PMC:2626671 / 18589-18730
Annnotations
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T9643","span":{"begin":0,"end":14},"obj":"NN"},{"id":"T9644","span":{"begin":15,"end":17},"obj":"IN"},{"id":"T9645","span":{"begin":18,"end":26},"obj":"NN"},{"id":"T9646","span":{"begin":27,"end":31},"obj":"JJ"},{"id":"T9647","span":{"begin":32,"end":33},"obj":"NN"},{"id":"T9648","span":{"begin":34,"end":39},"obj":"NN"},{"id":"T9649","span":{"begin":40,"end":44},"obj":"IN"},{"id":"T9650","span":{"begin":45,"end":50},"obj":"NN"},{"id":"T9651","span":{"begin":51,"end":59},"obj":"VB"},{"id":"T9652","span":{"begin":60,"end":70},"obj":"NN"},{"id":"T9653","span":{"begin":71,"end":73},"obj":"IN"},{"id":"T9654","span":{"begin":74,"end":79},"obj":"NN"},{"id":"T9655","span":{"begin":80,"end":82},"obj":"RB"},{"id":"T9656","span":{"begin":83,"end":87},"obj":"RB"},{"id":"T9657","span":{"begin":88,"end":90},"obj":"IN"},{"id":"T9658","span":{"begin":91,"end":99},"obj":"NN"},{"id":"T9659","span":{"begin":99,"end":100},"obj":"-COMMA-"},{"id":"T9660","span":{"begin":101,"end":109},"obj":"NN"},{"id":"T9661","span":{"begin":110,"end":111},"obj":"NN"},{"id":"T9662","span":{"begin":111,"end":112},"obj":"-COMMA-"},{"id":"T9663","span":{"begin":113,"end":116},"obj":"CC"},{"id":"T9664","span":{"begin":117,"end":122},"obj":"NN"},{"id":"T9665","span":{"begin":123,"end":124},"obj":"-LRB-"},{"id":"T9666","span":{"begin":124,"end":128},"obj":"NN"},{"id":"T9667","span":{"begin":129,"end":130},"obj":"CD"},{"id":"T9668","span":{"begin":130,"end":131},"obj":"-COMMA-"},{"id":"T9669","span":{"begin":132,"end":133},"obj":"NN"},{"id":"T9670","span":{"begin":134,"end":137},"obj":"CC"},{"id":"T9671","span":{"begin":138,"end":139},"obj":"NN"},{"id":"T9672","span":{"begin":139,"end":140},"obj":"-RRB-"}],"relations":[{"id":"R7832","pred":"arg1Of","subj":"T9643","obj":"T9644"},{"id":"R7835","pred":"arg1Of","subj":"T9643","obj":"T9649"},{"id":"R7836","pred":"arg1Of","subj":"T9643","obj":"T9651"},{"id":"R7840","pred":"arg2Of","subj":"T9648","obj":"T9644"},{"id":"R7851","pred":"arg1Of","subj":"T9648","obj":"T9645"},{"id":"R7852","pred":"arg1Of","subj":"T9648","obj":"T9646"},{"id":"R7854","pred":"arg1Of","subj":"T9648","obj":"T9647"},{"id":"R7856","pred":"arg2Of","subj":"T9650","obj":"T9649"},{"id":"R7862","pred":"arg2Of","subj":"T9652","obj":"T9651"},{"id":"R7863","pred":"arg1Of","subj":"T9652","obj":"T9653"},{"id":"R7868","pred":"arg1Of","subj":"T9652","obj":"T9665"},{"id":"R7872","pred":"arg1Of","subj":"T9654","obj":"T9657"},{"id":"R7875","pred":"arg2Of","subj":"T9657","obj":"T9653"},{"id":"R7885","pred":"arg1Of","subj":"T9657","obj":"T9655"},{"id":"R7886","pred":"arg1Of","subj":"T9657","obj":"T9656"},{"id":"R7887","pred":"arg1Of","subj":"T9658","obj":"T9659"},{"id":"R7896","pred":"arg1Of","subj":"T9659","obj":"T9663"},{"id":"R7899","pred":"arg2Of","subj":"T9661","obj":"T9659"},{"id":"R7906","pred":"arg1Of","subj":"T9661","obj":"T9660"},{"id":"R7908","pred":"arg2Of","subj":"T9663","obj":"T9657"},{"id":"R7909","pred":"arg1Of","subj":"T9663","obj":"T9662"},{"id":"R7910","pred":"arg2Of","subj":"T9664","obj":"T9663"},{"id":"R7922","pred":"arg2Of","subj":"T9666","obj":"T9665"},{"id":"R7925","pred":"arg1Of","subj":"T9666","obj":"T9667"},{"id":"R7928","pred":"arg1Of","subj":"T9666","obj":"T9668"},{"id":"R7929","pred":"arg1Of","subj":"T9669","obj":"T9670"},{"id":"R7932","pred":"arg2Of","subj":"T9670","obj":"T9668"},{"id":"R7939","pred":"arg2Of","subj":"T9671","obj":"T9670"},{"id":"R7941","pred":"arg3Of","subj":"T9672","obj":"T9665"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B)."