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PMC:2626671 / 18589-18730 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9643 0-14 NN denotes Reconstitution
T9644 15-17 IN denotes of
T9645 18-26 NN denotes Runx3−/−
T9646 27-31 JJ denotes CD8+
T9647 32-33 NN denotes T
T9648 34-39 NN denotes cells
T9649 40-44 IN denotes with
T9650 45-50 NN denotes Runx3
T9651 51-59 VB denotes restored
T9652 60-70 NN denotes expression
T9653 71-73 IN denotes of
T9654 74-79 NN denotes Eomes
T9655 80-82 RB denotes as
T9656 83-87 RB denotes well
T9657 88-90 IN denotes as
T9658 91-99 NN denotes perforin
T9659 99-100 -COMMA- denotes ,
T9660 101-109 NN denotes granzyme
T9661 110-111 NN denotes B
T9662 111-112 -COMMA- denotes ,
T9663 113-116 CC denotes and
T9664 117-122 NN denotes IFN-γ
T9665 123-124 -LRB- denotes (
T9666 124-128 NN denotes Fig.
T9667 129-130 CD denotes 4
T9668 130-131 -COMMA- denotes ,
T9669 132-133 NN denotes A
T9670 134-137 CC denotes and
T9671 138-139 NN denotes B
T9672 139-140 -RRB- denotes )
R7832 T9643 T9644 arg1Of Reconstitution,of
R7835 T9643 T9649 arg1Of Reconstitution,with
R7836 T9643 T9651 arg1Of Reconstitution,restored
R7840 T9648 T9644 arg2Of cells,of
R7851 T9648 T9645 arg1Of cells,Runx3−/−
R7852 T9648 T9646 arg1Of cells,CD8+
R7854 T9648 T9647 arg1Of cells,T
R7856 T9650 T9649 arg2Of Runx3,with
R7862 T9652 T9651 arg2Of expression,restored
R7863 T9652 T9653 arg1Of expression,of
R7868 T9652 T9665 arg1Of expression,(
R7872 T9654 T9657 arg1Of Eomes,as
R7875 T9657 T9653 arg2Of as,of
R7885 T9657 T9655 arg1Of as,as
R7886 T9657 T9656 arg1Of as,well
R7887 T9658 T9659 arg1Of perforin,","
R7896 T9659 T9663 arg1Of ",",and
R7899 T9661 T9659 arg2Of B,","
R7906 T9661 T9660 arg1Of B,granzyme
R7908 T9663 T9657 arg2Of and,as
R7909 T9663 T9662 arg1Of and,","
R7910 T9664 T9663 arg2Of IFN-γ,and
R7922 T9666 T9665 arg2Of Fig.,(
R7925 T9666 T9667 arg1Of Fig.,4
R7928 T9666 T9668 arg1Of Fig.,","
R7929 T9669 T9670 arg1Of A,and
R7932 T9670 T9668 arg2Of and,","
R7939 T9671 T9670 arg2Of B,and
R7941 T9672 T9665 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8718 0-14 NN denotes Reconstitution
T8719 15-17 IN denotes of
T8720 18-23 NNP denotes Runx3
