559 ROOT removed,removed
R11333 T14560 T14559 prep from,removed
R11334 T14561 T14563 det the,stimulation
R11335 T14562 T14563 compound TCR,stimulation
R11336 T14563 T14560 pobj stimulation,from
R11337 T14564 T14559 cc and,removed
R11338 T14565 T14559 conj recultured,removed
R11339 T14566 T14565 prep at,recultured
R11340 T14567 T14568 det a,concentration
R11341 T14568 T14566 pobj concentration,at
R11342 T14569 T14568 prep of,concentration
R11343 T14570 T14573 nummod 5,cells/ml
R11344 T14571 T14573 nummod ×,cells/ml
R11345 T14572 T14573 nummod 105,cells/ml
R11346 T14573 T14569 pobj cells/ml,of
R11347 T14574 T14568 prep in,concentration
R11348 T14575 T14574 pobj media,in
R11349 T14576 T14565 conj supplemented,recultured
R11350 T14577 T14576 prep with,supplemented
R11351 T14578 T14580 nummod 100,rhIL-2
R11352 T14579 T14580 compound U/ml,rhIL-2
R11353 T14580 T14577 pobj rhIL-2,with
R11354 T14581 T14559 punct .,removed
R11355 T14582 T14584 det Every,h
R11356 T14583 T14584 nummod 24,h
R11357 T14584 T14589 npadvmod h,counted
R11358 T14585 T14589 punct ",",counted
R11359 T14586 T14587 amod viable,cells
R11360 T14587 T14589 nsubjpass cells,counted
R11361 T14588 T14589 auxpass were,counted
R11362 T14589 T14589 ROOT counted,counted
R11363 T14590 T14589 cc and,counted
R11364 T14591 T14589 conj readjusted,counted
R11365 T14592 T14591 prep to,readjusted
R11366 T14593 T14596 nummod 5,cells/ml
R11367 T14594 T14596 nummod ×,cells/ml
R11368 T14595 T14596 nummod 105,cells/ml
R11369 T14596 T14592 pobj cells/ml,to
R11370 T14597 T14591 prep with,readjusted
R11371 T14598 T14599 amod fresh,media
R11372 T14599 T14597 pobj media,with
R11373 T14600 T14597 pcomp containing,with
R11374 T14601 T14603 det the,amount
R11375 T14602 T14603 amod corresponding,amount
R11376 T14603 T14600 dobj amount,containing
R11377 T14604 T14603 prep of,amount
R11378 T14605 T14604 pobj rhIL-2,of
R11379 T14606 T14589 punct .,counted

UBERON-AE

Id Subject Object Predicate Lexical cue
T14353 246-252 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen
T14354 257-262 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
T14355 257-267 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node

GO-BP

Id Subject Object Predicate Lexical cue
T14374 90-93 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR
T14375 853-856 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR

GO-CC

Id Subject Object Predicate Lexical cue
T14827 40-45 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14828 54-59 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14829 268-273 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14830 282-287 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14831 623-628 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14832 650-655 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14833 825-830 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14834 914-919 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14835 986-991 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14836 1031-1036 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14837 90-93 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR
T14838 853-856 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR

sentences

Id Subject Object Predicate Lexical cue
T14376 0-46 Sentence denotes Isolation and culture of primary CD8+ T cells.
T14377 47-274 Sentence denotes CD8+ T cells from 4–8-wk-old Tcra−/− × P14 TCR transgenic (Taconic), C57BL/6J WT, or Tbx21−/− (The Jackson Laboratory) mice were purified (>95% purity) by negative selection (Invitrogen) from pooled spleen and lymph node cells.
T14378 275-383 Sentence denotes CD8+ T cells from Runx3−/− mice on the ICR background were purified by positive selection (Miltenyi Biotec).
T14379 384-812 Sentence denotes All mice were maintained in specific pathogen-free barrier facilities and used according to protocols approved by the Immune Disease Institute and the Harvard Medical School Animal Care and Use Committees. For stimulation, purified CD8+ T cells were cultured at 106 cells/ml (10 ml) in T25 flasks coated with 1 μg/ml each of anti-CD3 (clone 2C11) and anti-CD28 (clone 37.51) by pretreatment with 300 μg/ml goat anti–hamster IgG.
T14380 813-966 Sentence denotes After 48 h, cells were removed from the TCR stimulation and recultured at a concentration of 5 × 105 cells/ml in media supplemented with 100 U/ml rhIL-2.
T14381 967-1103 Sentence denotes Every 24 h, viable cells were counted and readjusted to 5 × 105 cells/ml with fresh media containing the corresponding amount of rhIL-2.
T157 0-46 Sentence denotes Isolation and culture of primary CD8+ T cells.
T158 47-274 Sentence denotes CD8+ T cells from 4–8-wk-old Tcra−/− × P14 TCR transgenic (Taconic), C57BL/6J WT, or Tbx21−/− (The Jackson Laboratory) mice were purified (>95% purity) by negative selection (Invitrogen) from pooled spleen and lymph node cells.
T159 275-383 Sentence denotes CD8+ T cells from Runx3−/− mice on the ICR background were purified by positive selection (Miltenyi Biotec).
T160 384-589 Sentence denotes All mice were maintained in specific pathogen-free barrier facilities and used according to protocols approved by the Immune Disease Institute and the Harvard Medical School Animal Care and Use Committees.
T161 590-812 Sentence denotes For stimulation, purified CD8+ T cells were cultured at 106 cells/ml (10 ml) in T25 flasks coated with 1 μg/ml each of anti-CD3 (clone 2C11) and anti-CD28 (clone 37.51) by pretreatment with 300 μg/ml goat anti–hamster IgG.
T162 813-966 Sentence denotes After 48 h, cells were removed from the TCR stimulation and recultured at a concentration of 5 × 105 cells/ml in media supplemented with 100 U/ml rhIL-2.
T163 967-1103 Sentence denotes Every 24 h, viable cells were counted and readjusted to 5 × 105 cells/ml with fresh media containing the corresponding amount of rhIL-2.

events-check-again

Id Subject Object Predicate Lexical cue
T14884 47-50 Protein denotes CD8
T14885 76-80 Protein denotes Tcra
T14886 132-137 Protein denotes Tbx21
T14887 275-278 Protein denotes CD8
T14888 293-298 Protein denotes Runx3
T14889 616-619 Protein denotes CD8
T14890 714-717 Protein denotes CD3
T14891 740-744 Protein denotes CD28
T14892 1096-1102 Protein denotes rhIL-2

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T14893 33-37 Protein denotes CD8+
T14894 47-50 Protein denotes CD8
T14895 86-93 Protein denotes P14 TCR
T14896 132-137 Protein denotes Tbx21
T14897 275-279 Protein denotes CD8+
T14898 293-298 Protein denotes Runx3
T14899 502-516 Protein denotes Immune Disease
T14900 616-620 Protein denotes CD8+
T14901 709-717 Protein denotes anti-CD3
T14902 719-729 Protein denotes clone 2C11
T14903 740-744 Protein denotes CD28
T14904 795-811 Protein denotes anti–hamster IgG
T14905 853-856 Protein denotes TCR
T14906 1096-1102 Protein denotes rhIL-2

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T14365 47-50 Protein denotes CD8
T14366 76-80 Protein denotes Tcra
T14367 132-137 Protein denotes Tbx21
T14368 275-278 Protein denotes CD8
T14369 293-298 Protein denotes Runx3
T14370 616-619 Protein denotes CD8
T14371 714-717 Protein denotes CD3
T14372 740-744 Protein denotes CD28
T14373 1096-1102 Protein denotes rhIL-2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14806 33-36 P01732 denotes CD8
T14807 33-36 P10966 denotes CD8
T14808 47-50 P10966 denotes CD8
T14809 47-50 P01732 denotes CD8
T14810 132-137 Q9UL17 denotes Tbx21
T14811 275-278 P01732 denotes CD8
T14812 275-278 P10966 denotes CD8
T14813 293-298 Q13761 denotes Runx3
T14814 616-619 P10966 denotes CD8
T14815 616-619 P01732 denotes CD8
T14816 714-717 P04234 denotes CD3
T14817 714-717 P20963 denotes CD3
T14818 714-717 P09693 denotes CD3
T14819 714-717 P07766 denotes CD3
T14820 740-744 P10747 denotes CD28

test2

Id Subject Object Predicate Lexical cue
T14356 47-50 Protein denotes CD8
T14357 76-80 Protein denotes Tcra
T14358 132-137 Protein denotes Tbx21
T14359 275-278 Protein denotes CD8
T14360 293-298 Protein denotes Runx3
T14361 616-619 Protein denotes CD8
T14362 714-717 Protein denotes CD3
T14363 740-744 Protein denotes CD28
T14364 1096-1102 Protein denotes rhIL-2