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T8718","span":{"begin":0,"end":14},"obj":"NN"},{"id":"T8719","span":{"begin":15,"end":17},"obj":"IN"},{"id":"T8720","span":{"begin":18,"end":23},"obj":"NNP"},{"id":"T8721","span":{"begin":23,"end":24},"obj":"FW"},{"id":"T8722","span":{"begin":24,"end":25},"obj":"FW"},{"id":"T8723","span":{"begin":25,"end":26},"obj":"FW"},{"id":"T8724","span":{"begin":27,"end":30},"obj":"FW"},{"id":"T8725","span":{"begin":30,"end":31},"obj":"FW"},{"id":"T8726","span":{"begin":32,"end":33},"obj":"FW"},{"id":"T8727","span":{"begin":34,"end":39},"obj":"NNS"},{"id":"T8728","span":{"begin":40,"end":44},"obj":"IN"},{"id":"T8729","span":{"begin":45,"end":50},"obj":"JJ"},{"id":"T8730","span":{"begin":51,"end":59},"obj":"VBN"},{"id":"T8731","span":{"begin":60,"end":70},"obj":"NN"},{"id":"T8732","span":{"begin":71,"end":73},"obj":"IN"},{"id":"T8733","span":{"begin":74,"end":79},"obj":"NNP"},{"id":"T8734","span":{"begin":80,"end":82},"obj":"RB"},{"id":"T8735","span":{"begin":83,"end":87},"obj":"RB"},{"id":"T8736","span":{"begin":88,"end":90},"obj":"IN"},{"id":"T8737","span":{"begin":91,"end":99},"obj":"NN"},{"id":"T8738","span":{"begin":99,"end":100},"obj":","},{"id":"T8739","span":{"begin":101,"end":109},"obj":"NN"},{"id":"T8740","span":{"begin":110,"end":111},"obj":"NNP"},{"id":"T8741","span":{"begin":111,"end":112},"obj":","},{"id":"T8742","span":{"begin":113,"end":116},"obj":"CC"},{"id":"T8743","span":{"begin":117,"end":122},"obj":"NNP"},{"id":"T8744","span":{"begin":123,"end":124},"obj":"-LRB-"},{"id":"T8745","span":{"begin":124,"end":128},"obj":"NNP"},{"id":"T8746","span":{"begin":129,"end":130},"obj":"CD"},{"id":"T8747","span":{"begin":130,"end":131},"obj":","},{"id":"T8748","span":{"begin":132,"end":133},"obj":"DT"},{"id":"T8749","span":{"begin":134,"end":137},"obj":"CC"},{"id":"T8750","span":{"begin":138,"end":139},"obj":"NNP"},{"id":"T8751","span":{"begin":139,"end":140},"obj":"-RRB-"},{"id":"T8752","span":{"begin":140,"end":141},"obj":"."}],"relations":[{"id":"R6895","pred":"ROOT","subj":"T8718","obj":"T8718"},{"id":"R6896","pred":"prep","subj":"T8719","obj":"T8718"},{"id":"R6897","pred":"nmod","subj":"T8720","obj":"T8727"},{"id":"R6898","pred":"nmod","subj":"T8721","obj":"T8727"},{"id":"R6899","pred":"nmod","subj":"T8722","obj":"T8727"},{"id":"R6900","pred":"nmod","subj":"T8723","obj":"T8727"},{"id":"R6901","pred":"nmod","subj":"T8724","obj":"T8727"},{"id":"R6902","pred":"nmod","subj":"T8725","obj":"T8727"},{"id":"R6903","pred":"compound","subj":"T8726","obj":"T8727"},{"id":"R6904","pred":"pobj","subj":"T8727","obj":"T8719"},{"id":"R6905","pred":"prep","subj":"T8728","obj":"T8727"},{"id":"R6906","pred":"amod","subj":"T8729","obj":"T8731"},{"id":"R6907","pred":"amod","subj":"T8730","obj":"T8731"},{"id":"R6908","pred":"pobj","subj":"T8731","obj":"T8728"},{"id":"R6909","pred":"prep","subj":"T8732","obj":"T8731"},{"id":"R6910","pred":"pobj","subj":"T8733","obj":"T8732"},{"id":"R6911","pred":"advmod","subj":"T8734","obj":"T8736"},{"id":"R6912","pred":"advmod","subj":"T8735","obj":"T8736"},{"id":"R6913","pred":"cc","subj":"T8736","obj":"T8731"},{"id":"R6914","pred":"conj","subj":"T8737","obj":"T8731"},{"id":"R6915","pred":"punct","subj":"T8738","obj":"T8718"},{"id":"R6916","pred":"compound","subj":"T8739","obj":"T8740"},{"id":"R6917","pred":"appos","subj":"T8740","obj":"T8718"},{"id":"R6918","pred":"punct","subj":"T8741","obj":"T8718"},{"id":"R6919","pred":"cc","subj":"T8742","obj":"T8718"},{"id":"R6920","pred":"conj","subj":"T8743","obj":"T8718"},{"id":"R6921","pred":"punct","subj":"T8744","obj":"T8745"},{"id":"R6922","pred":"appos","subj":"T8745","obj":"T8743"},{"id":"R6923","pred":"nummod","subj":"T8746","obj":"T8745"},{"id":"R6924","pred":"punct","subj":"T8747","obj":"T8745"},{"id":"R6925","pred":"det","subj":"T8748","obj":"T8743"},{"id":"R6926","pred":"cc","subj":"T8749","obj":"T8748"},{"id":"R6927","pred":"conj","subj":"T8750","obj":"T8748"},{"id":"R6928","pred":"punct","subj":"T8751","obj":"T8750"},{"id":"R6929","pred":"punct","subj":"T8752","obj":"T8718"}],"text":"Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B)."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T10052","span":{"begin":34,"end":39},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B)."}