T8721 23-24 FW denotes −
T8722 24-25 FW denotes /
T8723 25-26 FW denotes −
T8724 27-30 FW denotes CD8
T8725 30-31 FW denotes +
T8726 32-33 FW denotes T
T8727 34-39 NNS denotes cells
T8728 40-44 IN denotes with
T8729 45-50 JJ denotes Runx3
T8730 51-59 VBN denotes restored
T8731 60-70 NN denotes expression
T8732 71-73 IN denotes of
T8733 74-79 NNP denotes Eomes
T8734 80-82 RB denotes as
T8735 83-87 RB denotes well
T8736 88-90 IN denotes as
T8737 91-99 NN denotes perforin
T8738 99-100 , denotes ,
T8739 101-109 NN denotes granzyme
T8740 110-111 NNP denotes B
T8741 111-112 , denotes ,
T8742 113-116 CC denotes and
T8743 117-122 NNP denotes IFN-γ
T8744 123-124 -LRB- denotes (
T8745 124-128 NNP denotes Fig.
T8746 129-130 CD denotes 4
T8747 130-131 , denotes ,
T8748 132-133 DT denotes A
T8749 134-137 CC denotes and
T8750 138-139 NNP denotes B
T8751 139-140 -RRB- denotes )
T8752 140-141 . denotes .
R6895 T8718 T8718 ROOT Reconstitution,Reconstitution
R6896 T8719 T8718 prep of,Reconstitution
R6897 T8720 T8727 nmod Runx3,cells
R6898 T8721 T8727 nmod −,cells
R6899 T8722 T8727 nmod /,cells
R6900 T8723 T8727 nmod −,cells
R6901 T8724 T8727 nmod CD8,cells
R6902 T8725 T8727 nmod +,cells
R6903 T8726 T8727 compound T,cells
R6904 T8727 T8719 pobj cells,of
R6905 T8728 T8727 prep with,cells
R6906 T8729 T8731 amod Runx3,expression
R6907 T8730 T8731 amod restored,expression
R6908 T8731 T8728 pobj expression,with
R6909 T8732 T8731 prep of,expression
R6910 T8733 T8732 pobj Eomes,of
R6911 T8734 T8736 advmod as,as
R6912 T8735 T8736 advmod well,as
R6913 T8736 T8731 cc as,expression
R6914 T8737 T8731 conj perforin,expression
R6915 T8738 T8718 punct ",",Reconstitution
R6916 T8739 T8740 compound granzyme,B
R6917 T8740 T8718 appos B,Reconstitution
R6918 T8741 T8718 punct ",",Reconstitution
R6919 T8742 T8718 cc and,Reconstitution
R6920 T8743 T8718 conj IFN-γ,Reconstitution
R6921 T8744 T8745 punct (,Fig.
R6922 T8745 T8743 appos Fig.,IFN-γ
R6923 T8746 T8745 nummod 4,Fig.
R6924 T8747 T8745 punct ",",Fig.
R6925 T8748 T8743 det A,IFN-γ
R6926 T8749 T8748 cc and,A
R6927 T8750 T8748 conj B,A
R6928 T8751 T8750 punct ),B
R6929 T8752 T8718 punct .,Reconstitution