sentences
{"project":"sentences","denotations":[{"id":"T7978","span":{"begin":0,"end":141},"obj":"Sentence"},{"id":"T107","span":{"begin":0,"end":141},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B)."}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T11176","span":{"begin":18,"end":23},"obj":"Protein"},{"id":"T11177","span":{"begin":27,"end":30},"obj":"Protein"},{"id":"T11178","span":{"begin":45,"end":50},"obj":"Protein"},{"id":"T11179","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T11180","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T11181","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T11182","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T11183","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T11184","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T11185","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T11186","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T11187","span":{"begin":74,"end":79},"obj":"Protein"},{"id":"T11188","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T11189","span":{"begin":101,"end":111},"obj":"Protein"},{"id":"T11190","span":{"begin":117,"end":122},"obj":"Protein"}],"relations":[{"id":"R8777","pred":"causeOf","subj":"T11178","obj":"T11182"},{"id":"R8787","pred":"causeOf","subj":"T11178","obj":"T11181"},{"id":"R8788","pred":"causeOf","subj":"T11178","obj":"T11180"},{"id":"R8789","pred":"causeOf","subj":"T11178","obj":"T11179"},{"id":"R8790","pred":"themeOf","subj":"T11183","obj":"T11181"},{"id":"R8791","pred":"themeOf","subj":"T11184","obj":"T11182"},{"id":"R8792","pred":"themeOf","subj":"T11185","obj":"T11180"},{"id":"R8793","pred":"themeOf","subj":"T11186","obj":"T11179"},{"id":"R8794","pred":"themeOf","subj":"T11187","obj":"T11184"},{"id":"R8795","pred":"themeOf","subj":"T11188","obj":"T11183"},{"id":"R8796","pred":"themeOf","subj":"T11189","obj":"T11185"},{"id":"R8798","pred":"themeOf","subj":"T11190","obj":"T11186"}],"text":"Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B)."}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T11364","span":{"begin":18,"end":23},"obj":"Protein"},{"id":"T11365","span":{"begin":27,"end":30},"obj":"Protein"},{"id":"T11366","span":{"begin":45,"end":50},"obj":"Protein"},{"id":"T11367","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T11368","span":{"begin":101,"end":111},"obj":"Protein"},{"id":"T11369","span":{"begin":117,"end":122},"obj":"Protein"},{"id":"T11370","span":{"begin":124,"end":127},"obj":"Protein"},{"id":"T11371","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T11372","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T11373","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T11374","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T11375","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T11376","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T11377","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T11378","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T11379","span":{"begin":51,"end":59},"obj":"Positive_regulation"}],"relations":[{"id":"R8904","pred":"themeOf","subj":"T11367","obj":"T11371"},{"id":"R8909","pred":"themeOf","subj":"T11367","obj":"T11372"},{"id":"R8910","pred":"themeOf","subj":"T11368","obj":"T11373"},{"id":"R8911","pred":"themeOf","subj":"T11369","obj":"T11374"},{"id":"R8912","pred":"themeOf","subj":"T11370","obj":"T11375"},{"id":"R8913","pred":"themeOf","subj":"T11372","obj":"T11376"},{"id":"R8914","pred":"themeOf","subj":"T11373","obj":"T11377"},{"id":"R8915","pred":"themeOf","subj":"T11374","obj":"T11378"},{"id":"R8916","pred":"themeOf","subj":"T11375","obj":"T11379"}],"text":"Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B)."}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T7899","span":{"begin":18,"end":23},"obj":"Protein"},{"id":"T7900","span":{"begin":27,"end":30},"obj":"Protein"},{"id":"T7901","span":{"begin":45,"end":50},"obj":"Protein"},{"id":"T7902","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T7903","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T7904","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T7905","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T7906","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T7907","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T7908","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T7909","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T7910","span":{"begin":74,"end":79},"obj":"Protein"},{"id":"T7911","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T7912","span":{"begin":101,"end":111},"obj":"Protein"},{"id":"T7913","span":{"begin":117,"end":122},"obj":"Protein"}],"relations":[{"id":"R6130","pred":"causeOf","subj":"T7901","obj":"T7905"},{"id":"R6131","pred":"causeOf","subj":"T7901","obj":"T7904"},{"id":"R6132","pred":"causeOf","subj":"T7901","obj":"T7903"},{"id":"R6133","pred":"causeOf","subj":"T7901","obj":"T7902"},{"id":"R6134","pred":"themeOf","subj":"T7906","obj":"T7904"},{"id":"R6135","pred":"themeOf","subj":"T7907","obj":"T7905"},{"id":"R6136","pred":"themeOf","subj":"T7908","obj":"T7903"},{"id":"R6137","pred":"themeOf","subj":"T7909","obj":"T7902"},{"id":"R6138","pred":"themeOf","subj":"T7910","obj":"T7907"},{"id":"R6139","pred":"themeOf","subj":"T7911","obj":"T7906"},{"id":"R6140","pred":"themeOf","subj":"T7912","obj":"T7908"},{"id":"R6141","pred":"themeOf","subj":"T7913","obj":"T7909"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B)."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T9970","span":{"begin":18,"end":23},"obj":"Q13761"},{"id":"T9971","span":{"begin":27,"end":30},"obj":"P10966"},{"id":"T9972","span":{"begin":27,"end":30},"obj":"P01732"},{"id":"T9973","span":{"begin":45,"end":50},"obj":"Q13761"},{"id":"T9974","span":{"begin":74,"end":79},"obj":"O95936"},{"id":"T9975","span":{"begin":91,"end":99},"obj":"P14222"},{"id":"T9976","span":{"begin":101,"end":111},"obj":"P10144"},{"id":"T9977","span":{"begin":117,"end":122},"obj":"P01579"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B)."}
test2
{"project":"test2","denotations":[{"id":"T7702","span":{"begin":18,"end":23},"obj":"Protein"},{"id":"T7703","span":{"begin":27,"end":30},"obj":"Protein"},{"id":"T7704","span":{"begin":45,"end":50},"obj":"Protein"},{"id":"T7705","span":{"begin":60,"end":70},"obj":"Gene_expression"},{"id":"T7706","span":{"begin":74,"end":79},"obj":"Protein"},{"id":"T7707","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T7708","span":{"begin":101,"end":111},"obj":"Protein"},{"id":"T7709","span":{"begin":117,"end":122},"obj":"Protein"}],"relations":[{"id":"R5998","pred":"themeOf","subj":"T7706","obj":"T7705"},{"id":"R5999","pred":"themeOf","subj":"T7707","obj":"T7705"},{"id":"R6000","pred":"themeOf","subj":"T7708","obj":"T7705"},{"id":"R6001","pred":"themeOf","subj":"T7709","obj":"T7705"}],"text":"Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B)."}