GO-CC

Id Subject Object Predicate Lexical cue
T10052 34-39 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7978 0-141 Sentence denotes Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B).
T107 0-141 Sentence denotes Reconstitution of Runx3−/− CD8+ T cells with Runx3 restored expression of Eomes as well as perforin, granzyme B, and IFN-γ (Fig. 4, A and B).

events-check-again

Id Subject Object Predicate Lexical cue
T11176 18-23 Protein denotes Runx3
T11177 27-30 Protein denotes CD8
T11178 45-50 Protein denotes Runx3
T11179 51-59 Positive_regulation denotes restored
T11180 51-59 Positive_regulation denotes restored
T11181 51-59 Positive_regulation denotes restored
T11182 51-59 Positive_regulation denotes restored
T11183 60-70 Gene_expression denotes expression
T11184 60-70 Gene_expression denotes expression
T11185 60-70 Gene_expression denotes expression
T11186 60-70 Gene_expression denotes expression
T11187 74-79 Protein denotes Eomes
T11188 91-99 Protein denotes perforin
T11189 101-111 Protein denotes granzyme B
T11190 117-122 Protein denotes IFN-γ
R8777 T11178 T11182 causeOf Runx3,restored
R8787 T11178 T11181 causeOf Runx3,restored
R8788 T11178 T11180 causeOf Runx3,restored
R8789 T11178 T11179 causeOf Runx3,restored
R8790 T11183 T11181 themeOf expression,restored
R8791 T11184 T11182 themeOf expression,restored
R8792 T11185 T11180 themeOf expression,restored
R8793 T11186 T11179 themeOf expression,restored
R8794 T11187 T11184 themeOf Eomes,expression
R8795 T11188 T11183 themeOf perforin,expression
R8796 T11189 T11185 themeOf granzyme B,expression
R8798 T11190 T11186 themeOf IFN-γ,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11364 18-23 Protein denotes Runx3
T11365 27-30 Protein denotes CD8
T11366 45-50 Protein denotes Runx3
T11367 91-99 Protein denotes perforin
T11368 101-111 Protein denotes granzyme B
T11369 117-122 Protein denotes IFN-γ
T11370 124-127 Protein denotes Fig
T11371 51-59 Positive_regulation denotes restored
T11372 60-70 Gene_expression denotes expression
T11373 60-70 Gene_expression denotes expression
T11374 60-70 Gene_expression denotes expression
T11375 60-70 Gene_expression denotes expression
T11376 51-59 Positive_regulation denotes restored
T11377 51-59 Positive_regulation denotes restored
T11378 51-59 Positive_regulation denotes restored
T11379 51-59 Positive_regulation denotes restored
R8904 T11367 T11371 themeOf perforin,restored
R8909 T11367 T11372 themeOf perforin,expression
R8910 T11368 T11373 themeOf granzyme B,expression
R8911 T11369 T11374 themeOf IFN-γ,expression
R8912 T11370 T11375 themeOf Fig,expression
R8913 T11372 T11376 themeOf expression,restored
R8914 T11373 T11377 themeOf expression,restored
R8915 T11374 T11378 themeOf expression,restored
R8916 T11375 T11379 themeOf expression,restored

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T7899 18-23 Protein denotes Runx3
T7900 27-30 Protein denotes CD8
T7901 45-50 Protein denotes Runx3
T7902 51-59 Positive_regulation denotes restored
T7903 51-59 Positive_regulation denotes restored
T7904 51-59 Positive_regulation denotes restored
T7905 51-59 Positive_regulation denotes restored
T7906 60-70 Gene_expression denotes expression
T7907 60-70 Gene_expression denotes expression
T7908 60-70 Gene_expression denotes expression
T7909 60-70 Gene_expression denotes expression
T7910 74-79 Protein denotes Eomes
T7911 91-99 Protein denotes perforin
T7912 101-111 Protein denotes granzyme B
T7913 117-122 Protein denotes IFN-γ
R6130 T7901 T7905 causeOf Runx3,restored
R6131 T7901 T7904 causeOf Runx3,restored
R6132 T7901 T7903 causeOf Runx3,restored
R6133 T7901 T7902 causeOf Runx3,restored
R6134 T7906 T7904 themeOf expression,restored
R6135 T7907 T7905 themeOf expression,restored
R6136 T7908 T7903 themeOf expression,restored
R6137 T7909 T7902 themeOf expression,restored
R6138 T7910 T7907 themeOf Eomes,expression
R6139 T7911 T7906 themeOf perforin,expression
R6140 T7912 T7908 themeOf granzyme B,expression
R6141 T7913 T7909 themeOf IFN-γ,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9970 18-23 Q13761 denotes Runx3
T9971 27-30 P10966 denotes CD8
T9972 27-30 P01732 denotes CD8
T9973 45-50 Q13761 denotes Runx3
T9974 74-79 O95936 denotes Eomes
T9975 91-99 P14222 denotes perforin
T9976 101-111 P10144 denotes granzyme B
T9977 117-122 P01579 denotes IFN-γ

test2

Id Subject Object Predicate Lexical cue
T7702 18-23 Protein denotes Runx3
T7703 27-30 Protein denotes CD8
T7704 45-50 Protein denotes Runx3
T7705 60-70 Gene_expression denotes expression
T7706 74-79 Protein denotes Eomes
T7707 91-99 Protein denotes perforin
T7708 101-111 Protein denotes granzyme B
T7709 117-122 Protein denotes IFN-γ
R5998 T7706 T7705 themeOf Eomes,expression
R5999 T7707 T7705 themeOf perforin,expression
R6000 T7708 T7705 themeOf granzyme B,expression
R6001 T7709 T7705 themeOf IFN-γ,expression